Non-Coding RNA Search

Ss1.1-Pig4-TMW8062O08.5

Sequence:


               
               AAAAGTATGCTCAATGTTTTTTTTTCCCTTTCCCCATTCCCTTGTAAATACATTTCGTTC
TATGTGACTTGGTTTGGAAATAGTTAACTGGTACTGTAATTTGCATTAAATAAAAAGTAG
GTTAGCCTGGAAATGAAATTAAAATTCACAAGTGTGTGGTCTTTATTTCAGTACCCAACC
TTTTCTTTGCCCTATTTTGTCACTGCAATATGTAGTCACATCACCACTTCTTTCCTCCAA
TTAGAAAAACATGGATCTTTGTTATAAAAGTCAAGATGTGAACACTAGCTCTCGTTCTTT
CAAATGATCTTCCACTGTATAGCCCCAAGAGGTGCAGCTTCCATCTTGGAAACCTTTGGA
TTTGATGTCAAGGAAGCTTTGCAGACACTGCTTTGAAAAGAATGAAAACATCCCTGAAAG
GGACAAATTTTTAAAATGTGTATAAGCTGCTGTCTTTGATTACTGTGTTCATGGTTTGGT
GTAGCTGTATTTTCTTTTAACCTCATCCCATTAGTAATGGTCTTTGGGAGTATCTGTGAA
TTATATGAACACCACAAACAGTGGGGCTGTACCTCCAGGTAACCAACATATGTTGTGTTT
GAGTCTGCTCATTTCCAATACTGGATGATGTATGTAAACATGTTATGTCTCTTAGTGCAA
AAAGAAACATCATTTTTTTAGGGCTGGCTCACTCTGTCAGACCTAATCTAAAGGCTAGAT
ATCAAGTCATGTGACTGCTGCTTCAATAAAAACAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGTATGCTCAATGTTTTTTTTTCCCTTTCCCCATTCCCTTGTAAATACATTTCGTTC
TATGTGACTTGGTTTGGAAATAGTTAACTGGTACTGTAATTTGCATTAAATAAAAAGTAG
GTTAGCCTGGAAATGAAATTAAAATTCACAAGTGTGTGGTCTTTATTTCAGTACCCAACC
TTTTCTTTGCCCTATTTTGTCACTGCAATATGTAGTCACATCACCACTTCTTTCCTCCAA
TTAGAAAAACATGGATCTTTGTTATAAAAGTCAAGATGTGAACACTAGCTCTCGTTCTTT
CAAATGATCTTCCACTGTATAGCCCCAAGAGGTGCAGCTTCCATCTTGGAAACCTTTGGA
TTTGATGTCAAGGAAGCTTTGCAGACACTGCTTTGAAAAGAATGAAAACATCCCTGAAAG
GGACAAATTTTTAAAATGTGTATAAGCTGCTGTCTTTGATTACTGTGTTCATGGTTTGGT
GTAGCTGTATTTTCTTTTAACCTCATCCCATTAGTAATGGTCTTTGGGAGTATCTGTGAA
TTATATGAACACCACAAACAGTGGGGCTGTACCTCCAGGTAACCAACATATGTTGTGTTT
GAGTCTGCTCATTTCCAATACTGGATGATGTATGTAAACATGTTATGTCTCTTAGTGCAA
AAAGAAACATCATTTTTTTAGGGCTGGCTCACTCTGTCAGACCTAATCTAAAGGCTAGAT
ATCAAGTCATGTGACTGCTGCTTCAATAAAAACAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               577-695, + strand, RNAz p=0.782676

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               577-695, + strand, RNAz p=0.782676

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-756, gnl|bosTau2|chr1 (30126368-30125600)
               

               
               1-756, gnl|Hg17|chr3 (121023632-121022869)
               

               
               1-756, gnl|Mm7|chr16 (37952130-37952870)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-756, gnl|bosTau2|chr1 (30126368-30125600)
               

               
               1-756, gnl|Hg17|chr3 (121023632-121022869)
               

               
               1-756, gnl|Mm7|chr16 (37952130-37952870)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ret (0.257467)
               

               
               fco (0.157208)
               

               
               ssp (0.13552)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.257467)
               

               
               fco (0.157208)
               

               
               ssp (0.13552)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

	1-756, gnl\|bosTau2\|chr1 (30126368-30125600)
	1-756, gnl\|Hg17\|chr3 (121023632-121022869)
	1-756, gnl\|Mm7\|chr16 (37952130-37952870)

	ret (0.257467)
	fco (0.157208)
	ssp (0.13552)
	thg (0.126791)
	tra (0.123092)
	med (0.116252)
	ldo (0.0970026)