Ss1.1-Pig4-TMW8062H17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCTTAGGAGACCCCTCAGCAGGGAGTTACCATCTCTCCGGGAGATTCTCGGTAGTCCACA TAGATAACCCGCGTCACCATGGGGGCTGTGCTGGGCGTCTTCTCCCTCGCCAGCTGGGTT CCATGCCTTTGTGGTGGTGCCTCCTGTTTGCTGTGTGGTTGCTGTCCCAACAGTAAGAAT TCCACTCTGACTCGCCTCATCTATGCTTTTATTCTCTTCCTGGGCACTATTGTATGTTGT ATCATGTTTCATGAAGGGGTGGAAACTCAGCTGAAAAAGATTCCTGGATTCTGTGATGAA GGACTTAAAACCAAAGTGGCTGATATAAACATGGATAAAGATTGTGATGTGCTGGTTCGT TACAAAGCTGTATATCGAATCAACTTTGCCTTGGCCATCTTTTTCTTTGCTTTCTCTCTG TTAATGTTGAAAGTGAAAACGAGTAAAGATCCCAGAGCAGCGATACACAATGGGTTTTGG TTCTTCAAAATTGCTGCCATTATTGGTATCATGGTTGGATCTTTCTATATCCCTGGGGGC CACTTCACCACAGCCTGGTTTATTATTGGCATGGTGGGGGCTGCCTTCTTCATCCTCATC CAGCTGGTGCTGTTGGTAGACTTTGCTCACTCTTGGAATGAATCATGGGTAAATAAAATG GAAGAAGGAAACCCAAGGTGCTGGTATGCTGCTTTACTGTCTTTCACAAGCTTTTGTTAC ATCCTGTCAATCGTCTTTGTCGCATTGCTCTACTCATACTACACCAAACCCGATGGCTGC ACAGAAAACAAGTTCTTCATCAGTTTTAATCTGATCCTTTGCGTTGTGGTTTCTATTATA TCAATCCATCCAAAAATTCAGGAACACCAGCCTCGTTCTGGCCTCCTGCAGTCCTCTGTC ATAACCCTCTACACCATATACCTCACATGGTCAGCCATGTCCAATGAACCTGATCAGTCC TGCAACCCTGGCCTGTTGAGCATCATTACACGCATGACCTCACCAACATTGGCTCCTCCT GGAAATGCAACTGCTGCGGTCCCTACCCCTGCTCCACCATCGCAGAGTGGGCCTTTTCTG AGTCGAGAGAATTTTATTGGGCTGATTGTCTTTGTTCTCTCCCTTTTGTATTCTAGCTTC CGCAATTCCACCAATAGCCAAGTAAATAAGCTGACCCTGTCGGGAAGTGACAGCGTGATC CTCCGAGATACAGCTGCCAATGGCGCCAGTGACGAGGAGGATGGGCGGCCCCGGAGGGCT GTGGACAACGAGCGAGAAGGGGTGCAGTACAGCTACTCCATGTTCCACTTCATGCTCTTC TCGGCCTCCCTCTACATCATGATGACCCTGACCAACTGGTACAGCCCTGACGCAAACTTC CAGAGCATGACCAGCAAGTGGCCGGCTGTGTGGGTCAAGATCAGCTCCAGCTGGGTCTGC CTCCTCCTCTACGTCTGGACCCTTGTGGCCCCACTCGTCCTCACCAATCGAGACTTCAGC TGAAGCATGAGTGCCAAGGACGCCTCTGGAATTCATAAAGGTCTCCTTTGCTGAAAGCTC ATACCCGTTTTACTTTCGCTTCAACTAAAATACTAAGCGAATGCTGTGCAAATAAGACTA TATCCAAGTTTATATCTGAGGGCCAGATTGAATAATGCTTGATGCGGGATCAGAACTTTT CATTTATATCTATATTATGTTTATTTGTAAGGCTATAGAGCAAAAGGAACATTTTGCGTT TTACAGTGAACTACAGCTGTGCTGTGAAGAGAGTTCTTTATTAAGACTTGGAGGTTCCTA CAACTTTGATTTAAAATGTGGGAGAGAAAAATGTTGCATATTTGAGGCCATCATTAATAT ATTTCTATTGTAGTATCCTTAAAAAGCAAAATAATTATAATGATGCTTTTCTATGACAGT TTTCCTCTGTGGAAGTCTTTACTTGTGTGATGCAGGCCTCTGTTCAGTCCTTAAACTCAC AGTGCTTGGTGGAAGGAGTAAGTATGTGAGTCTTGGCACAGAAGAGGGGTTGATGATATG GCTGCTGCTTCTCCATCTTGAGTTTTTTCATTTACTTTTTATATACTACAGCATTGATGC TGCTTGATTCAAGCCTGTGGCTTTGCCAGAAATGTTAATTTCAATAAGTGCTTTGTAGGT TTGGTTAAAGTGAAGATTCACTTGGGAAAACAGTGCGACTTTGGTCTCTGTAATTCTCTT