Ss1.1-Pig4-TMW8062K23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAGAGTTATTTGTATTTTGAAGAAAAAGACTTCGTGGATAAAGCAGAGAAGAGCCTAAA GCAGACTCCCCATAGCGAGATCATTTTTTATAAAAATGGTGTCAACCAAGGCGTGGCTTA CAAAGATATTTTCGAGGGGGTTTACTTTCCGGCCATCTCACTATACAAGAGCTGCACGGT CTCCATTAACTTTGGACCATGCTTCAAGTATCCGCCGAAGGATCTGGCTTACCGCCCCAT GAGTGACATGGGCTGGGGCGCCGTGGTCGAACACACTCTGGCTGATGTTTTGTATCACGT GGAGACAGAAGTGGATGGGAGGCGGAGTCCCCCCTGGGAACCCTGACCAAGCCCCCTTTT CTTTGCAGACACGGACTTTTCTGGGGAATAATATGAGGGGGTTTTGTTTTTGTTTTTCAC CTGTCGCAAATGTTTTCCCGAAGACACTGCAGAACACAGCCTCTGCTGTAGCAAGGTAAA GGCCAGGTGGCCCTGGGAGACTCCCTGCCCTGCAACACTCCCTTCAGTGACGGCCCTCAC TCTGCGCCACAGCCCAGCGGCTGCTGGCCTGCAATCCCTTCAGTGCCCTGCACACTGGGG CTGTACCACCTACTCCGCCAGCTGGGACTTGTTATCTTATGGCGTTGTCTAAGAAATGGG TGATCTTGTCCAAGCAGCTAACTTATTTAAAGGCATTTCCTTCTATGAGCATCACCTCCA TCCCACCAGATTCCCAAGGAGGTGGTGGGCCTGTTTCCCAGAACAGCTGAAATCAGTGGC TATATTCTAAACCTGTCTAAAAGCCTTTTCCTTTTGGTGTGGGTGTGTCTTTATTATTAA TTTCGAGATATGCTTTTGAACACTGGGATCTCTGAAGCTACTAGGTCTGTAGAACTGTAA TTGTGAAAGGAACTTGCTTGCAGCTTTAACAATTAGAAACTTTCCAAATAAAACTTGTCT TCGAGTGTGTGGGGCACTTTGCTTCCCTATCAGGTTGAGGTCTCTGTGGTGACAACTTCG GAAAGGTGGCCATTCTGAGGAAGGGGAGCTAGCCTTGGAATAAAGAGACAGGTTTCTCTC TCCACACCTCCCTGTTGCTTCATTTCCTCCAGCCAACTCAGCCACCCACTCTGTCCTGTA AATTGGACTCTCAAGGTGAACAGTTTAAAGGGGTTAATGGTCTTGGATTTCCTCCCGCAG CGCAGTGGGTTAAAAATCCAACTAGAGTGACTCAGTCACTTTGGAGGTACGGGTTAGATC TGTGGCCCAGTGCAGTAGATTAAAGGATCTGGCATTGCCACAGCTGTGGCAGAGATCACA ACTGTGACTCGGATTCAATCCCTGGCTCAGGAACTTCCATATGCCACAGGTGCAGCCATG AAATTAAAAAATAAATTTTAAAAAAACGGGTTAATGGTCTCCCTCAAGTCCTTCCCTTTT AACTTGTGTGTTGATCCGTGCGGGTTATCTTCCTACCTTGCTTACCTTCCTTTGTCATTG CTGATGATTAAAGGGCATTTTCAGAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAGAGTTATTTGTATTTTGAAGAAAAAGACTTCGTGGATAAAGCAGAGAAGAGCCTAAA GCAGACTCCCCATAGCGAGATCATTTTTTATAAAAATGGTGTCAACCAAGGCGTGGCTTA CAAAGATATTTTCGAGGGGGTTTACTTTCCGGCCATCTCACTATACAAGAGCTGCACGGT CTCCATTAACTTTGGACCATGCTTCAAGTATCCGCCGAAGGATCTGGCTTACCGCCCCAT GAGTGACATGGGCTGGGGCGCCGTGGTCGAACACACTCTGGCTGATGTTTTGTATCACGT GGAGACAGAAGTGGATGGGAGGCGGAGTCCCCCCTGGGAACCCTGACCAAGCCCCCTTTT CTTTGCAGACACGGACTTTTCTGGGGAATAATATGAGGGGGTTTTGTTTTTGTTTTTCAC CTGTCGCAAATGTTTTCCCGAAGACACTGCAGAACACAGCCTCTGCTGTAGCAAGGTAAA GGCCAGGTGGCCCTGGGAGACTCCCTGCCCTGCAACACTCCCTTCAGTGACGGCCCTCAC TCTGCGCCACAGCCCAGCGGCTGCTGGCCTGCAATCCCTTCAGTGCCCTGCACACTGGGG CTGTACCACCTACTCCGCCAGCTGGGACTTGTTATCTTATGGCGTTGTCTAAGAAATGGG