Non-Coding RNA Search

Ss1.1-Pig4-TMW8062L24.5

Sequence:


               
               AAGTATATGGTGAAGTAATGGCACCCCTTAAAAAACAGAAACTTAGTGAGAAATATAGTA
GGGGGAAGAATTTTGAAATAAAGAACGGTAGCTACTGGAAAAACTGAAAAAGTGTGGCTT
ATCCCAGGATGATGGCAGAGGCTACATTAAGACTGGGCCCAGACTCTGGTTTAGAACAAA
GGTAAATAAAACTAAATACGAGAACAGCCAGCTCAATCACTGGCTGGTGAACATACTTAG
ACAAATCTAACTAGAGGGAAACACCAGGAAAGAAAGTGAAGCTAAAAGAGAATGGAACAA
AAGAGAGCTCCTAACGGGATAAAGGAAGGAATTAAAGGTTAAAGTTGGATGGCCTGATGC
TCGGAGGAGAAACCCTGGAGGCCAGATAGGAAAGTGCCTTCCTACCCAGGGGGTCATGGA
TCCGGGGTGGCTGCAAGTGCAGGTCCACCTAGGGCCAGAGGGAACAACCTGGGATCCAGA
CCCAGCAATGGTGCCAACTTGAATCTACCTCGTGCTAGAGTGAGCAGCCTGGTCTGTCAT
CCATCACAGGTAAGACTGGGCAGGGGCTCCCAGAACCAACACCTAAAAAGGGAGCGGGGC
TAAGAGAAGACAGGTTAAGCCCCAAGTGTAACTGAATGATTACCAGGGATAACTATTTAC
TAGTACTTTTACCATTTCTTGTAACTCTGTAATTTTCCTAATATTTGTTGATTTCTATCT
GTTTTTTCCTGTATTAGTAGTAAAAATTTTTTCCTGTACTGGTCGTAAAAATTTTTTTCC
TGTACTAGTAATAAAATTGTTCAAAATGTAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGTATATGGTGAAGTAATGGCACCCCTTAAAAAACAGAAACTTAGTGAGAAATATAGTA
GGGGGAAGAATTTTGAAATAAAGAACGGTAGCTACTGGAAAAACTGAAAAAGTGTGGCTT
ATCCCAGGATGATGGCAGAGGCTACATTAAGACTGGGCCCAGACTCTGGTTTAGAACAAA
GGTAAATAAAACTAAATACGAGAACAGCCAGCTCAATCACTGGCTGGTGAACATACTTAG
ACAAATCTAACTAGAGGGAAACACCAGGAAAGAAAGTGAAGCTAAAAGAGAATGGAACAA
AAGAGAGCTCCTAACGGGATAAAGGAAGGAATTAAAGGTTAAAGTTGGATGGCCTGATGC
TCGGAGGAGAAACCCTGGAGGCCAGATAGGAAAGTGCCTTCCTACCCAGGGGGTCATGGA
TCCGGGGTGGCTGCAAGTGCAGGTCCACCTAGGGCCAGAGGGAACAACCTGGGATCCAGA
CCCAGCAATGGTGCCAACTTGAATCTACCTCGTGCTAGAGTGAGCAGCCTGGTCTGTCAT
CCATCACAGGTAAGACTGGGCAGGGGCTCCCAGAACCAACACCTAAAAAGGGAGCGGGGC
TAAGAGAAGACAGGTTAAGCCCCAAGTGTAACTGAATGATTACCAGGGATAACTATTTAC
TAGTACTTTTACCATTTCTTGTAACTCTGTAATTTTCCTAATATTTGTTGATTTCTATCT
GTTTTTTCCTGTATTAGTAGTAAAAATTTTTTCCTGTACTGGTCGTAAAAATTTTTTTCC
TGTACTAGTAATAAAATTGTTCAAAATGTAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               383-529, - strand, RNAz p=0.978328

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               383-529, - strand, RNAz p=0.978328

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               454-497, + strand, RNAmicro p=0.943647

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               454-497, + strand, RNAmicro p=0.943647

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               13-776, gnl|bosTau2|chr4 (50953620-50954395)
               

               
               13-776, gnl|Mm7|chr6 (30738251-30739005)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-776, gnl|bosTau2|chr4 (50953620-50954395)
               

               
               13-776, gnl|Mm7|chr6 (30738251-30739005)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               fhi (0.508733)
               

               
               amn (0.417711)
               

               
               fce (0.271592)
               

               
               eru (0.240096)
               

               
               cbe (0.239234)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.508733)
               

               
               amn (0.417711)
               

               
               fce (0.271592)
               

               
               eru (0.240096)
               

               
               cbe (0.239234)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	13-776, gnl\|bosTau2\|chr4 (50953620-50954395)
	13-776, gnl\|Mm7\|chr6 (30738251-30739005)

	fhi (0.508733)
	amn (0.417711)
	fce (0.271592)
	eru (0.240096)
	cbe (0.239234)
	fbs (0.175346)
	hyp (0.142837)
	pla (0.133672)
	ebs (0.118301)
	ecc (0.115035)