Ss1.1-Pig4-TMW8063A01.5.5
|
AAGCCACCATGGCGTCCAGTGGGGCCCGCGGGCCGACGCTGCGCTGGGCACTGGCCCTCG
GCGGCGCCGCGCTGCTCCTACTGCTCCTGCCGACGGCCTCGGCGCAGGCTTGCTCTCAGC
ACACAAACAGGACGTGCGAAGAGTGCCTGAGGAACGTCTCTTGTCTCTGGTGCAACACCA
ACCAGGCGTGCCTGGACTACCCGGTGACCAGGGTCCTGCCGCCCAGCTCCCTCTGCCAGC
TGAGCTCTGCACGCTGGGGCGTGTGCTGGGTGAACTTCGAGGCCTTGATCATCACCCTGT
CGGTGCTCGGGGGCTCCGTGCTCCTGGGCGTCGCCATCTGCTGCTGCTGCTGCTGCTGCC
CGAGGAAGCGGAGCCGCAGGCCCGACCGGAGCGAGGAGAAGGCGGAGCGGGAGCGCGAGG
AGCGGCGGGTCCGGCAGGAGGAGCGGAGAGCAGAGATGAAGTCAAGACACGATGAGATCA
GAAGAAAATACGGTTTGTTTAAAGAAGACAATCCGTACGCCAGATTCGAAAACAACTAGA
GGCGCGTCATGCGAGGCAGCGTCTCCTCGCCTGGCCCGGGGCTGCGGGTCAGCAGCGGCC
ACGGCCTCGTCCGCCTCGGCCCTGGGGCGGCCCGTGGGAAGCTGCCCCCCAGGTGCAGGC
CTGTGAGCTTTGTCCTCTTTTTTCCTGTTTCTGTCTTTGTCCCTTGAGACATTAAGCCTG
TCAGGGCCTTTGGTTGTGTTGTCATTAATCTGAGGAAACCGCACGTTCCTGCCCCTCCCC
AGTCCACCTGGGAGCCGGTGCCGACCGCGCCCTGTGTCCCGGGCCTGGCGCGCGCGGCTC
CACATGCCGGAAGGCAGTGCGTTTTCAGTCTGTTGTGGGACCCCCGACCAGCCAGCCCTT
GTCATTTCCCCGACGAGCCGAGCCGGCTCTCCATTGCCCGCCGTGTCCCGGGCGCCGTCT
GCTGAGGGTTCCCGTCCATCTGCACCAGCTGGCACCAAGCAGTCGCTAAAACTCCCCTTT
TTAGGTGCGGCCCTAGAAAGACAAAAAAGAGGTTTCACCCGAAGCCTTCCTTTGGAAGCG
TAGGCCACCTGGGGGCTGGCTTTTCAATCAGCATCTGGACTGGCACACGAGGCGTTTCTT
CCTGGGAAAATCTGAATGTGGACCCTCTGGCCAGCAGTCACCCCGTGCAGGGGCGGGGAC
ACTTGAGAAGCTTTACCTGCACCCTTCTCTGCCCCACTGACCGCAGGCCTGGGGCCCGGG
CACAGTCTCTCCCGAGTCCCAGACCCTCCCTGCCTGTCCTCAGTGCTCACCTGGGCACCG
CGTGCGACGGTAGGTCCTCCGGGAAGGGACTGTGTCCTGGGCTCTCCCCGGGGGACCCTG
TGAGCCAGGGTGCTGAGGGCTGGGCGGCGGTGCAGAGATGCTGCTGGTTGTCCTGCTGAC
CAGACCACCCGGCCCCCGGCCAGCTCCGTGGATCTCCTTCGGGCGGCCTCATCTGCGGTG
GCCCCGAGGTGCCAGACGCGGCAGTCGTCCCTCCAGTGAAGACATGTGACTGCCGTCCGT
GGTCTGCGCGCTTCCAGGCAGGTTCGCAGACAATGAAGTGACTGGTTCCTCCTTGAAATC
TGAACACAGTTCTAGTTGCCACATTGCTTTGACTTAGAGGAAACCGAGCTTTGGGACGGC
AGGTGAGCGGCTGCATGAAAGGACTCAGGCAGAGCCAGCGACCAAACACACCAGCGCACG
GCCCGCCAGGCCTTGTCCACACGGACCCAGCGACCAAACACGCCAGCGACGGCCCGCCAG
GCCTTGTCCACACGGACCCAGTGACCAAACACGCCAGCGACGGCCCGCCAGGCCTTGTCC
ACACGGACCCAGTGACCAAACACGCCGGCGCACGGCCCGCCAGGCCTTGTCCACGCGGAC
CCAGCGACCAAACACGCCGGCGTGCGGCCCGCCAGGCCTTGTCCACACCCCCTGTGTCGA
TCTAACCGGTTGACCCTGGCTTCTCACAGACTAAGAAGCAACCTTTAACAGACTCTTGAG
TCTTATTCTTTGATTTCTTGGGCATTTGATTGCAGCAAAGTGTTAAGAGACATTCCCGTG
TCCTTCGTAACAGCCTGCAGAGTTTTCCTTTCTACTCTTTGTTCATAAAAATCTTTGTAA
GAGACTCGAGTCAACACCGAGTCTGGGTGTAAATCCCTCTTTGCTGCCTTGCGGCTGCCG