TGATCTTGTCCAAGCAGCTAACTTATTTAAAGGCATTTCCTTCTATGAGCATCACCTCCA TCCCACCAGATTCCCAAGGAGGTGGTGGGCCTGTTTCCCAGAACAGCTGAAATCAGTGGC TATATTCTAAACCTGTCTAAAAGCCTTTTCCTTTTGGTGTGGGTGTGTCTTTATTATTAA TTTCGAGATATGCTTTTGAACACTGGGATCTCTGAAGCTACTAGGTCTGTAGAACTGTAA TTGTGAAAGGAACTTGCTTGCAGCTTTAACAATTAGAAACTTTCCAAATAAAACTTGTCT TCGAGTGTGTGGGGCACTTTGCTTCCCTATCAGGTTGAGGTCTCTGTGGTGACAACTTCG GAAAGGTGGCCATTCTGAGGAAGGGGAGCTAGCCTTGGAATAAAGAGACAGGTTTCTCTC TCCACACCTCCCTGTTGCTTCATTTCCTCCAGCCAACTCAGCCACCCACTCTGTCCTGTA AATTGGACTCTCAAGGTGAACAGTTTAAAGGGGTTAATGGTCTTGGATTTCCTCCCGCAG CGCAGTGGGTTAAAAATCCAACTAGAGTGACTCAGTCACTTTGGAGGTACGGGTTAGATC TGTGGCCCAGTGCAGTAGATTAAAGGATCTGGCATTGCCACAGCTGTGGCAGAGATCACA ACTGTGACTCGGATTCAATCCCTGGCTCAGGAACTTCCATATGCCACAGGTGCAGCCATG AAATTAAAAAATAAATTTTAAAAAAACGGGTTAATGGTCTCCCTCAAGTCCTTCCCTTTT AACTTGTGTGTTGATCCGTGCGGGTTATCTTCCTACCTTGCTTACCTTCCTTTGTCATTG CTGATGATTAAAGGGCATTTTCAGAAAAAAAAAAAA |
| Aligned organism(s): 97 entry(ies) | More info |
| Aligned organism(s): 97 entry(ies) | Help | Less info |
| 78-180, gnl|bosTau2|chr27 (21189961-21190063) | |
| 78-180, gnl|canFam2|chr16 (30289633-30289535) | |
| 78-180, gnl|canFam2|chr16 (30289671-30289515) | |
| 78-180, gnl|canFam2|chr3 (24766918-24766855) | |
| 78-180, gnl|canFam2|chr3 (24766917-24766817) | |
| 78-180, gnl|danRer3|chrUn (27302260-27302159) | |
| 78-180, gnl|danRer3|chrUn (27302260-27302197) | |
| 78-180, gnl|danRer3|chrUn (27302260-27302160) | |
| 78-180, gnl|danRer3|chrUn (27302294-27302147) | |
| 78-180, gnl|dasNov1|scaffold_17278 (16650-16549) | |
| 78-180, gnl|dasNov1|scaffold_17278 (16648-16551) | |
| 78-180, gnl|dasNov1|scaffold_17278 (16634-16587) | |
| 78-180, gnl|dasNov1|scaffold_17278 (16648-16550) | |
| 78-180, gnl|dasNov1|scaffold_17278 (16689-16535) | |
| 78-180, gnl|dasNov1|scaffold_17278 (16650-16551) | |
| 78-180, gnl|echTel1|scaffold_321713 (11784-11686) | |
| 78-180, gnl|echTel1|scaffold_321713 (11784-11682) | |
| 78-180, gnl|echTel1|scaffold_321713 (11785-11721) | |
| 78-180, gnl|echTel1|scaffold_321713 (11784-11682) | |
| 78-180, gnl|echTel1|scaffold_321713 (11821-11668) | |
| 78-180, gnl|echTel1|scaffold_321713 (11784-11682) | |
| 78-180, gnl|fr1|chrUn (54253818-54253717) | |
| 78-180, gnl|fr1|chrUn (54253818-54253718) | |
| 78-180, gnl|fr1|chrUn (54253828-54253711) | |
| 78-180, gnl|galGal2|chrUn (451194-451294) | |
| 78-180, gnl|galGal2|chrUn (451184-451311) | |
