Ss1.1-Pig4-TMW8062H21.5
|
TTACATTTACAAATATTAAATTTATTATAACTAGAGTGGATTTAATGGTTCTCAGATTTG
GCCACCTTATAGCTCCATTTAAGGAGGGGGTTTTAACAGAAAAATGCATAACTTGGTCAA
ATTACTTACACATTAAAAAAGGAAAAAACTTCTAAAAAGGAAAACAAGAAAAGCAACCCT
TCAGTTTCACATAATTAAAGAAGAGGATAAAGCACACAAGCTACATCATAGCTAAATTTA
CCAAACCAACCAAAGCCAGGGGGGATTTCTTTTCTGATTATGTGTCATAAAAAGGTCCAC
TGTCTTATATACACATGTATATAATGTTACATTCCATCACTGTAAAAAGTCCCCGTTGCC
CCCTCCCCCCAAAAGTTTCAGCCTAGTCTCCAAACTTGGACAGCGGTGCTCGCTCCTGCT
GCCTGTGCAGTTCGTTCTCCGTCAGCAGCTGGAGGTTCTCGGCGCGCAGGCGGTCCAGCT
CCAGCTCCAGCTCCCGCACACGCGCGTCGTCGCCGCCGCCCAGCCGCTTGCTTTCCAGCC
GCAGCCGGTTGTTCTCGTCCTCCATGCGCGAGAGGCACTTCTCCAGCTCCAAGTACTCTC
TGATGAGCTCCTGCTTGCTCATGTTCTGCAGGCTCTCCGCGTGGTACCGCTCGTAGGTCT
CCGAGAAGTCCCGCTGCAGAAACTCGCTGCCGTCTCCTCCCATTCCGTCGCTGCCCCCAT
CCTCCTCGCCTGCTTCTTCCATAAAGTCCTCATCGCTGGTGTCGTCGGATTTGGCAGCAG
CCCGTTTGGGATAGAGGCCGGTTTTAAGATCCGGCTCCTCTTGGTCGTGATCATCCATGA
GGAACTGCGTGGTGTTATAGGGAGCGACCGGCTGGCCCTTGGCGAACATCTCGGCTCGAA
TCCTGGAAGCTCGAAGGCTCTCTTTCTCGTCGAACTTTTTCTTCTCTTCCCAGGTTAGCG
TGTAGTACGGTTTCCAAAGTCGCTTCTTCTTGGAGGGGCGTCTCCTATGTTTTTTCTTGC
CCAATTGTCTCTGCTGCTGTCCCCACGCCTCCTCGCCCCCTGCAGCAGAAGCCCCCAACT
TGTTGGCTTCGGGCCTCTGTTCCCCTCCCGCCGCCGGCGGGGGAGCTCCGCCAGCGGACA
AGTCGTCCCCATTCTGGCCCTTCTCACCCGCTTCAGGGCAGCTGGATTCTGGGCTGACCT
GGGTTTGCAAGGGAGGCAGCTGAGGCTCCTGGCTCCCTTCCCCCTCCTGTCCCGGACGGC
CACCCGACTGGGGGGACGCTCTCGATTGCCACCTACTGTCCTCCTCGGGCACTCGCTCCT
CCGCGCCTGGGGGGCGATCGGGGTTCCGCTCTTCAT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTACATTTACAAATATTAAATTTATTATAACTAGAGTGGATTTAATGGTTCTCAGATTTG
GCCACCTTATAGCTCCATTTAAGGAGGGGGTTTTAACAGAAAAATGCATAACTTGGTCAA
ATTACTTACACATTAAAAAAGGAAAAAACTTCTAAAAAGGAAAACAAGAAAAGCAACCCT
TCAGTTTCACATAATTAAAGAAGAGGATAAAGCACACAAGCTACATCATAGCTAAATTTA
CCAAACCAACCAAAGCCAGGGGGGATTTCTTTTCTGATTATGTGTCATAAAAAGGTCCAC
TGTCTTATATACACATGTATATAATGTTACATTCCATCACTGTAAAAAGTCCCCGTTGCC
CCCTCCCCCCAAAAGTTTCAGCCTAGTCTCCAAACTTGGACAGCGGTGCTCGCTCCTGCT
GCCTGTGCAGTTCGTTCTCCGTCAGCAGCTGGAGGTTCTCGGCGCGCAGGCGGTCCAGCT
CCAGCTCCAGCTCCCGCACACGCGCGTCGTCGCCGCCGCCCAGCCGCTTGCTTTCCAGCC
GCAGCCGGTTGTTCTCGTCCTCCATGCGCGAGAGGCACTTCTCCAGCTCCAAGTACTCTC
TGATGAGCTCCTGCTTGCTCATGTTCTGCAGGCTCTCCGCGTGGTACCGCTCGTAGGTCT
CCGAGAAGTCCCGCTGCAGAAACTCGCTGCCGTCTCCTCCCATTCCGTCGCTGCCCCCAT
CCTCCTCGCCTGCTTCTTCCATAAAGTCCTCATCGCTGGTGTCGTCGGATTTGGCAGCAG
CCCGTTTGGGATAGAGGCCGGTTTTAAGATCCGGCTCCTCTTGGTCGTGATCATCCATGA
GGAACTGCGTGGTGTTATAGGGAGCGACCGGCTGGCCCTTGGCGAACATCTCGGCTCGAA
TCCTGGAAGCTCGAAGGCTCTCTTTCTCGTCGAACTTTTTCTTCTCTTCCCAGGTTAGCG
TGTAGTACGGTTTCCAAAGTCGCTTCTTCTTGGAGGGGCGTCTCCTATGTTTTTTCTTGC
CCAATTGTCTCTGCTGCTGTCCCCACGCCTCCTCGCCCCCTGCAGCAGAAGCCCCCAACT