AGCTGAGGCGAGTGGGTTGTGAGATAAAAACCCCATCCTTCCGCGCGGCACAGAGCCGGC
TGCGGGCACCGCCGCTTCCCTGTGCTCTTCGACTTGCTGCCAAGAGCAGTCCAACCTGGA
GCCTCCAGGAACCGCGTAACCTGAGTGCCTTCATCTGTAGCCACTTTCCAGTCAGCGGCC
CAATACACGTTTTTGCTGGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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Blue-coloured subsequences are predicted RNA structures by RNAz
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AAGCCACCATGGCGTCCAGTGGGGCCCGCGGGCCGACGCTGCGCTGGGCACTGGCCCTCG
GCGGCGCCGCGCTGCTCCTACTGCTCCTGCCGACGGCCTCGGCGCAGGCTTGCTCTCAGC
ACACAAACAGGACGTGCGAAGAGTGCCTGAGGAACGTCTCTTGTCTCTGGTGCAACACCA
ACCAGGCGTGCCTGGACTACCCGGTGACCAGGGTCCTGCCGCCCAGCTCCCTCTGCCAGC
TGAGCTCTGCACGCTGGGGCGTGTGCTGGGTGAACTTCGAGGCCTTGATCATCACCCTGT
CGGTGCTCGGGGGCTCCGTGCTCCTGGGCGTCGCCATCTGCTGCTGCTGCTGCTGCTGCC
CGAGGAAGCGGAGCCGCAGGCCCGACCGGAGCGAGGAGAAGGCGGAGCGGGAGCGCGAGG
AGCGGCGGGTCCGGCAGGAGGAGCGGAGAGCAGAGATGAAGTCAAGACACGATGAGATCA
GAAGAAAATACGGTTTGTTTAAAGAAGACAATCCGTACGCCAGATTCGAAAACAACTAGA
GGCGCGTCATGCGAGGCAGCGTCTCCTCGCCTGGCCCGGGGCTGCGGGTCAGCAGCGGCC
ACGGCCTCGTCCGCCTCGGCCCTGGGGCGGCCCGTGGGAAGCTGCCCCCCAGGTGCAGGC
CTGTGAGCTTTGTCCTCTTTTTTCCTGTTTCTGTCTTTGTCCCTTGAGACATTAAGCCTG
TCAGGGCCTTTGGTTGTGTTGTCATTAATCTGAGGAAACCGCACGTTCCTGCCCCTCCCC
AGTCCACCTGGGAGCCGGTGCCGACCGCGCCCTGTGTCCCGGGCCTGGCGCGCGCGGCTC
CACATGCCGGAAGGCAGTGCGTTTTCAGTCTGTTGTGGGACCCCCGACCAGCCAGCCCTT
GTCATTTCCCCGACGAGCCGAGCCGGCTCTCCATTGCCCGCCGTGTCCCGGGCGCCGTCT
GCTGAGGGTTCCCGTCCATCTGCACCAGCTGGCACCAAGCAGTCGCTAAAACTCCCCTTT
TTAGGTGCGGCCCTAGAAAGACAAAAAAGAGGTTTCACCCGAAGCCTTCCTTTGGAAGCG
TAGGCCACCTGGGGGCTGGCTTTTCAATCAGCATCTGGACTGGCACACGAGGCGTTTCTT
CCTGGGAAAATCTGAATGTGGACCCTCTGGCCAGCAGTCACCCCGTGCAGGGGCGGGGAC
ACTTGAGAAGCTTTACCTGCACCCTTCTCTGCCCCACTGACCGCAGGCCTGGGGCCCGGG
CACAGTCTCTCCCGAGTCCCAGACCCTCCCTGCCTGTCCTCAGTGCTCACCTGGGCACCG
CGTGCGACGGTAGGTCCTCCGGGAAGGGACTGTGTCCTGGGCTCTCCCCGGGGGACCCTG
TGAGCCAGGGTGCTGAGGGCTGGGCGGCGGTGCAGAGATGCTGCTGGTTGTCCTGCTGAC
CAGACCACCCGGCCCCCGGCCAGCTCCGTGGATCTCCTTCGGGCGGCCTCATCTGCGGTG
GCCCCGAGGTGCCAGACGCGGCAGTCGTCCCTCCAGTGAAGACATGTGACTGCCGTCCGT
GGTCTGCGCGCTTCCAGGCAGGTTCGCAGACAATGAAGTGACTGGTTCCTCCTTGAAATC
TGAACACAGTTCTAGTTGCCACATTGCTTTGACTTAGAGGAAACCGAGCTTTGGGACGGC
AGGTGAGCGGCTGCATGAAAGGACTCAGGCAGAGCCAGCGACCAAACACACCAGCGCACG
GCCCGCCAGGCCTTGTCCACACGGACCCAGCGACCAAACACGCCAGCGACGGCCCGCCAG