GTTATCAGTATGTAAAAGTACAATGCATGTGAATTTATTATATTTGCACTATAAAAGTCT TTGATTAAAACAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCTTAGGAGACCCCTCAGCAGGGAGTTACCATCTCTCCGGGAGATTCTCGGTAGTCCACA TAGATAACCCGCGTCACCATGGGGGCTGTGCTGGGCGTCTTCTCCCTCGCCAGCTGGGTT CCATGCCTTTGTGGTGGTGCCTCCTGTTTGCTGTGTGGTTGCTGTCCCAACAGTAAGAAT TCCACTCTGACTCGCCTCATCTATGCTTTTATTCTCTTCCTGGGCACTATTGTATGTTGT ATCATGTTTCATGAAGGGGTGGAAACTCAGCTGAAAAAGATTCCTGGATTCTGTGATGAA GGACTTAAAACCAAAGTGGCTGATATAAACATGGATAAAGATTGTGATGTGCTGGTTCGT TACAAAGCTGTATATCGAATCAACTTTGCCTTGGCCATCTTTTTCTTTGCTTTCTCTCTG TTAATGTTGAAAGTGAAAACGAGTAAAGATCCCAGAGCAGCGATACACAATGGGTTTTGG TTCTTCAAAATTGCTGCCATTATTGGTATCATGGTTGGATCTTTCTATATCCCTGGGGGC CACTTCACCACAGCCTGGTTTATTATTGGCATGGTGGGGGCTGCCTTCTTCATCCTCATC CAGCTGGTGCTGTTGGTAGACTTTGCTCACTCTTGGAATGAATCATGGGTAAATAAAATG GAAGAAGGAAACCCAAGGTGCTGGTATGCTGCTTTACTGTCTTTCACAAGCTTTTGTTAC ATCCTGTCAATCGTCTTTGTCGCATTGCTCTACTCATACTACACCAAACCCGATGGCTGC ACAGAAAACAAGTTCTTCATCAGTTTTAATCTGATCCTTTGCGTTGTGGTTTCTATTATA TCAATCCATCCAAAAATTCAGGAACACCAGCCTCGTTCTGGCCTCCTGCAGTCCTCTGTC ATAACCCTCTACACCATATACCTCACATGGTCAGCCATGTCCAATGAACCTGATCAGTCC TGCAACCCTGGCCTGTTGAGCATCATTACACGCATGACCTCACCAACATTGGCTCCTCCT GGAAATGCAACTGCTGCGGTCCCTACCCCTGCTCCACCATCGCAGAGTGGGCCTTTTCTG AGTCGAGAGAATTTTATTGGGCTGATTGTCTTTGTTCTCTCCCTTTTGTATTCTAGCTTC CGCAATTCCACCAATAGCCAAGTAAATAAGCTGACCCTGTCGGGAAGTGACAGCGTGATC CTCCGAGATACAGCTGCCAATGGCGCCAGTGACGAGGAGGATGGGCGGCCCCGGAGGGCT GTGGACAACGAGCGAGAAGGGGTGCAGTACAGCTACTCCATGTTCCACTTCATGCTCTTC TCGGCCTCCCTCTACATCATGATGACCCTGACCAACTGGTACAGCCCTGACGCAAACTTC CAGAGCATGACCAGCAAGTGGCCGGCTGTGTGGGTCAAGATCAGCTCCAGCTGGGTCTGC CTCCTCCTCTACGTCTGGACCCTTGTGGCCCCACTCGTCCTCACCAATCGAGACTTCAGC TGAAGCATGAGTGCCAAGGACGCCTCTGGAATTCATAAAGGTCTCCTTTGCTGAAAGCTC ATACCCGTTTTACTTTCGCTTCAACTAAAATACTAAGCGAATGCTGTGCAAATAAGACTA TATCCAAGTTTATATCTGAGGGCCAGATTGAATAATGCTTGATGCGGGATCAGAACTTTT CATTTATATCTATATTATGTTTATTTGTAAGGCTATAGAGCAAAAGGAACATTTTGCGTT TTACAGTGAACTACAGCTGTGCTGTGAAGAGAGTTCTTTATTAAGACTTGGAGGTTCCTA CAACTTTGATTTAAAATGTGGGAGAGAAAAATGTTGCATATTTGAGGCCATCATTAATAT ATTTCTATTGTAGTATCCTTAAAAAGCAAAATAATTATAATGATGCTTTTCTATGACAGT TTTCCTCTGTGGAAGTCTTTACTTGTGTGATGCAGGCCTCTGTTCAGTCCTTAAACTCAC AGTGCTTGGTGGAAGGAGTAAGTATGTGAGTCTTGGCACAGAAGAGGGGTTGATGATATG GCTGCTGCTTCTCCATCTTGAGTTTTTTCATTTACTTTTTATATACTACAGCATTGATGC TGCTTGATTCAAGCCTGTGGCTTTGCCAGAAATGTTAATTTCAATAAGTGCTTTGTAGGT TTGGTTAAAGTGAAGATTCACTTGGGAAAACAGTGCGACTTTGGTCTCTGTAATTCTCTT GTTATCAGTATGTAAAAGTACAATGCATGTGAATTTATTATATTTGCACTATAAAAGTCT TTGATTAAAACAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 572-1599, + strand, RNAz p=0.893934 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 572-1599, + strand, RNAz p=0.893934 |