| 78-180, gnl|hg17|chr22 (21019861-21019962) | |
| 78-180, gnl|hg17|chr22 (21099944-21100051) | |
| 78-180, gnl|hg17|chr22 (21046433-21046496) | |
| 78-180, gnl|hg17|chr22 (21126970-21127069) | |
| 78-180, gnl|hg17|chr5 (85734276-85734377) | |
| 78-180, gnl|hg17|chr8 (38112304-38112459) | |
| 78-180, gnl|Hg17|chr8 (38112341-38112443) | |
| 78-180, gnl|loxAfr1|scaffold_75330 (8733-8834) | |
| 78-180, gnl|loxAfr1|scaffold_75330 (8733-8841) | |
| 78-180, gnl|loxAfr1|scaffold_75330 (8732-8796) | |
| 78-180, gnl|loxAfr1|scaffold_75330 (8733-8833) | |
| 78-180, gnl|loxAfr1|scaffold_75330 (8694-8849) | |
| 78-180, gnl|loxAfr1|scaffold_75330 (8733-8835) | |
| 78-180, gnl|mm7|chr8 (24575134-24575038) | |
| 78-180, gnl|mm7|chr8 (24575134-24575034) | |
| 78-180, gnl|mm7|chr8 (24575137-24575073) | |
| 78-180, gnl|mm7|chr8 (24575134-24575034) | |
| 78-180, gnl|mm7|chr8 (24575176-24575018) | |
| 78-180, gnl|mm7|chr8 (24575136-24575034) | |
| 78-180, gnl|Mm7|chr8 (24575135-24575033) | |
| 78-180, gnl|monDom2|scaffold_1 (84783424-84783360) | |
| 78-180, gnl|monDom2|scaffold_1 (84783421-84783330) | |
| 78-180, gnl|monDom2|scaffold_1 (84783457-84783317) | |
| 78-180, gnl|monDom2|scaffold_1 (84783421-84783327) | |
| 78-180, gnl|oryCun1|scaffold_121880 (21508-21663) | |
| 78-180, gnl|oryCun1|scaffold_213923 (2544-2443) | |
| 78-180, gnl|oryCun1|scaffold_213923 (2544-2436) | |
| 78-180, gnl|oryCun1|scaffold_213923 (2545-2481) | |
| 78-180, gnl|oryCun1|scaffold_213923 (2544-2442) | |
| 78-180, gnl|oryCun1|scaffold_213923 (2544-2442) | |
| 78-180, gnl|panTro1|chr23 (21130618-21130719) | |
| 78-180, gnl|panTro1|chr23 (21130618-21130726) | |
| 78-180, gnl|panTro1|chr23 (21163775-21163838) | |
| 78-180, gnl|panTro1|chr23 (21163776-21163875) | |
| 78-180, gnl|panTro1|chr4 (29498014-29497913) | |
| 78-180, gnl|panTro1|chr7 (39506839-39506994) | |
| 78-180, gnl|rheMac2|chr10 (66250784-66250888) | |
| 78-180, gnl|rheMac2|chr10 (66367167-66367274) | |
| 78-180, gnl|rheMac2|chr10 (66271355-66271419) | |
| 78-180, gnl|rheMac2|chr10 (66394976-66395065) | |
| 78-180, gnl|rheMac2|chr6 (82631418-82631519) | |
| 78-180, gnl|rheMac2|chr8 (38590850-38591005) | |
| 78-180, gnl|rn3|chr16 (70637714-70637813) | |
| 78-180, gnl|rn3|chr16 (70637714-70637820) | |
| 78-180, gnl|rn3|chr16 (70637711-70637775) | |
