Ss1.1-Pig4-TMW8062L16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCCGCGGGCGCTACGAGGAGCTCTGCATTGTCATGTGTGTCATCCCTGCCACCATCAG CAACAACGTGCCAGGCACCGACTTCAGCCTGGGCTCCGACACCGCCGTCAACGCTGCCAT GGAGAGCTGTGACCGCATCAAGCAGTCGGCCTCGGGGACCAAGCGCCGCGTGTTCATCGT GGAGACCATGGGGGGCTACTGCGGCTACCTGGCCACCGTGACCGGCATCGCCGTGGGGGC CGACGCTGCCTACGTCTTCGAGGACCCTTTCAACATCCAGGACTTAAAGGCCAACGTGGA GCACATGACGGAGAAGATGAAGACCGACATCCAGAGGGGCCTGGTGCTCCGAAACGAGAA GTGCCACGAATACTACACCACGGAGTTTCTCTACAACCTGTACTCCTCCGAGGGGAGGGG CATCTTTGACTGCAGGACCAACGTCCTGGGCCACCTGCAGCAGGGCGGAGCTCCCACTCC CTTCGACCGGAACTACGGTACCAAGCTGGGGGTGAAGGCCATCCTCTGGATGTCCGAGAA GCTGCGGGCAGTCTACCGCAAGGGGCGGGTGTTTGCCAACGCCCCCGACTCGGCCTGCGT GATCGGCCTGCAGAAGAAGGCGGTGGCCTTCAGCCCGGTCACTGAGCTCAAGGAGGACAC CGACTTTGAGCACCGCATGCCCCGGGAGCAGTGGTGGCTGAACCTGCGGCTCATGCTGAA GATGCTGGCGCACTACCGCATCAGCATGGCCGACTACGTGTCCGGGGAGCTGGAGCACGT CACCCGCCGCACCCTGAGCATCGAAACCGGCTTCTGAAGCGTGTCCACGCCCCGCCCCTG CCTGCGCCTGCCTCCGCCCTCCTCCTCGGGCCTGTGGGCAGGTGGGCTTCGGGCAGGCAA GGCCTGGCGTTCTAGCCTGGCTTCGGTGTCTCATGGCCCCGTTCCATCCTGCGGCCCGCT CGGTCCTCTCCCAGGGCAGAGCACCCACGTTCCGGTCCAGGGGCACGTGGGGACATCCGT GTTTGAATACCACTGCCCAGCTGATCCCCACCCCATGGTGGCCCTGAGCCCCTTCCCAGC CCGCCCTGCACCCTCCCCAGCCCCGGGGGGCTGGCGGCTGGGTTTCCATGTGGGAAGGGG GGGGCATGCTCCTGTGGGTGGGTCTCGTGCTGTGACCCAGCTCCTGCGTGCCCTGGCCAC TGTGGACGCAGAGTTTGCCACGTTTTTTAGAAATAAAGTCACCCCAACTGTGGAGTGCTA AAAAAAAAGGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCCGCGGGCGCTACGAGGAGCTCTGCATTGTCATGTGTGTCATCCCTGCCACCATCAG CAACAACGTGCCAGGCACCGACTTCAGCCTGGGCTCCGACACCGCCGTCAACGCTGCCAT GGAGAGCTGTGACCGCATCAAGCAGTCGGCCTCGGGGACCAAGCGCCGCGTGTTCATCGT GGAGACCATGGGGGGCTACTGCGGCTACCTGGCCACCGTGACCGGCATCGCCGTGGGGGC CGACGCTGCCTACGTCTTCGAGGACCCTTTCAACATCCAGGACTTAAAGGCCAACGTGGA GCACATGACGGAGAAGATGAAGACCGACATCCAGAGGGGCCTGGTGCTCCGAAACGAGAA GTGCCACGAATACTACACCACGGAGTTTCTCTACAACCTGTACTCCTCCGAGGGGAGGGG CATCTTTGACTGCAGGACCAACGTCCTGGGCCACCTGCAGCAGGGCGGAGCTCCCACTCC CTTCGACCGGAACTACGGTACCAAGCTGGGGGTGAAGGCCATCCTCTGGATGTCCGAGAA GCTGCGGGCAGTCTACCGCAAGGGGCGGGTGTTTGCCAACGCCCCCGACTCGGCCTGCGT GATCGGCCTGCAGAAGAAGGCGGTGGCCTTCAGCCCGGTCACTGAGCTCAAGGAGGACAC CGACTTTGAGCACCGCATGCCCCGGGAGCAGTGGTGGCTGAACCTGCGGCTCATGCTGAA GATGCTGGCGCACTACCGCATCAGCATGGCCGACTACGTGTCCGGGGAGCTGGAGCACGT CACCCGCCGCACCCTGAGCATCGAAACCGGCTTCTGAAGCGTGTCCACGCCCCGCCCCTG CCTGCGCCTGCCTCCGCCCTCCTCCTCGGGCCTGTGGGCAGGTGGGCTTCGGGCAGGCAA GGCCTGGCGTTCTAGCCTGGCTTCGGTGTCTCATGGCCCCGTTCCATCCTGCGGCCCGCT