| Aligned organism(s): 62 entry(ies) | More info |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
| 278-475, gnl|bosTau2|chr13 (56246355-56246549) | |
| 278-475, gnl|canFam2|chr24 (34948520-34948744) | |
| 278-475, gnl|danRer3|chr20 (47803306-47803078) | |
| 278-475, gnl|dasNov1|scaffold_33951 (7498-7718) | |
| 278-475, gnl|echTel1|scaffold_181620 (2331-2108) | |
| 278-475, gnl|fr1|chrUn (257830502-257830287) | |
| 278-475, gnl|galGal2|chr20 (5129209-5128997) | |
| 278-475, gnl|hg17|chr20 (42574843-42575064) | |
| 278-475, gnl|Hg17|chr20 (42575051-42574854) | |
| 278-475, gnl|loxAfr1|scaffold_16189 (56796-57015) | |
| 278-475, gnl|mm7|chr2 (163377688-163377911) | |
| 278-475, gnl|Mm7|chr2 (163377896-163377699) | |
| 278-475, gnl|monDom2|scaffold_1 (157289699-157289466) | |
| 278-475, gnl|oryCun1|scaffold_176362 (69463-69684) | |
| 278-475, gnl|panTro1|chr21 (45015601-45015822) | |
| 278-475, gnl|rheMac2|chr10 (19935728-19935507) | |
| 278-475, gnl|rn3|chr3 (154458456-154458679) | |
| 278-475, gnl|tetNig1|chr21 (5659932-5660130) | |
| 278-475, gnl|xenTro1|scaffold_184 (595581-595793) | |
| 552-689, gnl|bosTau2|chr13 (56248836-56248973) | |
| 552-689, gnl|Hg17|chr20 (42572085-42571948) | |
| 552-689, gnl|Mm7|chr2 (163373135-163372998) | |
| 691-862, gnl|bosTau2|chr13 (56249101-56249272) | |
| 691-862, gnl|canFam2|chr24 (34942865-34942990) | |
| 691-862, gnl|danRer3|chr20 (47808056-47807931) | |
| 691-862, gnl|dasNov1|scaffold_33951 (2226-2351) | |
| 691-862, gnl|echTel1|scaffold_196991 (3268-3393) | |
| 691-862, gnl|fr1|chrUn (257831464-257831339) | |
| 691-862, gnl|galGal2|chr20 (5131847-5131722) | |
| 691-862, gnl|hg17|chr20 (42568880-42569005) | |
| 691-862, gnl|Hg17|chr20 (42569052-42568881) | |
| 691-862, gnl|loxAfr1|scaffold_16189 (50161-50286) | |
| 691-862, gnl|mm7|chr2 (163371814-163371939) | |
| 691-862, gnl|Mm7|chr2 (163371986-163371815) | |
| 691-862, gnl|monDom2|scaffold_1 (157296220-157296095) | |
| 691-862, gnl|oryCun1|scaffold_176362 (64351-64476) | |
