Ss1.1-Pig4-TMW8062H20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAAGCAGGAGCTGTGGTCAGAAGCTCGTGTCCCAGCCGGTAGGGCCTGCTCTCTCCCAC CATGGCGGCCCGAGGCTACGGCTATTATCGTGCTGTGATCTTCTCAGCCATGTTTGGAGG CTACAGCCTGTACTACTTCAACCGCAAGACCTTCTCCTTTGTCATGCCGTCGCTGGTGGA AGAGATCCGTCTGGACAAGGATGACTTGGGGCTCATCACCAGTAGCCAGTCAGCAGCCTA TGCCATCAGCAAGTTTGTGAGTGGGGTGCTGTCTGACCAGATGAGTGCTCGCTGGCTCTT CTCCTCTGGGCTGCTTCTTGTTGGCCTGGTCAATGTCATCTTTTCCTGGAGCTCCACAGT ACCTGTCTTCGCTGCTCTCTGGTTCCTCAATGGCCTGGCCCAGGGGCTGGGCTGGCCCCC GTGTGGCAAGATCTTGCGGAAGTGGTTTGAGCCATCTCAGTTTGGCACTTGGTGGGCCAT CCTATCAACTAGCATGAACCTGGCTGGAGGGCTGGGCCCCATCCTGGCAACCATCCTCGC CCAGAGCTATAGCTGGCGTAGCACGCTGGCCCTGTCTGGGGCCTTGTGTGTGGTTGTCTC CTTCCTCTGTCTCCTGCTCATCCACAATGAACCTGCTGATGTTGGACTCCGCAACCTGGA CCCTATCCCCTCCAAGGGCAAGAAGGGCTCCTCAAAGGAGGAGAGTACCTTACAGGAGCT GCTGCTGACCCCCTACCTGTGGGTGCTCTCCATTGGCTACCTTGTGGTATTTGGCGTAAA GACGTGCTGTACTGACTGGGGCCAGTTCTTCCTTATCCAGGAGAAAGGACAGTCAGCCCT CGTGGGTAGCTCCTACATGAGTGCCCTGGAGGTTGGGGGCCTTGTAGGCAGCATCGCAGC TGGCTACTTGTCAGACCGGGCCATGGCAAAGGCAGGGCTGTCCATCCACGGGAACCCCCG CCATGGCCTGCTGCTGCTCATGATGGCTGGCATGACAGCATCCATGTACCTCTTCCGGGT AACTGTGACCAGTGACTCCCCTAAGCTCTGGATCCTGGTGTTGGGAGCTGTGTTTGGTTT CTCCTCTTATGGTCCCATTGCCTTGTTTGGAGTCATAGCCAATGAGAGTGCCCCTCCCAA CCTGTGTGGCACCTCCCATGCCATTGTGGGACTCATGGCCAATGTGGGTGGCTTTCTGGC TGGGTTGCCCTTCAGCACCATTGCCAAGCATTACAGCTGGAGCACAGCCTTCTGGGTGGC TGAAGTGATCTGTGCGGCCAGTACAGGTGCCTTCTTCCTCCTACGAAACATCCGCACCAA GATGGGCCGAGTGCCAAAGAAGGCTGAGTGAAGACCGTGCAAACTCTGGAGCGTCCTTTC TCACCTGTGTCATGGGGGTTGGGAAAGGGAGGGAGGGGGCTGCTCTGGCAGCACCACCTT TGACTTTCTTTTTCTGCACCTTTTCCCTCACCCAGGTGGTGCTGGAAGTTATCAGTGGCT AATGAGGTCCCAGCTCCCCATCCTATCTCTATTTAAAAAACAAGTTTTGGGAGTTCTCAC TGTAGCACAGTGGGTTAGGAATCCAATTGCAGTGGCTTGGGTTGCTGCAGAGGTGTAGGT TCAACCCCTGGCCCAGCATAGCAGGTTAAAGGACCCAGCATTGCTACAGCTGCAGTTCGG ATTAGATTCTTGGCCCAGGAACTTCCATATGCCTCAGGTGCAGCCATAAAAATTAAAAAA AAAAAGAGAGAGAGAGAGAGAGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAAGCAGGAGCTGTGGTCAGAAGCTCGTGTCCCAGCCGGTAGGGCCTGCTCTCTCCCAC CATGGCGGCCCGAGGCTACGGCTATTATCGTGCTGTGATCTTCTCAGCCATGTTTGGAGG CTACAGCCTGTACTACTTCAACCGCAAGACCTTCTCCTTTGTCATGCCGTCGCTGGTGGA AGAGATCCGTCTGGACAAGGATGACTTGGGGCTCATCACCAGTAGCCAGTCAGCAGCCTA TGCCATCAGCAAGTTTGTGAGTGGGGTGCTGTCTGACCAGATGAGTGCTCGCTGGCTCTT CTCCTCTGGGCTGCTTCTTGTTGGCCTGGTCAATGTCATCTTTTCCTGGAGCTCCACAGT ACCTGTCTTCGCTGCTCTCTGGTTCCTCAATGGCCTGGCCCAGGGGCTGGGCTGGCCCCC GTGTGGCAAGATCTTGCGGAAGTGGTTTGAGCCATCTCAGTTTGGCACTTGGTGGGCCAT