GCCTTGTCCACACGGACCCAGTGACCAAACACGCCAGCGACGGCCCGCCAGGCCTTGTCC
ACACGGACCCAGTGACCAAACACGCCGGCGCACGGCCCGCCAGGCCTTGTCCACGCGGAC
CCAGCGACCAAACACGCCGGCGTGCGGCCCGCCAGGCCTTGTCCACACCCCCTGTGTCGA
TCTAACCGGTTGACCCTGGCTTCTCACAGACTAAGAAGCAACCTTTAACAGACTCTTGAG
TCTTATTCTTTGATTTCTTGGGCATTTGATTGCAGCAAAGTGTTAAGAGACATTCCCGTG
TCCTTCGTAACAGCCTGCAGAGTTTTCCTTTCTACTCTTTGTTCATAAAAATCTTTGTAA
GAGACTCGAGTCAACACCGAGTCTGGGTGTAAATCCCTCTTTGCTGCCTTGCGGCTGCCG
AGCTGAGGCGAGTGGGTTGTGAGATAAAAACCCCATCCTTCCGCGCGGCACAGAGCCGGC
TGCGGGCACCGCCGCTTCCCTGTGCTCTTCGACTTGCTGCCAAGAGCAGTCCAACCTGGA
GCCTCCAGGAACCGCGTAACCTGAGTGCCTTCATCTGTAGCCACTTTCCAGTCAGCGGCC
CAATACACGTTTTTGCTGGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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2-108, gnl|bosTau2|chr1 (94742183-94742077) |
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2-108, gnl|galGal2|chrUn (135232876-135232549) |
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2-108, gnl|hg17|chr21 (45117842-45118194) |
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2-108, gnl|Hg17|chr21 (45117962-45117845) |
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2-108, gnl|loxAfr1|scaffold_37268 (710-357) |
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2-108, gnl|mm7|chr10 (77236520-77236211) |
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2-108, gnl|Mm7|chr10 (77236403-77236500) |
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2-108, gnl|panTro1|chr22 (45290775-45291128) |
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2-108, gnl|rheMac2|chr3 (1827064-1826732) |
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2-108, gnl|rn3|chr20 (11431995-11432293) |
| |
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270-450, gnl|bosTau2|chr1 (94729256-94729079) |
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270-450, gnl|Hg17|chr21 (45100708-45100531) |
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270-450, gnl|Mm7|chr10 (77247433-77247610) |
| |
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492-889, gnl|bosTau2|chr1 (94726641-94726267) |
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492-889, gnl|Hg17|chr21 (45095971-45095489) |
| |
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1993-2249, gnl|bosTau2|chr1 (94725396-94725131) |