| 691-862, gnl|panTro1|chr21 (45009507-45009632) | |
| 691-862, gnl|rheMac2|chr10 (19942355-19942230) | |
| 691-862, gnl|rn3|chr3 (154453564-154453689) | |
| 691-862, gnl|tetNig1|chr21 (5659320-5659444) | |
| 691-862, gnl|xenTro1|scaffold_184 (593027-593152) | |
| 952-1136, gnl|bosTau2|chr13 (56251443-56251624) | |
| 952-1136, gnl|canFam2|chr24 (34940935-34941144) | |
| 952-1136, gnl|danRer3|chr19 (39314669-39314849) | |
| 952-1136, gnl|echTel1|scaffold_54252 (1734-1518) | |
| 952-1136, gnl|fr1|chrUn (305751668-305751445) | |
| 952-1136, gnl|galGal2|chr20 (5133078-5132883) | |
| 952-1136, gnl|hg17|chr20 (42565864-42566073) | |
| 952-1136, gnl|Hg17|chr20 (42566051-42565870) | |
| 952-1136, gnl|loxAfr1|scaffold_172640 (134-340) | |
| 952-1136, gnl|mm7|chr2 (163368750-163368962) | |
| 952-1136, gnl|Mm7|chr2 (163368943-163368762) | |
| 952-1136, gnl|monDom2|scaffold_1 (157299624-157299431) | |
| 952-1136, gnl|oryCun1|scaffold_176362 (61518-61724) | |
| 952-1136, gnl|panTro1|chr21 (45006653-45006862) | |
| 952-1136, gnl|rheMac2|chr10 (19945388-19945179) | |
| 952-1136, gnl|rn3|chr3 (154450973-154451184) | |
| 952-1136, gnl|tetNig1|chrUn_random (95084701-95084479) | |
| 952-1136, gnl|xenTro1|scaffold_184 (591645-591845) | |
| 1362-2296, gnl|bosTau2|chr13 (56254364-56255300) | |
| 1362-2296, gnl|Hg17|chr20 (42562492-42561544) | |
| 1362-2296, gnl|Mm7|chr2 (163366472-163365555) |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 278-475, gnl|bosTau2|chr13 (56246355-56246549) | |
| 278-475, gnl|canFam2|chr24 (34948520-34948744) | |
| 278-475, gnl|danRer3|chr20 (47803306-47803078) | |
| 278-475, gnl|dasNov1|scaffold_33951 (7498-7718) | |
| 278-475, gnl|echTel1|scaffold_181620 (2331-2108) | |
| 278-475, gnl|fr1|chrUn (257830502-257830287) | |
| 278-475, gnl|galGal2|chr20 (5129209-5128997) | |
| 278-475, gnl|hg17|chr20 (42574843-42575064) | |
| 278-475, gnl|Hg17|chr20 (42575051-42574854) | |
| 278-475, gnl|loxAfr1|scaffold_16189 (56796-57015) | |
| 278-475, gnl|mm7|chr2 (163377688-163377911) | |
| 278-475, gnl|Mm7|chr2 (163377896-163377699) | |
| 278-475, gnl|monDom2|scaffold_1 (157289699-157289466) | |
| 278-475, gnl|oryCun1|scaffold_176362 (69463-69684) | |
| 278-475, gnl|panTro1|chr21 (45015601-45015822) | |
| 278-475, gnl|rheMac2|chr10 (19935728-19935507) | |
| 278-475, gnl|rn3|chr3 (154458456-154458679) | |
