Non-Coding RNA Search

Ss1.1-Pig4-TMW8062M02.5

Sequence:


               
               AGAGCCTAGGCTTGGAGGAAGCAACAGCCTATCCCCCTGTTCAATTTCTCTAGCCAGCCG
TTATCTTTGAACTGCAGTGGGACAGCTGTGACAATAGAAGTGGGCTGGGGCTTTCTTTTT
GTTTTCCATTCACCTTTTGCCCTGCTGGGAATTAGGAGCCAGATACCAAGCCCCAGAACA
GTGTTATTTCTTCTTCTGCATGATGTATGGTGGACTCCCTTTGCCGACTTGTACGGTGAT
GCTGAAAAAATGAGTGAACAGAAGCTTCCCAAGTGGGACAGCACGTGACCTAGTGAGCAA
ACCTCACTTCTCCCCAGCAGCGGTGGTTCAGGATTCACCTGTTTCCCTAGGGCCTCAGAA
TGCCCTGGTCCCTGGGGTAGGGACTGACTGAGCACAAGGTAACATGTGCCAATGCTATTT
GTGAAATGTATGGTCTTTTTAAATGACTAATGGATTTCTTGGGTTTTTTTCCTGCTTACA
TTTTGAGCAAAATCCTAGAGCCAGCCCATATTCTAATAATCTGGAGGACAGAATAATGGT
ATATCACTAAATGGAGGTTCCTCCTTGTGTCGTGTACTAGATTATGGAAGATGTAAAATA
TTTGACTTTTCCCCCTTCCCTTTTTTTTTCTCTTTTGACTTTGTACTTTGCTGCATGTTT
CATTCATTTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGCCTAGGCTTGGAGGAAGCAACAGCCTATCCCCCTGTTCAATTTCTCTAGCCAGCCG
TTATCTTTGAACTGCAGTGGGACAGCTGTGACAATAGAAGTGGGCTGGGGCTTTCTTTTT
GTTTTCCATTCACCTTTTGCCCTGCTGGGAATTAGGAGCCAGATACCAAGCCCCAGAACA
GTGTTATTTCTTCTTCTGCATGATGTATGGTGGACTCCCTTTGCCGACTTGTACGGTGAT
GCTGAAAAAATGAGTGAACAGAAGCTTCCCAAGTGGGACAGCACGTGACCTAGTGAGCAA
ACCTCACTTCTCCCCAGCAGCGGTGGTTCAGGATTCACCTGTTTCCCTAGGGCCTCAGAA
TGCCCTGGTCCCTGGGGTAGGGACTGACTGAGCACAAGGTAACATGTGCCAATGCTATTT
GTGAAATGTATGGTCTTTTTAAATGACTAATGGATTTCTTGGGTTTTTTTCCTGCTTACA
TTTTGAGCAAAATCCTAGAGCCAGCCCATATTCTAATAATCTGGAGGACAGAATAATGGT
ATATCACTAAATGGAGGTTCCTCCTTGTGTCGTGTACTAGATTATGGAAGATGTAAAATA
TTTGACTTTTCCCCCTTCCCTTTTTTTTTCTCTTTTGACTTTGTACTTTGCTGCATGTTT
CATTCATTTTTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               313-462, - strand, RNAz p=0.95996

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               313-462, - strand, RNAz p=0.95996

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-672, gnl|bosTau2|chr22 (8613090-8612425)
               

               
               3-672, gnl|Hg17|chr3 (38271312-38271958)
               

               
               3-672, gnl|Mm7|chr9 (118919313-118918673)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-672, gnl|bosTau2|chr22 (8613090-8612425)
               

               
               3-672, gnl|Hg17|chr3 (38271312-38271958)
               

               
               3-672, gnl|Mm7|chr9 (118919313-118918673)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

	3-672, gnl\|bosTau2\|chr22 (8613090-8612425)
	3-672, gnl\|Hg17\|chr3 (38271312-38271958)
	3-672, gnl\|Mm7\|chr9 (118919313-118918673)

	ece (0.229305)
	fcc (0.197785)
	ill (0.175593)
	fbs (0.175346)
	ese (0.126502)
	tra (0.123092)
	spc (0.113366)