CGGTCCTCTCCCAGGGCAGAGCACCCACGTTCCGGTCCAGGGGCACGTGGGGACATCCGT GTTTGAATACCACTGCCCAGCTGATCCCCACCCCATGGTGGCCCTGAGCCCCTTCCCAGC CCGCCCTGCACCCTCCCCAGCCCCGGGGGGCTGGCGGCTGGGTTTCCATGTGGGAAGGGG GGGGCATGCTCCTGTGGGTGGGTCTCGTGCTGTGACCCAGCTCCTGCGTGCCCTGGCCAC TGTGGACGCAGAGTTTGCCACGTTTTTTAGAAATAAAGTCACCCCAACTGTGGAGTGCTA AAAAAAAAGGGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 123-290, gnl|bosTau2|chr1 (93656706-93656873) | |
| 123-290, gnl|canFam2|chr31 (40512220-40512407) | |
| 123-290, gnl|danRer3|chrUn (75427146-75427328) | |
| 123-290, gnl|dasNov1|scaffold_13229 (77027-77216) | |
| 123-290, gnl|echTel1|scaffold_284847 (12722-12904) | |
| 123-290, gnl|fr1|chrUn (101303433-101303621) | |
| 123-290, gnl|galGal2|chrUn (134173876-134173694) | |
| 123-290, gnl|hg17|chr21 (44568787-44568975) | |
| 123-290, gnl|Hg17|chr21 (44568800-44568967) | |
| 123-290, gnl|loxAfr1|scaffold_39002 (14170-14339) | |
| 123-290, gnl|mm7|chr10 (77644929-77644739) | |
| 123-290, gnl|Mm7|chr10 (77644912-77644745) | |
| 123-290, gnl|monDom2|scaffold_189 (635174-635360) | |
| 123-290, gnl|oryCun1|scaffold_156853 (4404-4214) | |
| 123-290, gnl|panTro1|chr22 (44737582-44737770) | |
| 123-290, gnl|rheMac2|chr3 (2389088-2388900) | |
| 123-290, gnl|rn3|chr20 (11030125-11030314) | |
| 123-290, gnl|tetNig1|chr2 (12665624-12665441) | |
| 123-290, gnl|xenTro1|scaffold_995 (19381-19200) | |
| 353-464, gnl|bosTau2|chr1 (93657641-93657752) | |
| 353-464, gnl|canFam2|chr31 (40512931-40513048) | |
| 353-464, gnl|danRer3|chrUn (75427645-75427762) | |
| 353-464, gnl|dasNov1|scaffold_26965 (4914-4797) | |
| 353-464, gnl|echTel1|scaffold_284847 (14472-14587) | |
| 353-464, gnl|fr1|chrUn (101303872-101303989) | |
| 353-464, gnl|galGal2|chr9 (9220401-9220286) | |
| 353-464, gnl|hg17|chr21 (44569461-44569578) | |
| 353-464, gnl|Hg17|chr21 (44569465-44569576) | |
| 353-464, gnl|loxAfr1|scaffold_229595 (296-181) | |
| 353-464, gnl|mm7|chr10 (77644286-77644169) | |
| 353-464, gnl|Mm7|chr10 (77644280-77644169) | |
| 353-464, gnl|monDom2|scaffold_189 (635803-635920) | |
| 353-464, gnl|oryCun1|scaffold_156853 (3882-3765) | |
| 353-464, gnl|panTro1|chr22 (44738257-44738374) | |
| 353-464, gnl|rheMac2|chr3 (2388431-2388314) | |
| 353-464, gnl|rn3|chr20 (11030813-11030930) | |
| 353-464, gnl|tetNig1|chr2 (12665231-12665114) | |
| 353-464, gnl|xenTro1|scaffold_995 (15548-15431) | |
| 670-1107, gnl|bosTau2|chr1 (93659033-93659491) | |