| 278-475, gnl|tetNig1|chr21 (5659932-5660130) | |
| 278-475, gnl|xenTro1|scaffold_184 (595581-595793) | |
| 552-689, gnl|bosTau2|chr13 (56248836-56248973) | |
| 552-689, gnl|Hg17|chr20 (42572085-42571948) | |
| 552-689, gnl|Mm7|chr2 (163373135-163372998) | |
| 691-862, gnl|bosTau2|chr13 (56249101-56249272) | |
| 691-862, gnl|canFam2|chr24 (34942865-34942990) | |
| 691-862, gnl|danRer3|chr20 (47808056-47807931) | |
| 691-862, gnl|dasNov1|scaffold_33951 (2226-2351) | |
| 691-862, gnl|echTel1|scaffold_196991 (3268-3393) | |
| 691-862, gnl|fr1|chrUn (257831464-257831339) | |
| 691-862, gnl|galGal2|chr20 (5131847-5131722) | |
| 691-862, gnl|hg17|chr20 (42568880-42569005) | |
| 691-862, gnl|Hg17|chr20 (42569052-42568881) | |
| 691-862, gnl|loxAfr1|scaffold_16189 (50161-50286) | |
| 691-862, gnl|mm7|chr2 (163371814-163371939) | |
| 691-862, gnl|Mm7|chr2 (163371986-163371815) | |
| 691-862, gnl|monDom2|scaffold_1 (157296220-157296095) | |
| 691-862, gnl|oryCun1|scaffold_176362 (64351-64476) | |
| 691-862, gnl|panTro1|chr21 (45009507-45009632) | |
| 691-862, gnl|rheMac2|chr10 (19942355-19942230) | |
| 691-862, gnl|rn3|chr3 (154453564-154453689) | |
| 691-862, gnl|tetNig1|chr21 (5659320-5659444) | |
| 691-862, gnl|xenTro1|scaffold_184 (593027-593152) | |
| 952-1136, gnl|bosTau2|chr13 (56251443-56251624) | |
| 952-1136, gnl|canFam2|chr24 (34940935-34941144) | |
| 952-1136, gnl|danRer3|chr19 (39314669-39314849) | |
| 952-1136, gnl|echTel1|scaffold_54252 (1734-1518) | |
| 952-1136, gnl|fr1|chrUn (305751668-305751445) | |
| 952-1136, gnl|galGal2|chr20 (5133078-5132883) | |
| 952-1136, gnl|hg17|chr20 (42565864-42566073) | |
| 952-1136, gnl|Hg17|chr20 (42566051-42565870) | |
| 952-1136, gnl|loxAfr1|scaffold_172640 (134-340) | |
| 952-1136, gnl|mm7|chr2 (163368750-163368962) | |
| 952-1136, gnl|Mm7|chr2 (163368943-163368762) | |
| 952-1136, gnl|monDom2|scaffold_1 (157299624-157299431) | |
| 952-1136, gnl|oryCun1|scaffold_176362 (61518-61724) | |
| 952-1136, gnl|panTro1|chr21 (45006653-45006862) | |
| 952-1136, gnl|rheMac2|chr10 (19945388-19945179) | |
| 952-1136, gnl|rn3|chr3 (154450973-154451184) | |
| 952-1136, gnl|tetNig1|chrUn_random (95084701-95084479) | |
| 952-1136, gnl|xenTro1|scaffold_184 (591645-591845) | |
| 1362-2296, gnl|bosTau2|chr13 (56254364-56255300) | |
| 1362-2296, gnl|Hg17|chr20 (42562492-42561544) | |
