Non-Coding RNA Search

Ss1.1-Pig4-TMW8062I20.3

Sequence:


               
               GCCAGCCGCCAGGCCCCCGGGACCGAGCGGCGCCCAGACCCCCGGCCCCGCCCCGGAGGC
AGCCGGCCCCGCAGTTCAGCGACGTGAGCAGCGACGACGACGAGGACAGGCTCGTGATCG
CGACCTAGGGGCTTCCCATCTGGGGGTTTTGTTTGGTTTTTCGGTTTTTTCTATATAACA
CTTAAAGGTTTCTTTGAAAACCCTCGTTTCCTTAAAGCACATTTTTCTGACATAAACTCA
TGACTAATCTTTGTGCAATCATGAACTTTTGACCAATAATTGTTGTTTTGTGTCAGCTCC
AGCCATTTTTGTACATGTTGTATAGACACTTGTGCCTTTTAGGAGTTTTATGTTTAGAAA
CTGTACAGATTGTTGAATATATACATAAAAGAGATATTATATGTATATGAAAACCAGGTA
GGTATTTGTGTTTAGCAAGAAAAACCTGTCAGATAAATCAAATGATTAAATTATATGTTG
CACTGTTAAATATAAATTTTTATGGCTGTGGGGCAGAGTTTCTGTGTATAAGTTAGTATG
TAAACTCCGTATTTATTGTATTCATATTAGTCTTTGAAAATGGGTCTGTCCTTCTTGTGT
AAGACAGGTAACTTTACACTTCAGACAGATTTTCTGTGTAATGAAATGTTTCAGTAAAAT
ACTGTTTACCGACTTTACCATCGCTTTAGTCGCACCTTCTTTGTGTCACGTCCCGAGCAG
CAGTCTGCTTTCGGAAAATAGCCCTAGATTACCGTCCTCCACACACTTCCCCCCCACACT
CATATTTCTGAGAAATGAGGGCTTTCGTGGTGTTACTGCCGTGGGAAGCGCCGTGCAGCC
CGCTTAGCCAAGACGCCCATTTTTCTAATTTGCGATGAAACACTTTCTGTAGGTCCAGAG
AGCACACAGCCAGAAACGGGCAAAGGTGCTAAATGTGGGAATGAGGACTCCTGGTAAATG
TAACATTAGTCACAAAGTAATCACCCTGGGAAACCCGGTTCCTCAGGCTGCGGCCCAGGC
CTGCCGTCCTTTCTGTCTCTCTGCCCTGCATGTTTACCCCGAGCGCTCTGTCTGGGACCA
AACTACAGAGGGTCCAGGATTTACAGAGGAATTCAATTCCGACATCTAAATTACTTCCTG
TCCTGAGAGGCTTAACTTACTGCAGCAAATGGGGTGGAATCCACAATTGCCACTGCAGTG
ATTCGCATTATTACTTGATCACTGTAGACGCTACATTTGTGAAAAAAAAATTTTAATGTT
GGAACTTAAATACTTGGCACCTTATTAAAACCCTGTGTTCATGTTTTTAAAGGCCTACTG
CATGAAGATTTCAGCTCTATGAAGTTGGTGAGACGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCAGCCGCCAGGCCCCCGGGACCGAGCGGCGCCCAGACCCCCGGCCCCGCCCCGGAGGC
AGCCGGCCCCGCAGTTCAGCGACGTGAGCAGCGACGACGACGAGGACAGGCTCGTGATCG
CGACCTAGGGGCTTCCCATCTGGGGGTTTTGTTTGGTTTTTCGGTTTTTTCTATATAACA
CTTAAAGGTTTCTTTGAAAACCCTCGTTTCCTTAAAGCACATTTTTCTGACATAAACTCA
TGACTAATCTTTGTGCAATCATGAACTTTTGACCAATAATTGTTGTTTTGTGTCAGCTCC
AGCCATTTTTGTACATGTTGTATAGACACTTGTGCCTTTTAGGAGTTTTATGTTTAGAAA
CTGTACAGATTGTTGAATATATACATAAAAGAGATATTATATGTATATGAAAACCAGGTA
GGTATTTGTGTTTAGCAAGAAAAACCTGTCAGATAAATCAAATGATTAAATTATATGTTG
CACTGTTAAATATAAATTTTTATGGCTGTGGGGCAGAGTTTCTGTGTATAAGTTAGTATG
TAAACTCCGTATTTATTGTATTCATATTAGTCTTTGAAAATGGGTCTGTCCTTCTTGTGT
AAGACAGGTAACTTTACACTTCAGACAGATTTTCTGTGTAATGAAATGTTTCAGTAAAAT
ACTGTTTACCGACTTTACCATCGCTTTAGTCGCACCTTCTTTGTGTCACGTCCCGAGCAG
CAGTCTGCTTTCGGAAAATAGCCCTAGATTACCGTCCTCCACACACTTCCCCCCCACACT
CATATTTCTGAGAAATGAGGGCTTTCGTGGTGTTACTGCCGTGGGAAGCGCCGTGCAGCC
CGCTTAGCCAAGACGCCCATTTTTCTAATTTGCGATGAAACACTTTCTGTAGGTCCAGAG
AGCACACAGCCAGAAACGGGCAAAGGTGCTAAATGTGGGAATGAGGACTCCTGGTAAATG
TAACATTAGTCACAAAGTAATCACCCTGGGAAACCCGGTTCCTCAGGCTGCGGCCCAGGC
CTGCCGTCCTTTCTGTCTCTCTGCCCTGCATGTTTACCCCGAGCGCTCTGTCTGGGACCA
AACTACAGAGGGTCCAGGATTTACAGAGGAATTCAATTCCGACATCTAAATTACTTCCTG
TCCTGAGAGGCTTAACTTACTGCAGCAAATGGGGTGGAATCCACAATTGCCACTGCAGTG
ATTCGCATTATTACTTGATCACTGTAGACGCTACATTTGTGAAAAAAAAATTTTAATGTT
GGAACTTAAATACTTGGCACCTTATTAAAACCCTGTGTTCATGTTTTTAAAGGCCTACTG
CATGAAGATTTCAGCTCTATGAAGTTGGTGAGACGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               580-699, - strand, RNAz p=0.960965

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               580-699, - strand, RNAz p=0.960965

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               149-827, gnl|bosTau2|chr23 (33765107-33764433)
               

               
               149-827, gnl|Hg17|chr6 (12272690-12273367)
               

               
               149-827, gnl|Mm7|chr13 (41625294-41625914)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               149-827, gnl|bosTau2|chr23 (33765107-33764433)
               

               
               149-827, gnl|Hg17|chr6 (12272690-12273367)
               

               
               149-827, gnl|Mm7|chr13 (41625294-41625914)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fco (0.314416)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)

	149-827, gnl\|bosTau2\|chr23 (33765107-33764433)
	149-827, gnl\|Hg17\|chr6 (12272690-12273367)
	149-827, gnl\|Mm7\|chr13 (41625294-41625914)