Ss1.1-Pig4-TMW8062M22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TATGGCAATGGTTTCAGCCCATCATTGAGCGAGTGGCTTTAAATTCCAAAGAACCTCATA TGTGTTTAGTAAGAGATATTTCAAACTGCTGGGCCCCAAAAGTAGAAACAGCCATAACAA AGGTGAGAACACCAGTGATGAATTCTGAAGCAAAAGTTCTGGTGCCTGGGATACCTGGTC ATCATGCAGCTATCAAGCCTGCTCCTCCACAGAGGGAGGATGTAGAGAACAAGAGAAAGT CGGGGAAAAGTGAGGTTAGCATTGAAGAGCGCCTGGGAGCACTGGACATAGACCCAAAAA AAGGAAAGGACAGCCTTCCACAGACAAATAGTTTTCCAGTTCTCCTCACACAGGGCTTAG AAAGTAATGATTTCGAAATGTTAAATAAAGTACTTCAGACCCGGAATTTAAACTTGATAA GGAGAACGGTATTAAGGATGCCCCTGCATGCTGTTATTCCGTTGTTGCAAGAGCTTACAA AGAGATTACAAGGACATCCTAATAGTGCTGTTTTAATGGTTCAGTGGCTAAAATGCGTGT TAACGGTTCATGCATCCTACTTATCCACATTGCCTGACCTGGTACCCCAGCTGGGGACGC TATACCAGTTAATGGAAAGCAGAGTAAAAACTTTCCAGAAACTCTCCCACCTTCATGGAA AGCTTATTCTTCTAGTCACACAAGTTACAGCGTCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TATGGCAATGGTTTCAGCCCATCATTGAGCGAGTGGCTTTAAATTCCAAAGAACCTCATA TGTGTTTAGTAAGAGATATTTCAAACTGCTGGGCCCCAAAAGTAGAAACAGCCATAACAA AGGTGAGAACACCAGTGATGAATTCTGAAGCAAAAGTTCTGGTGCCTGGGATACCTGGTC ATCATGCAGCTATCAAGCCTGCTCCTCCACAGAGGGAGGATGTAGAGAACAAGAGAAAGT CGGGGAAAAGTGAGGTTAGCATTGAAGAGCGCCTGGGAGCACTGGACATAGACCCAAAAA AAGGAAAGGACAGCCTTCCACAGACAAATAGTTTTCCAGTTCTCCTCACACAGGGCTTAG AAAGTAATGATTTCGAAATGTTAAATAAAGTACTTCAGACCCGGAATTTAAACTTGATAA GGAGAACGGTATTAAGGATGCCCCTGCATGCTGTTATTCCGTTGTTGCAAGAGCTTACAA AGAGATTACAAGGACATCCTAATAGTGCTGTTTTAATGGTTCAGTGGCTAAAATGCGTGT TAACGGTTCATGCATCCTACTTATCCACATTGCCTGACCTGGTACCCCAGCTGGGGACGC TATACCAGTTAATGGAAAGCAGAGTAAAAACTTTCCAGAAACTCTCCCACCTTCATGGAA AGCTTATTCTTCTAGTCACACAAGTTACAGCGTCAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 570-685, - strand, RNAz p=0.729656 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 570-685, - strand, RNAz p=0.729656 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 253-392, gnl|bosTau2|chr11 (50338857-50338997) | |
| 253-392, gnl|canFam2|chr17 (25898907-25899074) | |
| 253-392, gnl|echTel1|scaffold_244904 (4167-4335) | |
| 253-392, gnl|galGal2|chr3 (8570755-8570922) | |
| 253-392, gnl|hg17|chr2 (29064070-29064236) | |
| 253-392, gnl|Hg17|chr2 (29064094-29064234) | |
| 253-392, gnl|loxAfr1|scaffold_31871 (16970-17138) | |
| 253-392, gnl|mm7|chr17 (69924054-69924216) | |
| 253-392, gnl|Mm7|chr17 (69924077-69924214) | |
| 253-392, gnl|monDom2|scaffold_1 (146696708-146696539) | |
| 253-392, gnl|oryCun1|scaffold_183828 (8093-7929) | |
| 253-392, gnl|panTro1|chr12 (30023377-30023543) | |