CCTATCAACTAGCATGAACCTGGCTGGAGGGCTGGGCCCCATCCTGGCAACCATCCTCGC CCAGAGCTATAGCTGGCGTAGCACGCTGGCCCTGTCTGGGGCCTTGTGTGTGGTTGTCTC CTTCCTCTGTCTCCTGCTCATCCACAATGAACCTGCTGATGTTGGACTCCGCAACCTGGA CCCTATCCCCTCCAAGGGCAAGAAGGGCTCCTCAAAGGAGGAGAGTACCTTACAGGAGCT GCTGCTGACCCCCTACCTGTGGGTGCTCTCCATTGGCTACCTTGTGGTATTTGGCGTAAA GACGTGCTGTACTGACTGGGGCCAGTTCTTCCTTATCCAGGAGAAAGGACAGTCAGCCCT CGTGGGTAGCTCCTACATGAGTGCCCTGGAGGTTGGGGGCCTTGTAGGCAGCATCGCAGC TGGCTACTTGTCAGACCGGGCCATGGCAAAGGCAGGGCTGTCCATCCACGGGAACCCCCG CCATGGCCTGCTGCTGCTCATGATGGCTGGCATGACAGCATCCATGTACCTCTTCCGGGT AACTGTGACCAGTGACTCCCCTAAGCTCTGGATCCTGGTGTTGGGAGCTGTGTTTGGTTT CTCCTCTTATGGTCCCATTGCCTTGTTTGGAGTCATAGCCAATGAGAGTGCCCCTCCCAA CCTGTGTGGCACCTCCCATGCCATTGTGGGACTCATGGCCAATGTGGGTGGCTTTCTGGC TGGGTTGCCCTTCAGCACCATTGCCAAGCATTACAGCTGGAGCACAGCCTTCTGGGTGGC TGAAGTGATCTGTGCGGCCAGTACAGGTGCCTTCTTCCTCCTACGAAACATCCGCACCAA GATGGGCCGAGTGCCAAAGAAGGCTGAGTGAAGACCGTGCAAACTCTGGAGCGTCCTTTC TCACCTGTGTCATGGGGGTTGGGAAAGGGAGGGAGGGGGCTGCTCTGGCAGCACCACCTT TGACTTTCTTTTTCTGCACCTTTTCCCTCACCCAGGTGGTGCTGGAAGTTATCAGTGGCT AATGAGGTCCCAGCTCCCCATCCTATCTCTATTTAAAAAACAAGTTTTGGGAGTTCTCAC TGTAGCACAGTGGGTTAGGAATCCAATTGCAGTGGCTTGGGTTGCTGCAGAGGTGTAGGT TCAACCCCTGGCCCAGCATAGCAGGTTAAAGGACCCAGCATTGCTACAGCTGCAGTTCGG ATTAGATTCTTGGCCCAGGAACTTCCATATGCCTCAGGTGCAGCCATAAAAATTAAAAAA AAAAAGAGAGAGAGAGAGAGAGAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1184-1302, + strand, RNAz p=0.821146 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1184-1302, + strand, RNAz p=0.821146 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 14-210, gnl|bosTau2|chr15 (14211060-14210863) | |
| 14-210, gnl|Hg17|chr11 (118405338-118405141) | |
| 14-210, gnl|Mm7|chr9 (44332758-44332967) | |
| 441-687, gnl|bosTau2|chr15 (14209531-14209285) | |
| 441-687, gnl|Hg17|chr11 (118403794-118403547) | |
| 441-687, gnl|Mm7|chr9 (44334138-44334384) | |
| 927-1045, gnl|bosTau2|chr15 (14207824-14207706) | |
| 927-1045, gnl|canFam2|chr5 (17834825-17834703) | |
| 927-1045, gnl|danRer3|chrNA (220537629-220537731) | |
| 927-1045, gnl|echTel1|scaffold_311361 (42573-42695) | |
| 927-1045, gnl|fr1|chrUn (53704808-53704913) | |
| 927-1045, gnl|galGal2|chr24 (5313315-5313436) | |
| 927-1045, gnl|hg17|chr11 (118401882-118402004) | |
| 927-1045, gnl|Hg17|chr11 (118402005-118401887) | |
| 927-1045, gnl|loxAfr1|scaffold_39535 (10027-9905) | |
| 927-1045, gnl|mm7|chr9 (44335886-44335764) | |
