Ss1.1-Pig4-TMW8062P16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGCCGCGAGGCCGGAACTTTCGCGGGCCTAGGCTCCCGGGAGCCGAGCAAGAGCGGGAC AGCAGGCGTGCGCGGAGGGAGTCTTCCGTTCAGGTCGCTAACTCTGTGACAGCGCGCTCT AGGAGCGGAGCAAGGCTTGTGTAGGTTCTCACGACCGCATTTGGTCCCCGAGCATTCTTC CCAGGTGCGCGTTTCCGGCGTCCTGGCTACCGCGGCTGTAGCCGGCCGGGCCGTGGCCTG GCTCTTCCTCTGGGAGGTGGCTGGGCTCACCTCTGCAGACCCAGTCTTCAGCACGGCCCC CACCGACGCTGGCATAAGAGCCACTTGTTCTGAAATTATTTTGAAGCAAGAAGTTTTGAA AGATGGTTTCCACAGAGACCTGTTAATAAGAGTGAAATTTGGAGAAGGCATTGAGGACTT ACAGACCTGCCGAGTCTTAATTAGACAATACATCCCGACAGGACTTTTTGTGGATCCATA TGAGTTGGCTTCATTACGAGAGAAAAACATAACAGAGGCAGTGATGGTTTCAGAAAATTT TAATATAGAGGCTCCTGACTATTTGTCCAAGGAATCTGAAGTTCTCATTTATGCCAGACA GGATCCTCAGTGCACTGATTGTTTCCAAGCTTTTTTGCCTGTGCACTATCGCTATCATCG GCCACATTGTAATGATGAAGAAACCTTCATTGTGGTCAATAACCCTGATTTATTGATGTA TTGTGACCAAGAGTTTCCAGTTTTGAAATGCTGGACTCAGTCAGAAATGACAGCTCCTTG TGCTTTGAACAGTCAGGATATCTGCCAATGGAACAATATGAAATATAAGTCAGTATATAA GAATGTGACTCTACTGGTTCCAGTGGGACTGACCATACATACCTCTTTAGTATGTTCTGT GACACTGCTCGTTACCGTCTTGTGTTCTGCTTTGATCCTTGTGGCTGTTTTCACATATGG CCATTTTTCCCTATAAGTTTTATGTGGTTAAATGCTTTCAATAAACCTAAATAAGACCTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGCCGCGAGGCCGGAACTTTCGCGGGCCTAGGCTCCCGGGAGCCGAGCAAGAGCGGGAC AGCAGGCGTGCGCGGAGGGAGTCTTCCGTTCAGGTCGCTAACTCTGTGACAGCGCGCTCT AGGAGCGGAGCAAGGCTTGTGTAGGTTCTCACGACCGCATTTGGTCCCCGAGCATTCTTC CCAGGTGCGCGTTTCCGGCGTCCTGGCTACCGCGGCTGTAGCCGGCCGGGCCGTGGCCTG GCTCTTCCTCTGGGAGGTGGCTGGGCTCACCTCTGCAGACCCAGTCTTCAGCACGGCCCC CACCGACGCTGGCATAAGAGCCACTTGTTCTGAAATTATTTTGAAGCAAGAAGTTTTGAA AGATGGTTTCCACAGAGACCTGTTAATAAGAGTGAAATTTGGAGAAGGCATTGAGGACTT ACAGACCTGCCGAGTCTTAATTAGACAATACATCCCGACAGGACTTTTTGTGGATCCATA TGAGTTGGCTTCATTACGAGAGAAAAACATAACAGAGGCAGTGATGGTTTCAGAAAATTT TAATATAGAGGCTCCTGACTATTTGTCCAAGGAATCTGAAGTTCTCATTTATGCCAGACA GGATCCTCAGTGCACTGATTGTTTCCAAGCTTTTTTGCCTGTGCACTATCGCTATCATCG GCCACATTGTAATGATGAAGAAACCTTCATTGTGGTCAATAACCCTGATTTATTGATGTA TTGTGACCAAGAGTTTCCAGTTTTGAAATGCTGGACTCAGTCAGAAATGACAGCTCCTTG TGCTTTGAACAGTCAGGATATCTGCCAATGGAACAATATGAAATATAAGTCAGTATATAA GAATGTGACTCTACTGGTTCCAGTGGGACTGACCATACATACCTCTTTAGTATGTTCTGT GACACTGCTCGTTACCGTCTTGTGTTCTGCTTTGATCCTTGTGGCTGTTTTCACATATGG CCATTTTTCCCTATAAGTTTTATGTGGTTAAATGCTTTCAATAAACCTAAATAAGACCTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 193-312, - strand, RNAz p=0.705931 | |
| 595-714, - strand, RNAz p=0.805684 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 193-312, - strand, RNAz p=0.705931 | |
| 595-714, - strand, RNAz p=0.805684 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 39-312, gnl|bosTau2|chr1 (43390884-43391161) | |
| 39-312, gnl|Hg17|chr3 (197927547-197927826) | |
| 39-312, gnl|Mm7|chr16 (31774233-31774000) | |
| 516-731, gnl|bosTau2|chr1 (43410807-43411022) | |
| 516-731, gnl|canFam2|chr33 (32801390-32801680) | |
| 516-731, gnl|dasNov1|scaffold_202087 (348-57) | |
| 516-731, gnl|echTel1|scaffold_291573 (70282-69989) | |
| 516-731, gnl|galGal2|chr9 (8928718-8928985) | |
| 516-731, gnl|hg17|chr3 (197943082-197943379) | |
| 516-731, gnl|Hg17|chr3 (197943102-197943317) | |
| 516-731, gnl|loxAfr1|scaffold_12045 (20261-19967) | |
| 516-731, gnl|mm7|chr16 (31762055-31761804) | |
| 516-731, gnl|Mm7|chr16 (31762034-31761819) | |
| 516-731, gnl|monDom2|scaffold_24 (26543946-26544226) | |