| 78-180, gnl|rn3|chr16 (70637714-70637812) | |
| 78-180, gnl|rn3|chr16 (70637674-70637829) | |
| 78-180, gnl|rn3|chr16 (70637712-70637813) | |
| 78-180, gnl|tetNig1|chrUn_random (313534-313635) | |
| 78-180, gnl|tetNig1|chrUn_random (313534-313597) | |
| 78-180, gnl|tetNig1|chrUn_random (313534-313634) | |
| 78-180, gnl|tetNig1|chrUn_random (313524-313643) | |
| 78-180, gnl|tetNig1|chrUn_random (313534-313636) | |
| 78-180, gnl|xenTro1|scaffold_190 (804960-804859) | |
| 78-180, gnl|xenTro1|scaffold_190 (804961-804897) | |
| 78-180, gnl|xenTro1|scaffold_190 (804960-804858) | |
| 78-180, gnl|xenTro1|scaffold_190 (804964-804845) | |
| 239-1085, gnl|bosTau2|chr27 (21190906-21191745) | |
| 239-1085, gnl|Hg17|chr8 (38115639-38116522) | |
| 239-1085, gnl|Mm7|chr8 (24573997-24573251) | |
| 1408-1523, gnl|bosTau2|chr27 (21191811-21191927) | |
| 1408-1523, gnl|canFam2|chr16 (30287504-30287440) | |
| 1408-1523, gnl|dasNov1|scaffold_17278 (14730-14647) | |
| 1408-1523, gnl|hg17|chr8 (38116591-38116675) | |
| 1408-1523, gnl|Hg17|chr8 (38116590-38116707) | |
| 1408-1523, gnl|loxAfr1|scaffold_46036 (29457-29394) | |
| 1408-1523, gnl|mm7|chr8 (24573186-24573121) | |
| 1408-1523, gnl|oryCun1|scaffold_121880 (23740-23818) | |
| 1408-1523, gnl|panTro1|chr7 (39503946-39504030) | |
| 1408-1523, gnl|rheMac2|chr8 (38594481-38594563) | |
| 1408-1523, gnl|rn3|chr16 (70639641-70639699) |
| Aligned organism(s): 97 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 78-180, gnl|bosTau2|chr27 (21189961-21190063) | |
| 78-180, gnl|canFam2|chr16 (30289633-30289535) | |
| 78-180, gnl|canFam2|chr16 (30289671-30289515) | |
| 78-180, gnl|canFam2|chr3 (24766918-24766855) | |
| 78-180, gnl|canFam2|chr3 (24766917-24766817) | |
| 78-180, gnl|danRer3|chrUn (27302260-27302159) | |
| 78-180, gnl|danRer3|chrUn (27302260-27302197) | |
| 78-180, gnl|danRer3|chrUn (27302260-27302160) | |
| 78-180, gnl|danRer3|chrUn (27302294-27302147) | |
| 78-180, gnl|dasNov1|scaffold_17278 (16650-16549) | |
| 78-180, gnl|dasNov1|scaffold_17278 (16648-16551) | |
| 78-180, gnl|dasNov1|scaffold_17278 (16634-16587) | |
| 78-180, gnl|dasNov1|scaffold_17278 (16648-16550) | |
| 78-180, gnl|dasNov1|scaffold_17278 (16689-16535) | |
| 78-180, gnl|dasNov1|scaffold_17278 (16650-16551) | |
| 78-180, gnl|echTel1|scaffold_321713 (11784-11686) | |
| 78-180, gnl|echTel1|scaffold_321713 (11784-11682) | |