| 1362-2296, gnl|Mm7|chr2 (163366472-163365555) |
| Expressed library(ies): 51 entry(ies) | More info |
| Expressed library(ies): 51 entry(ies) | Help | Less info |
| cte (1.17096) | |
| tra (0.984737) | |
| cbe (0.956938) | |
| sug (0.763747) | |
| gul (0.710353) | |
| fat (0.58971) | |
| aor (0.585823) | |
| rec (0.519211) | |
| bla (0.497389) | |
| cki (0.495704) | |
| liv (0.438853) | |
| cty (0.41632) | |
| nmm (0.398406) | |
| cov (0.396458) | |
| eje (0.395335) | |
| ill (0.351185) | |
| sin (0.349895) | |
| mga (0.32041) | |
| tbr (0.308356) | |
| sme (0.305437) | |
| isp (0.300752) | |
| lnt (0.284616) | |
| lyg (0.266205) | |
| ute (0.265569) | |
| kid (0.259471) | |
| ova (0.258264) | |
| thg (0.253582) | |
| pgl (0.236967) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| hea (0.204499) | |
| col (0.195008) | |
| sag (0.182715) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| nco (0.161734) | |
| lun (0.150489) | |
| ski (0.146735) | |
| lin (0.145603) | |
| spl (0.143184) | |
| csk (0.140746) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| ret (0.128733) | |
| clu (0.119646) | |
| med (0.116252) | |
| jca (0.11396) | |
| spc (0.113366) | |
| ldo (0.0970026) |
| Expressed library(ies): 51 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (1.17096) | |
| tra (0.984737) | |
| cbe (0.956938) | |
| sug (0.763747) | |
| gul (0.710353) | |
| fat (0.58971) | |
| aor (0.585823) | |
| rec (0.519211) | |
| bla (0.497389) | |
| cki (0.495704) | |
| liv (0.438853) | |
| cty (0.41632) | |
| nmm (0.398406) | |
| cov (0.396458) | |
| eje (0.395335) | |
| ill (0.351185) | |
| sin (0.349895) | |
| mga (0.32041) | |
| tbr (0.308356) | |
| sme (0.305437) | |
| isp (0.300752) | |
| lnt (0.284616) | |
| lyg (0.266205) | |
| ute (0.265569) | |
| kid (0.259471) | |
| ova (0.258264) | |
| thg (0.253582) | |
| pgl (0.236967) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| hea (0.204499) | |
| col (0.195008) | |
| sag (0.182715) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| nco (0.161734) | |
| lun (0.150489) | |
| ski (0.146735) | |
| lin (0.145603) | |
| spl (0.143184) | |
| csk (0.140746) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| ret (0.128733) | |
| clu (0.119646) | |
| med (0.116252) | |
| jca (0.11396) | |
| spc (0.113366) | |
| ldo (0.0970026) |