Ss1.1-Pig4-TMW8062O22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGCTCATGGTTAATGAGTCACCCCTGTCCGTGGAGTGGAGGACCCCAGACGGCAGGAAC CGGCCTAGCCATGTCTGGCTCTGTGACCTGCCTGCCGCCTCCCTCAACGACCATTTGCCG CAACATACGTTTCGTGTCATTTGGACAGCAGGCGATGCCCAGAAGGAGTGTGTGCTCTTA AAAGGCCGCCAAGAGGGCTGGTGCCGAGACTCAGCCACAGATGAACAGCTCTTCAGGTGT GAGCTGTCAGTGGAGAAGTCCACGGTGCTGCAGTCTGAGCTGGAATCCTGTAAGGAGCTG CAGGAGCTGGAGCCTGAGAATAAATGGTGCCTGCTCACCATCATCTTGCTGATGCGGGCG CTGGACCCCCTGCTGTATGAGAAGGAGACGCTGCAGTACTTCCAGACCCTCAAGGCAGTG GACCCGATGCGGGCCGCGTACCTGGATGACCTGCGCAGCAAGTTCCTGCTGGAGAACAGC GTGCTCAAGATGGAGTACGCGGACGTGCGCGTGCTGCATCTGGGTCACAAGGATCTGACG GTGCTCTGCCATCTGGAACAGCTGCTTTTGGTCACTCACCTTGACCTGTCACACAATCGT CTCCGAGCGCTACCGCCAGCCCTGGCTGCCCTGCGCTGCCTCGAGGTGCTGCAGGCCAAT GATAATGCTATCGAGTCCCTGGACGGTGTCACTAACCTGCCCCGGCTGCAGGAGCTCTCC CTGTGCAACAACCGCCTCCAGCAGCCTGCAGTGCTCCAGCCTCTTGCCTCCTGCCCCAGG CTGGTCCTCCTCAACCTGCAGGACAACCCCCTGTGCCAAGCAGTGGGCATCTCAGAGCAC CTGGCTGAGCTGCTCCCTTCAGTTAGCAGCATCCTCACCTAAAGGACCCTGCCCCCACCC TTGCCCCTTTAACTTATTGGAACTGAATAAACAATGAAGAGGCCCCCAAAGGCCACTGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGCTCATGGTTAATGAGTCACCCCTGTCCGTGGAGTGGAGGACCCCAGACGGCAGGAAC CGGCCTAGCCATGTCTGGCTCTGTGACCTGCCTGCCGCCTCCCTCAACGACCATTTGCCG CAACATACGTTTCGTGTCATTTGGACAGCAGGCGATGCCCAGAAGGAGTGTGTGCTCTTA AAAGGCCGCCAAGAGGGCTGGTGCCGAGACTCAGCCACAGATGAACAGCTCTTCAGGTGT GAGCTGTCAGTGGAGAAGTCCACGGTGCTGCAGTCTGAGCTGGAATCCTGTAAGGAGCTG CAGGAGCTGGAGCCTGAGAATAAATGGTGCCTGCTCACCATCATCTTGCTGATGCGGGCG CTGGACCCCCTGCTGTATGAGAAGGAGACGCTGCAGTACTTCCAGACCCTCAAGGCAGTG GACCCGATGCGGGCCGCGTACCTGGATGACCTGCGCAGCAAGTTCCTGCTGGAGAACAGC GTGCTCAAGATGGAGTACGCGGACGTGCGCGTGCTGCATCTGGGTCACAAGGATCTGACG GTGCTCTGCCATCTGGAACAGCTGCTTTTGGTCACTCACCTTGACCTGTCACACAATCGT CTCCGAGCGCTACCGCCAGCCCTGGCTGCCCTGCGCTGCCTCGAGGTGCTGCAGGCCAAT GATAATGCTATCGAGTCCCTGGACGGTGTCACTAACCTGCCCCGGCTGCAGGAGCTCTCC CTGTGCAACAACCGCCTCCAGCAGCCTGCAGTGCTCCAGCCTCTTGCCTCCTGCCCCAGG CTGGTCCTCCTCAACCTGCAGGACAACCCCCTGTGCCAAGCAGTGGGCATCTCAGAGCAC CTGGCTGAGCTGCTCCCTTCAGTTAGCAGCATCCTCACCTAAAGGACCCTGCCCCCACCC TTGCCCCTTTAACTTATTGGAACTGAATAAACAATGAAGAGGCCCCCAAAGGCCACTGAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 734-852, - strand, RNAz p=0.636321 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 734-852, - strand, RNAz p=0.636321 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 78-185, gnl|bosTau2|chr10 (12227181-12227288) | |
| 78-185, gnl|canFam2|chr8 (7253518-7253685) | |
| 78-185, gnl|danRer3|chr25 (10432245-10432374) | |
| 78-185, gnl|dasNov1|scaffold_21827 (46240-46065) | |
| 78-185, gnl|echTel1|scaffold_316077 (133581-133753) | |
| 78-185, gnl|fr1|chrUn (154311764-154311905) | |
| 78-185, gnl|hg17|chr14 (23807538-23807712) | |
| 78-185, gnl|Hg17|chr14 (23807666-23807559) | |
| 78-185, gnl|mm7|chr14 (50586571-50586742) | |
| 78-185, gnl|Mm7|chr14 (50586699-50586592) | |
| 78-185, gnl|monDom2|scaffold_12 (25457026-25456854) | |
| 78-185, gnl|oryCun1|scaffold_178102 (151912-152089) | |
| 78-185, gnl|panTro1|chr15 (22710376-22710550) | |
| 78-185, gnl|rheMac2|chr7 (87163741-87163915) | |
| 78-185, gnl|rn3|chr15 (33881306-33881478) | |