| 516-731, gnl|oryCun1|scaffold_214084 (284311-284606) | |
| 516-731, gnl|panTro1|chr2 (202125116-202125413) | |
| 516-731, gnl|rheMac2|chr2 (188703341-188703044) | |
| 516-731, gnl|rn3|chr11 (70578329-70578598) | |
| 833-1017, gnl|bosTau2|chr1 (43414078-43414262) | |
| 833-1017, gnl|canFam2|chr33 (32806340-32806690) | |
| 833-1017, gnl|dasNov1|scaffold_15271 (4022-4310) | |
| 833-1017, gnl|echTel1|scaffold_291573 (49351-49016) | |
| 833-1017, gnl|hg17|chr3 (197948925-197949227) | |
| 833-1017, gnl|Hg17|chr3 (197948940-197949124) | |
| 833-1017, gnl|loxAfr1|scaffold_12045 (10583-10274) | |
| 833-1017, gnl|mm7|chr16 (31759168-31758794) | |
| 833-1017, gnl|Mm7|chr16 (31759151-31758959) | |
| 833-1017, gnl|monDom2|scaffold_24 (26549840-26550163) | |
| 833-1017, gnl|oryCun1|scaffold_85673 (2512-2208) | |
| 833-1017, gnl|panTro1|chr2 (202131810-202132112) | |
| 833-1017, gnl|rheMac2|chr2 (188696847-188696540) | |
| 833-1017, gnl|rn3|chr11 (70582336-70582719) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 39-312, gnl|bosTau2|chr1 (43390884-43391161) | |
| 39-312, gnl|Hg17|chr3 (197927547-197927826) | |
| 39-312, gnl|Mm7|chr16 (31774233-31774000) | |
| 516-731, gnl|bosTau2|chr1 (43410807-43411022) | |
| 516-731, gnl|canFam2|chr33 (32801390-32801680) | |
| 516-731, gnl|dasNov1|scaffold_202087 (348-57) | |
| 516-731, gnl|echTel1|scaffold_291573 (70282-69989) | |
| 516-731, gnl|galGal2|chr9 (8928718-8928985) | |
| 516-731, gnl|hg17|chr3 (197943082-197943379) | |
| 516-731, gnl|Hg17|chr3 (197943102-197943317) | |
| 516-731, gnl|loxAfr1|scaffold_12045 (20261-19967) | |
| 516-731, gnl|mm7|chr16 (31762055-31761804) | |
| 516-731, gnl|Mm7|chr16 (31762034-31761819) | |
| 516-731, gnl|monDom2|scaffold_24 (26543946-26544226) | |
| 516-731, gnl|oryCun1|scaffold_214084 (284311-284606) | |
| 516-731, gnl|panTro1|chr2 (202125116-202125413) | |
| 516-731, gnl|rheMac2|chr2 (188703341-188703044) | |
| 516-731, gnl|rn3|chr11 (70578329-70578598) | |
| 833-1017, gnl|bosTau2|chr1 (43414078-43414262) | |
| 833-1017, gnl|canFam2|chr33 (32806340-32806690) | |
| 833-1017, gnl|dasNov1|scaffold_15271 (4022-4310) | |
| 833-1017, gnl|echTel1|scaffold_291573 (49351-49016) | |
| 833-1017, gnl|hg17|chr3 (197948925-197949227) | |
| 833-1017, gnl|Hg17|chr3 (197948940-197949124) | |
| 833-1017, gnl|loxAfr1|scaffold_12045 (10583-10274) | |
| 833-1017, gnl|mm7|chr16 (31759168-31758794) | |
| 833-1017, gnl|Mm7|chr16 (31759151-31758959) | |
| 833-1017, gnl|monDom2|scaffold_24 (26549840-26550163) | |
| 833-1017, gnl|oryCun1|scaffold_85673 (2512-2208) | |
| 833-1017, gnl|panTro1|chr2 (202131810-202132112) | |
| 833-1017, gnl|rheMac2|chr2 (188696847-188696540) | |
| 833-1017, gnl|rn3|chr11 (70582336-70582719) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| vin (0.332557) | |
| ece (0.229305) | |
| nlu (0.191681) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| kid (0.129735) | |
| cbr (0.127975) | |
| thg (0.126791) | |
| eep (0.122564) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| vin (0.332557) | |
| ece (0.229305) | |
| nlu (0.191681) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| kid (0.129735) | |
| cbr (0.127975) | |
| thg (0.126791) | |
| eep (0.122564) |