Non-Coding RNA Search

Ss1.1-Pig4-TMW8062P13.3

Sequence:


               
               GTGTGCAGGGGGCTCGTGAGTCCGGGGGTCGGGGATGGGGCGAGTAGAACCTTCGTTCAG
GTAGCAAAGGATTCGGTTTCTTAGCAGATCAGGGTGTGAGACTGATGTGCTTTCTTGCTT
CTCACTCACAAAGCCTGGTCTGTCTTTTACTGACCCTCCTTTTCTCAGCTTTTCATGGGA
AAAGCGGTTCTTTGCGAGTCTGTCCGGTTGTAGCTTTGGGTCCGTCTCCGTGGTGTGGCC
TGGTGGTGTGTGGCCGAGCCGTGTCGTCACTGCGTGGCGGCCGGGGTCCTGGTGTGCACT
CAGGCCTCCGCCCGGAGAGCCGTGTGCACAGACGGCGTGTGGCCCTGAGGCCTGGGGTCT
CGGGTGGCTGGGGTGGCCTCCCTGATCTGAGGTGCCCGGTGGCCGCCTGCACGCCAGTGC
TGGGGCCTCCGGGACCGCAGGCCCCTCTGGAGCACAGCCGTGCGTTCCCTTCACAAAGAG
CAGCTCCCCGTGGGCGCCTGGGGCCCGTTTCCGGAGAGCCCAGCGGGGTTAGGTGGGCAG
CTCAGCCGCCTCCTGTCACTGCCTCCCGCTTCCGAATCTTAAGGGCCTGAAGTCGGTCCT
GTCTGTCTCTCTCTCTCTCTTTCTCTCTCTCTGTGTCTCAGATGGCGATTTTGCTGACAG
CTGCCAAGAAAACGCTCCACCCCGACAGCCCACCTCAGCCCAGGGAAGTTTGTAGAACTT
TGTGAATGGCAGCCACCCCTCCCCCAATCTGAAGAGCGGTTCTTTTTAAGTTGACCCAGA
AGTGGCTCTGTTTTGTCCCCAAAGAGTTGAATCCGCCTCTAAGAGTTCAAAGCACACCCC
GCAGAGCTGCTCACGGGGCTCACTCTCCGGTCACATGCACCCCGTCCTCCTGGGCGGGGC
CGGGGCAGAGGGACCTCCGCTCGCACTGGACCGGGTCCCCTCCGTGCCCTGCACTCTTTC
GAAATGCTGCTGGACGTCCCCTTCGCCAGCACTAATGATTCTCTCGGTTCCCCGTCTATG
ACCAGTGTCTTAAATCACTTTCTTTCCTAACGTCATGATTTACGTATCAAATTCTGTAAA
TGTTTTGTAAACATATTACCTCACTCTTGGTAATACAATACTGATAGTCTTTAAAAGATT
TTTTTATTGTTATCAATAATAAATGTGAACTGTTTAAAAAAAAAAAAAAAAAAAGCTACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTGCAGGGGGCTCGTGAGTCCGGGGGTCGGGGATGGGGCGAGTAGAACCTTCGTTCAG
GTAGCAAAGGATTCGGTTTCTTAGCAGATCAGGGTGTGAGACTGATGTGCTTTCTTGCTT
CTCACTCACAAAGCCTGGTCTGTCTTTTACTGACCCTCCTTTTCTCAGCTTTTCATGGGA
AAAGCGGTTCTTTGCGAGTCTGTCCGGTTGTAGCTTTGGGTCCGTCTCCGTGGTGTGGCC
TGGTGGTGTGTGGCCGAGCCGTGTCGTCACTGCGTGGCGGCCGGGGTCCTGGTGTGCACT
CAGGCCTCCGCCCGGAGAGCCGTGTGCACAGACGGCGTGTGGCCCTGAGGCCTGGGGTCT
CGGGTGGCTGGGGTGGCCTCCCTGATCTGAGGTGCCCGGTGGCCGCCTGCACGCCAGTGC
TGGGGCCTCCGGGACCGCAGGCCCCTCTGGAGCACAGCCGTGCGTTCCCTTCACAAAGAG
CAGCTCCCCGTGGGCGCCTGGGGCCCGTTTCCGGAGAGCCCAGCGGGGTTAGGTGGGCAG
CTCAGCCGCCTCCTGTCACTGCCTCCCGCTTCCGAATCTTAAGGGCCTGAAGTCGGTCCT
GTCTGTCTCTCTCTCTCTCTTTCTCTCTCTCTGTGTCTCAGATGGCGATTTTGCTGACAG
CTGCCAAGAAAACGCTCCACCCCGACAGCCCACCTCAGCCCAGGGAAGTTTGTAGAACTT
TGTGAATGGCAGCCACCCCTCCCCCAATCTGAAGAGCGGTTCTTTTTAAGTTGACCCAGA
AGTGGCTCTGTTTTGTCCCCAAAGAGTTGAATCCGCCTCTAAGAGTTCAAAGCACACCCC
GCAGAGCTGCTCACGGGGCTCACTCTCCGGTCACATGCACCCCGTCCTCCTGGGCGGGGC
CGGGGCAGAGGGACCTCCGCTCGCACTGGACCGGGTCCCCTCCGTGCCCTGCACTCTTTC
GAAATGCTGCTGGACGTCCCCTTCGCCAGCACTAATGATTCTCTCGGTTCCCCGTCTATG
ACCAGTGTCTTAAATCACTTTCTTTCCTAACGTCATGATTTACGTATCAAATTCTGTAAA
TGTTTTGTAAACATATTACCTCACTCTTGGTAATACAATACTGATAGTCTTTAAAAGATT
TTTTTATTGTTATCAATAATAAATGTGAACTGTTTAAAAAAAAAAAAAAAAAAAGCTACT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               481-1183, gnl|bosTau2|chr19 (48664324-48663634)
               

               
               481-1183, gnl|Hg17|chr17 (72723347-72724778)
               

               
               481-1183, gnl|Mm7|chr11 (117267624-117268316)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               481-1183, gnl|bosTau2|chr19 (48664324-48663634)
               

               
               481-1183, gnl|Hg17|chr17 (72723347-72724778)
               

               
               481-1183, gnl|Mm7|chr11 (117267624-117268316)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

Help | Less info


               
               pla (0.534688)
               

               
               amn (0.417711)
               

               
               nlu (0.383362)
               

               
               fce (0.271592)
               

               
               cov (0.264306)
               

               
               cly (0.241284)
               

               
               eru (0.240096)
               

               
               clu (0.239292)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               col (0.195008)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.534688)
               

               
               amn (0.417711)
               

               
               nlu (0.383362)
               

               
               fce (0.271592)
               

               
               cov (0.264306)
               

               
               cly (0.241284)
               

               
               eru (0.240096)
               

               
               clu (0.239292)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               col (0.195008)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)

	481-1183, gnl\|bosTau2\|chr19 (48664324-48663634)
	481-1183, gnl\|Hg17\|chr17 (72723347-72724778)
	481-1183, gnl\|Mm7\|chr11 (117267624-117268316)

	pla (0.534688)
	amn (0.417711)
	nlu (0.383362)
	fce (0.271592)
	cov (0.264306)
	cly (0.241284)
	eru (0.240096)
	clu (0.239292)
	jca (0.22792)
	nms (0.213858)
	col (0.195008)
	cje (0.165235)
	cag (0.151194)
	pty (0.142714)
	cst (0.140036)
	eep (0.122564)
	ecc (0.115035)