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1993-2249, gnl|Hg17|chr21 (45094388-45094122) |
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1993-2249, gnl|Mm7|chr10 (77252919-77253159) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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2-108, gnl|bosTau2|chr1 (94742183-94742077) |
|
2-108, gnl|galGal2|chrUn (135232876-135232549) |
|
2-108, gnl|hg17|chr21 (45117842-45118194) |
|
2-108, gnl|Hg17|chr21 (45117962-45117845) |
|
2-108, gnl|loxAfr1|scaffold_37268 (710-357) |
|
2-108, gnl|mm7|chr10 (77236520-77236211) |
|
2-108, gnl|Mm7|chr10 (77236403-77236500) |
|
2-108, gnl|panTro1|chr22 (45290775-45291128) |
|
2-108, gnl|rheMac2|chr3 (1827064-1826732) |
|
2-108, gnl|rn3|chr20 (11431995-11432293) |
| |
|
270-450, gnl|bosTau2|chr1 (94729256-94729079) |
|
270-450, gnl|Hg17|chr21 (45100708-45100531) |
|
270-450, gnl|Mm7|chr10 (77247433-77247610) |
| |
|
492-889, gnl|bosTau2|chr1 (94726641-94726267) |
|
492-889, gnl|Hg17|chr21 (45095971-45095489) |
| |
|
1993-2249, gnl|bosTau2|chr1 (94725396-94725131) |
|
1993-2249, gnl|Hg17|chr21 (45094388-45094122) |
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1993-2249, gnl|Mm7|chr10 (77252919-77253159) |
|
clu (0.837521) |
|
cga (0.558191) |
|
amn (0.417711) |
|
fli (0.405762) |
|
pla (0.401016) |
|
fcc (0.39557) |
|
col (0.390016) |
|
nlu (0.383362) |
|
eru (0.360144) |
|
cty (0.31224) |
|
cag (0.302389) |
|
hyp (0.285673) |
|
fce (0.271592) |
|
ute (0.265569) |
|
cov (0.264306) |
|
cly (0.241284) |
|
med (0.232504) |
|
tes (0.207814) |
|
jej (0.197844) |
|
eje (0.197668) |
|
ton (0.1755) |
|
fbs (0.175346) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
nca (0.136874) |
|
nmm (0.132802) |
|
ese (0.126502) |
|
jca (0.11396) |
|
clu (0.837521) |
|
cga (0.558191) |
|
amn (0.417711) |
|
fli (0.405762) |
|
pla (0.401016) |
|
fcc (0.39557) |
|
col (0.390016) |
|
nlu (0.383362) |
|
eru (0.360144) |
|
cty (0.31224) |
|
cag (0.302389) |
|
hyp (0.285673) |
|
fce (0.271592) |
|
ute (0.265569) |
|
cov (0.264306) |
|
cly (0.241284) |
|
med (0.232504) |
|
tes (0.207814) |
|
jej (0.197844) |
|
eje (0.197668) |
|
ton (0.1755) |
|
fbs (0.175346) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
nca (0.136874) |
|
nmm (0.132802) |
|
ese (0.126502) |
|
jca (0.11396) |