| 253-392, gnl|rheMac2|chr13 (28926263-28926429) | |
| 253-392, gnl|rn3|chr6 (23968073-23967908) | |
| 570-685, gnl|bosTau2|chr11 (50346495-50346610) | |
| 570-685, gnl|canFam2|chr17 (25911237-25911401) | |
| 570-685, gnl|echTel1|scaffold_211312 (7499-7338) | |
| 570-685, gnl|galGal2|chr3 (8574043-8574210) | |
| 570-685, gnl|hg17|chr2 (29075935-29076098) | |
| 570-685, gnl|Hg17|chr2 (29075978-29076093) | |
| 570-685, gnl|mm7|chr17 (69934100-69934275) | |
| 570-685, gnl|Mm7|chr17 (69934155-69934270) | |
| 570-685, gnl|monDom2|scaffold_1 (146686606-146686448) | |
| 570-685, gnl|oryCun1|scaffold_97715 (3089-3251) | |
| 570-685, gnl|panTro1|chr12 (30035462-30035625) | |
| 570-685, gnl|rheMac2|chr13 (28939653-28939816) | |
| 570-685, gnl|rn3|chr6 (23960306-23960138) | |
| 570-685, gnl|tetNig1|chr10 (1489054-1488886) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 253-392, gnl|bosTau2|chr11 (50338857-50338997) | |
| 253-392, gnl|canFam2|chr17 (25898907-25899074) | |
| 253-392, gnl|echTel1|scaffold_244904 (4167-4335) | |
| 253-392, gnl|galGal2|chr3 (8570755-8570922) | |
| 253-392, gnl|hg17|chr2 (29064070-29064236) | |
| 253-392, gnl|Hg17|chr2 (29064094-29064234) | |
| 253-392, gnl|loxAfr1|scaffold_31871 (16970-17138) | |
| 253-392, gnl|mm7|chr17 (69924054-69924216) | |
| 253-392, gnl|Mm7|chr17 (69924077-69924214) | |
| 253-392, gnl|monDom2|scaffold_1 (146696708-146696539) | |
| 253-392, gnl|oryCun1|scaffold_183828 (8093-7929) | |
| 253-392, gnl|panTro1|chr12 (30023377-30023543) | |
| 253-392, gnl|rheMac2|chr13 (28926263-28926429) | |
| 253-392, gnl|rn3|chr6 (23968073-23967908) | |
| 570-685, gnl|bosTau2|chr11 (50346495-50346610) | |
| 570-685, gnl|canFam2|chr17 (25911237-25911401) | |
| 570-685, gnl|echTel1|scaffold_211312 (7499-7338) | |
| 570-685, gnl|galGal2|chr3 (8574043-8574210) | |
| 570-685, gnl|hg17|chr2 (29075935-29076098) | |
| 570-685, gnl|Hg17|chr2 (29075978-29076093) | |
| 570-685, gnl|mm7|chr17 (69934100-69934275) | |
| 570-685, gnl|Mm7|chr17 (69934155-69934270) | |
| 570-685, gnl|monDom2|scaffold_1 (146686606-146686448) | |
| 570-685, gnl|oryCun1|scaffold_97715 (3089-3251) | |
| 570-685, gnl|panTro1|chr12 (30035462-30035625) | |
| 570-685, gnl|rheMac2|chr13 (28939653-28939816) | |
| 570-685, gnl|rn3|chr6 (23960306-23960138) | |
| 570-685, gnl|tetNig1|chr10 (1489054-1488886) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (0.0989218) |