TGTTGGCTTCGGGCCTCTGTTCCCCTCCCGCCGCCGGCGGGGGAGCTCCGCCAGCGGACA
AGTCGTCCCCATTCTGGCCCTTCTCACCCGCTTCAGGGCAGCTGGATTCTGGGCTGACCT
GGGTTTGCAAGGGAGGCAGCTGAGGCTCCTGGCTCCCTTCCCCCTCCTGTCCCGGACGGC
CACCCGACTGGGGGGACGCTCTCGATTGCCACCTACTGTCCTCCTCGGGCACTCGCTCCT
CCGCGCCTGGGGGGCGATCGGGGTTCCGCTCTTCAT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-1037, gnl|bosTau2|chr19 (37199068-37200098) |
|
1-1037, gnl|Hg17|chr17 (40583801-40582652) |
|
1-1037, gnl|Mm7|chr11 (103227418-103226274) |
| |
|
1117-1356, gnl|bosTau2|chr19 (37200097-37200336) |
|
1117-1356, gnl|canFam2|chr9 (21703397-21702997) |
|
1117-1356, gnl|hg17|chr17 (40582251-40582655) |
|
1117-1356, gnl|Hg17|chr17 (40582653-40582414) |
|
1117-1356, gnl|loxAfr1|scaffold_14460 (507-108) |
|
1117-1356, gnl|mm7|chr11 (103225887-103226274) |
|
1117-1356, gnl|Mm7|chr11 (103226383-103226036) |
|
1117-1356, gnl|monDom2|scaffold_18 (41297260-41296874) |
|
1117-1356, gnl|oryCun1|scaffold_205221 (94038-94384) |
|
1117-1356, gnl|panTro1|chr19 (43862721-43863125) |
|
1117-1356, gnl|rheMac2|chr16 (55245873-55246279) |
|
1117-1356, gnl|rn3|chr10 (92305242-92305629) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-1037, gnl|bosTau2|chr19 (37199068-37200098) |
|
1-1037, gnl|Hg17|chr17 (40583801-40582652) |
|
1-1037, gnl|Mm7|chr11 (103227418-103226274) |
| |
|
1117-1356, gnl|bosTau2|chr19 (37200097-37200336) |
|
1117-1356, gnl|canFam2|chr9 (21703397-21702997) |
|
1117-1356, gnl|hg17|chr17 (40582251-40582655) |
|
1117-1356, gnl|Hg17|chr17 (40582653-40582414) |
|
1117-1356, gnl|loxAfr1|scaffold_14460 (507-108) |
|
1117-1356, gnl|mm7|chr11 (103225887-103226274) |
|
1117-1356, gnl|Mm7|chr11 (103226383-103226036) |
|
1117-1356, gnl|monDom2|scaffold_18 (41297260-41296874) |
|
1117-1356, gnl|oryCun1|scaffold_205221 (94038-94384) |
|
1117-1356, gnl|panTro1|chr19 (43862721-43863125) |
|
1117-1356, gnl|rheMac2|chr16 (55245873-55246279) |
|
1117-1356, gnl|rn3|chr10 (92305242-92305629) |
|
fcc (0.39557) |
|
pgl (0.236967) |
|
ece (0.229305) |
|
cty (0.20816) |
|
nep (0.183925) |
|
ton (0.1755) |
|
eye (0.170503) |
|
lun (0.150489) |
|
isp (0.150376) |
|
spl (0.143184) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
cst (0.140036) |
|
eep (0.122564) |
|
cly (0.120642) |
|
eru (0.120048) |
|
fcc (0.39557) |
|
pgl (0.236967) |
|
ece (0.229305) |
|
cty (0.20816) |
|
nep (0.183925) |
|
ton (0.1755) |
|
eye (0.170503) |
|
lun (0.150489) |
|
isp (0.150376) |
|
spl (0.143184) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
cst (0.140036) |
|
eep (0.122564) |
|
cly (0.120642) |
|
eru (0.120048) |