| 78-180, gnl|echTel1|scaffold_321713 (11785-11721) | |
| 78-180, gnl|echTel1|scaffold_321713 (11784-11682) | |
| 78-180, gnl|echTel1|scaffold_321713 (11821-11668) | |
| 78-180, gnl|echTel1|scaffold_321713 (11784-11682) | |
| 78-180, gnl|fr1|chrUn (54253818-54253717) | |
| 78-180, gnl|fr1|chrUn (54253818-54253718) | |
| 78-180, gnl|fr1|chrUn (54253828-54253711) | |
| 78-180, gnl|galGal2|chrUn (451194-451294) | |
| 78-180, gnl|galGal2|chrUn (451184-451311) | |
| 78-180, gnl|hg17|chr22 (21019861-21019962) | |
| 78-180, gnl|hg17|chr22 (21099944-21100051) | |
| 78-180, gnl|hg17|chr22 (21046433-21046496) | |
| 78-180, gnl|hg17|chr22 (21126970-21127069) | |
| 78-180, gnl|hg17|chr5 (85734276-85734377) | |
| 78-180, gnl|hg17|chr8 (38112304-38112459) | |
| 78-180, gnl|Hg17|chr8 (38112341-38112443) | |
| 78-180, gnl|loxAfr1|scaffold_75330 (8733-8834) | |
| 78-180, gnl|loxAfr1|scaffold_75330 (8733-8841) | |
| 78-180, gnl|loxAfr1|scaffold_75330 (8732-8796) | |
| 78-180, gnl|loxAfr1|scaffold_75330 (8733-8833) | |
| 78-180, gnl|loxAfr1|scaffold_75330 (8694-8849) | |
| 78-180, gnl|loxAfr1|scaffold_75330 (8733-8835) | |
| 78-180, gnl|mm7|chr8 (24575134-24575038) | |
| 78-180, gnl|mm7|chr8 (24575134-24575034) | |
| 78-180, gnl|mm7|chr8 (24575137-24575073) | |
| 78-180, gnl|mm7|chr8 (24575134-24575034) | |
| 78-180, gnl|mm7|chr8 (24575176-24575018) | |
| 78-180, gnl|mm7|chr8 (24575136-24575034) | |
| 78-180, gnl|Mm7|chr8 (24575135-24575033) | |
| 78-180, gnl|monDom2|scaffold_1 (84783424-84783360) | |
| 78-180, gnl|monDom2|scaffold_1 (84783421-84783330) | |
| 78-180, gnl|monDom2|scaffold_1 (84783457-84783317) | |
| 78-180, gnl|monDom2|scaffold_1 (84783421-84783327) | |
| 78-180, gnl|oryCun1|scaffold_121880 (21508-21663) | |
| 78-180, gnl|oryCun1|scaffold_213923 (2544-2443) | |
| 78-180, gnl|oryCun1|scaffold_213923 (2544-2436) | |
| 78-180, gnl|oryCun1|scaffold_213923 (2545-2481) | |
| 78-180, gnl|oryCun1|scaffold_213923 (2544-2442) | |
| 78-180, gnl|oryCun1|scaffold_213923 (2544-2442) | |
| 78-180, gnl|panTro1|chr23 (21130618-21130719) | |
| 78-180, gnl|panTro1|chr23 (21130618-21130726) | |
| 78-180, gnl|panTro1|chr23 (21163775-21163838) | |
| 78-180, gnl|panTro1|chr23 (21163776-21163875) | |
| 78-180, gnl|panTro1|chr4 (29498014-29497913) | |
| 78-180, gnl|panTro1|chr7 (39506839-39506994) | |
| 78-180, gnl|rheMac2|chr10 (66250784-66250888) | |
