Non-Coding RNA Search

Ss1.1-Pig4-TMW8062L09.5

Sequence:


               
               ATGCTCCTCACCCAGAGTAGCAGGGAGACGTGGCACAAATGTCTATTTATGGAATGCCAC
GGGAAGAGAGCTGAAGCTGGTGTGGAGCATAAAGAGTCCAGAAACTCCAGGAGAGGAGTG
GGTTCTGCACAGAAGTGTTTGAGGATGGCTCCTCTGAAGCGTTATGTGTGCTTAAACTCA
GCCATGCAAAGCAGGCTTTCCGTGGCTTATTTCGCCTAGTGATTTTTAGTGAACTTTTTG
ATCTCTAACTCTCTTTACTTTTACTGTGGGCCTAAATTCCAGTTCTGCAGCAGACCAGGA
AATGCACTGTACTTATTTTTCCTCTAGGAGTCTACTCAATGAGGAAACCAAAACAGGATG
ATGTTTTTTAAAATTTTAATTTAAAAAACTAACTTTGAATGTGTGCATTCTGCGTAGGAC
TTCCAGTTGTTTCCCAGTGTTACCTGAGGTATGACTTTGCTGGCCAGGGACAAAATTAGA
ACCTTTCCATCCTCTGGTCCAAATGGACTTTGTGCTAAATAAAAAAATACTGCGCTGCAC
AGTAAAATTGTAGACAGCAGGAAAAATCAAGCACTATAGTGACAGAATAAAATTCAAAGA
TTATTTTTGCTAAGTAAATAATTCAAAGATCACAGGAAATCCCACCCTCCCTTATGAGAC
AATTGCCTGGCCCTCTCTCCCTGAAGCTCATTCAGTATCACCACCTTGGTTCCCTAAAGC
TGGTTTTTGGTTTTTGGGTTTTGGTTGGTTTTGTTTGTTTGTTTGTTTTGTTTTGTTTTG
TTTTGGTCTTTGCAGTGTATGGCACTTTTCTCCTATCTTTTTTTACCAGACTGTTCTGCT
TTCCAGTTTCAGACAAAAACTCTCTTCAGTTTTTTCTATTGTCCAATGCATCTCCTTAAC
AATAATATTATCATTTTAAATCTTATTTCTCATGGAAAAACAATACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGCTCCTCACCCAGAGTAGCAGGGAGACGTGGCACAAATGTCTATTTATGGAATGCCAC
GGGAAGAGAGCTGAAGCTGGTGTGGAGCATAAAGAGTCCAGAAACTCCAGGAGAGGAGTG
GGTTCTGCACAGAAGTGTTTGAGGATGGCTCCTCTGAAGCGTTATGTGTGCTTAAACTCA
GCCATGCAAAGCAGGCTTTCCGTGGCTTATTTCGCCTAGTGATTTTTAGTGAACTTTTTG
ATCTCTAACTCTCTTTACTTTTACTGTGGGCCTAAATTCCAGTTCTGCAGCAGACCAGGA
AATGCACTGTACTTATTTTTCCTCTAGGAGTCTACTCAATGAGGAAACCAAAACAGGATG
ATGTTTTTTAAAATTTTAATTTAAAAAACTAACTTTGAATGTGTGCATTCTGCGTAGGAC
TTCCAGTTGTTTCCCAGTGTTACCTGAGGTATGACTTTGCTGGCCAGGGACAAAATTAGA
ACCTTTCCATCCTCTGGTCCAAATGGACTTTGTGCTAAATAAAAAAATACTGCGCTGCAC
AGTAAAATTGTAGACAGCAGGAAAAATCAAGCACTATAGTGACAGAATAAAATTCAAAGA
TTATTTTTGCTAAGTAAATAATTCAAAGATCACAGGAAATCCCACCCTCCCTTATGAGAC
AATTGCCTGGCCCTCTCTCCCTGAAGCTCATTCAGTATCACCACCTTGGTTCCCTAAAGC
TGGTTTTTGGTTTTTGGGTTTTGGTTGGTTTTGTTTGTTTGTTTGTTTTGTTTTGTTTTG
TTTTGGTCTTTGCAGTGTATGGCACTTTTCTCCTATCTTTTTTTACCAGACTGTTCTGCT
TTCCAGTTTCAGACAAAAACTCTCTTCAGTTTTTTCTATTGTCCAATGCATCTCCTTAAC
AATAATATTATCATTTTAAATCTTATTTCTCATGGAAAAACAATACTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-761, gnl|bosTau2|chr20 (8622100-8621365)
               

               
               2-761, gnl|Hg17|chr5 (65155360-65156071)
               

               
               2-761, gnl|Mm7|chr13 (101161645-101161001)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-761, gnl|bosTau2|chr20 (8622100-8621365)
               

               
               2-761, gnl|Hg17|chr5 (65155360-65156071)
               

               
               2-761, gnl|Mm7|chr13 (101161645-101161001)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               lun (0.150489)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               lun (0.150489)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               eje (0.0988338)

	2-761, gnl\|bosTau2\|chr20 (8622100-8621365)
	2-761, gnl\|Hg17\|chr5 (65155360-65156071)
	2-761, gnl\|Mm7\|chr13 (101161645-101161001)

	ill (0.175593)
	rec (0.17307)
	lun (0.150489)
	lyg (0.133103)
	kid (0.129735)
	eje (0.0988338)