| 927-1045, gnl|Mm7|chr9 (44335761-44335879) | |
| 927-1045, gnl|monDom2|scaffold_2 (119607249-119607128) | |
| 927-1045, gnl|oryCun1|scaffold_201925 (54512-54634) | |
| 927-1045, gnl|panTro1|chr9 (120420357-120420479) | |
| 927-1045, gnl|rheMac2|chr14 (117430694-117430816) | |
| 927-1045, gnl|rn3|chr8 (47377319-47377197) | |
| 927-1045, gnl|tetNig1|chrUn_random (13581034-13581139) | |
| 927-1045, gnl|xenTro1|scaffold_18 (302211-302089) | |
| 1184-1549, gnl|bosTau2|chr15 (14206849-14206475) | |
| 1184-1549, gnl|Hg17|chr11 (118400997-118400621) | |
| 1184-1549, gnl|Mm7|chr9 (44336646-44337014) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 14-210, gnl|bosTau2|chr15 (14211060-14210863) | |
| 14-210, gnl|Hg17|chr11 (118405338-118405141) | |
| 14-210, gnl|Mm7|chr9 (44332758-44332967) | |
| 441-687, gnl|bosTau2|chr15 (14209531-14209285) | |
| 441-687, gnl|Hg17|chr11 (118403794-118403547) | |
| 441-687, gnl|Mm7|chr9 (44334138-44334384) | |
| 927-1045, gnl|bosTau2|chr15 (14207824-14207706) | |
| 927-1045, gnl|canFam2|chr5 (17834825-17834703) | |
| 927-1045, gnl|danRer3|chrNA (220537629-220537731) | |
| 927-1045, gnl|echTel1|scaffold_311361 (42573-42695) | |
| 927-1045, gnl|fr1|chrUn (53704808-53704913) | |
| 927-1045, gnl|galGal2|chr24 (5313315-5313436) | |
| 927-1045, gnl|hg17|chr11 (118401882-118402004) | |
| 927-1045, gnl|Hg17|chr11 (118402005-118401887) | |
| 927-1045, gnl|loxAfr1|scaffold_39535 (10027-9905) | |
| 927-1045, gnl|mm7|chr9 (44335886-44335764) | |
| 927-1045, gnl|Mm7|chr9 (44335761-44335879) | |
| 927-1045, gnl|monDom2|scaffold_2 (119607249-119607128) | |
| 927-1045, gnl|oryCun1|scaffold_201925 (54512-54634) | |
| 927-1045, gnl|panTro1|chr9 (120420357-120420479) | |
| 927-1045, gnl|rheMac2|chr14 (117430694-117430816) | |
| 927-1045, gnl|rn3|chr8 (47377319-47377197) | |
| 927-1045, gnl|tetNig1|chrUn_random (13581034-13581139) | |
| 927-1045, gnl|xenTro1|scaffold_18 (302211-302089) | |
| 1184-1549, gnl|bosTau2|chr15 (14206849-14206475) | |
| 1184-1549, gnl|Hg17|chr11 (118400997-118400621) | |
| 1184-1549, gnl|Mm7|chr9 (44336646-44337014) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| cli (0.458435) | |
| ill (0.175593) | |
| cki (0.165235) | |
| eru (0.120048) | |
| eje (0.0988338) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.458435) | |
| ill (0.175593) | |
| cki (0.165235) | |
| eru (0.120048) | |
| eje (0.0988338) |