| 670-1107, gnl|Hg17|chr21 (44571026-44571552) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 123-290, gnl|bosTau2|chr1 (93656706-93656873) | |
| 123-290, gnl|canFam2|chr31 (40512220-40512407) | |
| 123-290, gnl|danRer3|chrUn (75427146-75427328) | |
| 123-290, gnl|dasNov1|scaffold_13229 (77027-77216) | |
| 123-290, gnl|echTel1|scaffold_284847 (12722-12904) | |
| 123-290, gnl|fr1|chrUn (101303433-101303621) | |
| 123-290, gnl|galGal2|chrUn (134173876-134173694) | |
| 123-290, gnl|hg17|chr21 (44568787-44568975) | |
| 123-290, gnl|Hg17|chr21 (44568800-44568967) | |
| 123-290, gnl|loxAfr1|scaffold_39002 (14170-14339) | |
| 123-290, gnl|mm7|chr10 (77644929-77644739) | |
| 123-290, gnl|Mm7|chr10 (77644912-77644745) | |
| 123-290, gnl|monDom2|scaffold_189 (635174-635360) | |
| 123-290, gnl|oryCun1|scaffold_156853 (4404-4214) | |
| 123-290, gnl|panTro1|chr22 (44737582-44737770) | |
| 123-290, gnl|rheMac2|chr3 (2389088-2388900) | |
| 123-290, gnl|rn3|chr20 (11030125-11030314) | |
| 123-290, gnl|tetNig1|chr2 (12665624-12665441) | |
| 123-290, gnl|xenTro1|scaffold_995 (19381-19200) | |
| 353-464, gnl|bosTau2|chr1 (93657641-93657752) | |
| 353-464, gnl|canFam2|chr31 (40512931-40513048) | |
| 353-464, gnl|danRer3|chrUn (75427645-75427762) | |
| 353-464, gnl|dasNov1|scaffold_26965 (4914-4797) | |
| 353-464, gnl|echTel1|scaffold_284847 (14472-14587) | |
| 353-464, gnl|fr1|chrUn (101303872-101303989) | |
| 353-464, gnl|galGal2|chr9 (9220401-9220286) | |
| 353-464, gnl|hg17|chr21 (44569461-44569578) | |
| 353-464, gnl|Hg17|chr21 (44569465-44569576) | |
| 353-464, gnl|loxAfr1|scaffold_229595 (296-181) | |
| 353-464, gnl|mm7|chr10 (77644286-77644169) | |
| 353-464, gnl|Mm7|chr10 (77644280-77644169) | |
| 353-464, gnl|monDom2|scaffold_189 (635803-635920) | |
| 353-464, gnl|oryCun1|scaffold_156853 (3882-3765) | |
| 353-464, gnl|panTro1|chr22 (44738257-44738374) | |
| 353-464, gnl|rheMac2|chr3 (2388431-2388314) | |
| 353-464, gnl|rn3|chr20 (11030813-11030930) | |
| 353-464, gnl|tetNig1|chr2 (12665231-12665114) | |
| 353-464, gnl|xenTro1|scaffold_995 (15548-15431) | |
| 670-1107, gnl|bosTau2|chr1 (93659033-93659491) | |
| 670-1107, gnl|Hg17|chr21 (44571026-44571552) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| ebs (0.236602) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cov (0.132153) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.236602) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cov (0.132153) |