| 78-180, gnl|rheMac2|chr10 (66367167-66367274) | |
| 78-180, gnl|rheMac2|chr10 (66271355-66271419) | |
| 78-180, gnl|rheMac2|chr10 (66394976-66395065) | |
| 78-180, gnl|rheMac2|chr6 (82631418-82631519) | |
| 78-180, gnl|rheMac2|chr8 (38590850-38591005) | |
| 78-180, gnl|rn3|chr16 (70637714-70637813) | |
| 78-180, gnl|rn3|chr16 (70637714-70637820) | |
| 78-180, gnl|rn3|chr16 (70637711-70637775) | |
| 78-180, gnl|rn3|chr16 (70637714-70637812) | |
| 78-180, gnl|rn3|chr16 (70637674-70637829) | |
| 78-180, gnl|rn3|chr16 (70637712-70637813) | |
| 78-180, gnl|tetNig1|chrUn_random (313534-313635) | |
| 78-180, gnl|tetNig1|chrUn_random (313534-313597) | |
| 78-180, gnl|tetNig1|chrUn_random (313534-313634) | |
| 78-180, gnl|tetNig1|chrUn_random (313524-313643) | |
| 78-180, gnl|tetNig1|chrUn_random (313534-313636) | |
| 78-180, gnl|xenTro1|scaffold_190 (804960-804859) | |
| 78-180, gnl|xenTro1|scaffold_190 (804961-804897) | |
| 78-180, gnl|xenTro1|scaffold_190 (804960-804858) | |
| 78-180, gnl|xenTro1|scaffold_190 (804964-804845) | |
| 239-1085, gnl|bosTau2|chr27 (21190906-21191745) | |
| 239-1085, gnl|Hg17|chr8 (38115639-38116522) | |
| 239-1085, gnl|Mm7|chr8 (24573997-24573251) | |
| 1408-1523, gnl|bosTau2|chr27 (21191811-21191927) | |
| 1408-1523, gnl|canFam2|chr16 (30287504-30287440) | |
| 1408-1523, gnl|dasNov1|scaffold_17278 (14730-14647) | |
| 1408-1523, gnl|hg17|chr8 (38116591-38116675) | |
| 1408-1523, gnl|Hg17|chr8 (38116590-38116707) | |
| 1408-1523, gnl|loxAfr1|scaffold_46036 (29457-29394) | |
| 1408-1523, gnl|mm7|chr8 (24573186-24573121) | |
| 1408-1523, gnl|oryCun1|scaffold_121880 (23740-23818) | |
| 1408-1523, gnl|panTro1|chr7 (39503946-39504030) | |
| 1408-1523, gnl|rheMac2|chr8 (38594481-38594563) | |
| 1408-1523, gnl|rn3|chr16 (70639641-70639699) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| amn (0.417711) | |
| elu (0.385356) | |
| cmu (0.372787) | |
| tbr (0.308356) | |
| cte (0.29274) | |
| hea (0.204499) | |
| csp (0.161186) | |
| fat (0.147427) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| cty (0.10408) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| elu (0.385356) | |
| cmu (0.372787) | |
| tbr (0.308356) | |
| cte (0.29274) | |
| hea (0.204499) | |
| csp (0.161186) | |
| fat (0.147427) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| cty (0.10408) |