| 78-185, gnl|xenTro1|scaffold_53 (814648-814764) | |
| 407-532, gnl|bosTau2|chr10 (12227939-12228065) | |
| 407-532, gnl|canFam2|chr8 (7252666-7252761) | |
| 407-532, gnl|danRer3|chr25 (10426970-10427057) | |
| 407-532, gnl|fr1|chrUn (154311022-154311116) | |
| 407-532, gnl|hg17|chr14 (23806697-23806792) | |
| 407-532, gnl|Hg17|chr14 (23806831-23806705) | |
| 407-532, gnl|loxAfr1|scaffold_117410 (99-4) | |
| 407-532, gnl|mm7|chr14 (50585789-50585885) | |
| 407-532, gnl|Mm7|chr14 (50585924-50585798) | |
| 407-532, gnl|monDom2|scaffold_12 (25458228-25458139) | |
| 407-532, gnl|panTro1|chr15 (22709535-22709630) | |
| 407-532, gnl|rheMac2|chr7 (87162900-87162995) | |
| 407-532, gnl|rn3|chr15 (33880365-33880461) | |
| 407-532, gnl|tetNig1|chr1_random (2271032-2271119) | |
| 734-946, gnl|bosTau2|chr10 (12230485-12230696) | |
| 734-946, gnl|Hg17|chr14 (23804809-23804597) | |
| 734-946, gnl|Mm7|chr14 (50583891-50583681) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 78-185, gnl|bosTau2|chr10 (12227181-12227288) | |
| 78-185, gnl|canFam2|chr8 (7253518-7253685) | |
| 78-185, gnl|danRer3|chr25 (10432245-10432374) | |
| 78-185, gnl|dasNov1|scaffold_21827 (46240-46065) | |
| 78-185, gnl|echTel1|scaffold_316077 (133581-133753) | |
| 78-185, gnl|fr1|chrUn (154311764-154311905) | |
| 78-185, gnl|hg17|chr14 (23807538-23807712) | |
| 78-185, gnl|Hg17|chr14 (23807666-23807559) | |
| 78-185, gnl|mm7|chr14 (50586571-50586742) | |
| 78-185, gnl|Mm7|chr14 (50586699-50586592) | |
| 78-185, gnl|monDom2|scaffold_12 (25457026-25456854) | |
| 78-185, gnl|oryCun1|scaffold_178102 (151912-152089) | |
| 78-185, gnl|panTro1|chr15 (22710376-22710550) | |
| 78-185, gnl|rheMac2|chr7 (87163741-87163915) | |
| 78-185, gnl|rn3|chr15 (33881306-33881478) | |
| 78-185, gnl|xenTro1|scaffold_53 (814648-814764) | |
| 407-532, gnl|bosTau2|chr10 (12227939-12228065) | |
| 407-532, gnl|canFam2|chr8 (7252666-7252761) | |
| 407-532, gnl|danRer3|chr25 (10426970-10427057) | |
| 407-532, gnl|fr1|chrUn (154311022-154311116) | |
| 407-532, gnl|hg17|chr14 (23806697-23806792) | |
| 407-532, gnl|Hg17|chr14 (23806831-23806705) | |
| 407-532, gnl|loxAfr1|scaffold_117410 (99-4) | |
| 407-532, gnl|mm7|chr14 (50585789-50585885) | |
| 407-532, gnl|Mm7|chr14 (50585924-50585798) | |
| 407-532, gnl|monDom2|scaffold_12 (25458228-25458139) | |
| 407-532, gnl|panTro1|chr15 (22709535-22709630) | |
| 407-532, gnl|rheMac2|chr7 (87162900-87162995) | |
| 407-532, gnl|rn3|chr15 (33880365-33880461) | |
| 407-532, gnl|tetNig1|chr1_random (2271032-2271119) | |
| 734-946, gnl|bosTau2|chr10 (12230485-12230696) | |
| 734-946, gnl|Hg17|chr14 (23804809-23804597) | |
| 734-946, gnl|Mm7|chr14 (50583891-50583681) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| hyp (0.285673) | |
| tes (0.207814) | |
| col (0.195008) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| cov (0.132153) | |
| cly (0.120642) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.285673) | |
| tes (0.207814) | |
| col (0.195008) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| cov (0.132153) | |
| cly (0.120642) |