Non-Coding RNA Search

Ss1.1-Pig4-TMW8062H13.3

Sequence:


               
               ATCTACCCCACCCTGTGGTGGCTGTTCCGAGATGGCCTTTTGCCCGAAGACACATACATC
GTGGGCTACGCCCGCTCGCGCCTCTCCGTGGCTGACATCCGCAGGCAGAGCGAGCCGTTC
TTCAAAGCCACCCCCGAGGAGAAGCCCAGGCTGGAGGAGTTCTTTGCCCGCAACTCCTAC
GTGGCTGGCCAGGAGGACGATGCGGCCTCCTACGCACGCCTCAACAGCCACATGAACGCC
CTCCACCAGGGGCCCCAGGCCAACCGCCTCTTCTACCTGGCCTTGCCCCCCACCGTCTAC
GAGGCCGTCACCAAGAACATCCGCGAGACCTGCATGAGCCGCGCAGGCTGGAACCGCGTC
ATCGTGGAGAAGCCCTTCGGGAGGGACCTGCAGAGCTCCGACCAGCTGTCCAACCACATC
TCCTCCCTGTTCCGCGAGGACCAGATCTACCGCATCGACCACTACCTGGGCAAGGAGATG
GTCCAGAACCTCATGGTGCTGAGGTTTGCCAACAGGATCTTCGGGCCCATCTGGAACCGC
GACAACATCGCCTGCGTCATCCTCACCTTCAAGGAGCCCTTTGGCACCGAGGGCCGTGGG
GGCTACTTCGATGAATTCGGGATCATCCGGGACGTGATGCAGAATCACCTCCTGCAGATG
CTGTGTCTGGTGGCCATGGAGAAGCCCGCCTCCACCGACTCGGACGACGTCCGTGATGAG
AAGGTCAAGGTGTTGAAGTGCATCTCAGAGGTGCAGGCGAGCAACGTGGTCCTGGGCCAG
TACGTGGGGAACCCCAACGGAGAGGGCGAGGCCACCAGAGGGTACCTGGACGACCCCACG
GTGCCCTGCGGGTCCACCACCGCCACCTTCGCGGCGGTTGTCCTCTACGTGGAGAACGAG
CGATGGGACGGGGTGCCCTTCATCCTGCGCTGCGGCAAAGCCCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTACCCCACCCTGTGGTGGCTGTTCCGAGATGGCCTTTTGCCCGAAGACACATACATC
GTGGGCTACGCCCGCTCGCGCCTCTCCGTGGCTGACATCCGCAGGCAGAGCGAGCCGTTC
TTCAAAGCCACCCCCGAGGAGAAGCCCAGGCTGGAGGAGTTCTTTGCCCGCAACTCCTAC
GTGGCTGGCCAGGAGGACGATGCGGCCTCCTACGCACGCCTCAACAGCCACATGAACGCC
CTCCACCAGGGGCCCCAGGCCAACCGCCTCTTCTACCTGGCCTTGCCCCCCACCGTCTAC
GAGGCCGTCACCAAGAACATCCGCGAGACCTGCATGAGCCGCGCAGGCTGGAACCGCGTC
ATCGTGGAGAAGCCCTTCGGGAGGGACCTGCAGAGCTCCGACCAGCTGTCCAACCACATC
TCCTCCCTGTTCCGCGAGGACCAGATCTACCGCATCGACCACTACCTGGGCAAGGAGATG
GTCCAGAACCTCATGGTGCTGAGGTTTGCCAACAGGATCTTCGGGCCCATCTGGAACCGC
GACAACATCGCCTGCGTCATCCTCACCTTCAAGGAGCCCTTTGGCACCGAGGGCCGTGGG
GGCTACTTCGATGAATTCGGGATCATCCGGGACGTGATGCAGAATCACCTCCTGCAGATG
CTGTGTCTGGTGGCCATGGAGAAGCCCGCCTCCACCGACTCGGACGACGTCCGTGATGAG
AAGGTCAAGGTGTTGAAGTGCATCTCAGAGGTGCAGGCGAGCAACGTGGTCCTGGGCCAG
TACGTGGGGAACCCCAACGGAGAGGGCGAGGCCACCAGAGGGTACCTGGACGACCCCACG
GTGCCCTGCGGGTCCACCACCGCCACCTTCGCGGCGGTTGTCCTCTACGTGGAGAACGAG
CGATGGGACGGGGTGCCCTTCATCCTGCGCTGCGGCAAAGCCCCAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62510568|sp|O55044|G6PD_CRIGR

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62510568|sp|O55044|G6PD_CRIGR

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               559-672, - strand, RNAz p=0.655806
               

               
               769-943, + strand, RNAz p=0.615035

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               559-672, - strand, RNAz p=0.655806
               

               
               769-943, + strand, RNAz p=0.615035

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-943, gnl|bosTau2|chr5 (45914531-45913611)
               

               
               1-943, gnl|Hg17|chrX (153327975-153324689)
               

               
               1-943, gnl|Mm7|chr5 (61172037-61172979)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-943, gnl|bosTau2|chr5 (45914531-45913611)
               

               
               1-943, gnl|Hg17|chrX (153327975-153324689)
               

               
               1-943, gnl|Mm7|chr5 (61172037-61172979)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               clu (0.119646)
               

               
               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               cty (0.10408)

	559-672, - strand, RNAz p=0.655806
	769-943, + strand, RNAz p=0.615035

	1-943, gnl\|bosTau2\|chr5 (45914531-45913611)
	1-943, gnl\|Hg17\|chrX (153327975-153324689)
	1-943, gnl\|Mm7\|chr5 (61172037-61172979)