Ss1.1-Pig4-TMW8063A09.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
CCGAGGAGGCTGCTGGATACCCTAGGAGGCTGCTGAGCCGCGGGCTGGGCTCCGAGTAGA GTGTCTGGCCTGTTTGCCGCAGGATGAGGCTGCTCTCCCGGGCCCTCCGCCTCTGGGAGC TGGGCACTCAGACTGCCTCTAGGAGGCCGGTCAGTGCCCAGGAGTGTCTGCGGCCCCGGA GCCCCGGGACCAGATGCTGGCTTTCCACGCCGGCTGATGGACCCACGTCTTCTCTGCTGT TTCAACCCAGTGTCACCGCCAGGATCATGCGGCCCGACGACGCTAACGTGGCCGGCAATG TGCACGGAGGAACCATCCTGAAGATGATAGAGGAGGCCGGAGCCATCATCAGCACCCGGC ACTGCAACAGTCAGGACGGGGAGCGCTGCGTGGCCGCCCTGGCCCGGGTCGAGCGCACCG ACTTCCTGTCGCCCATGTGCATCGGCGAGGTGGCGCACGTCAGCGCGGAGATCACCTACA CGTCCAAGCACTCCGTGGAGGTCCAGGTCCACGTCATGTCCGAGAACATCCTCACAGGTA ACAAAAAGCTGACCAATAAAGCCACCCTGTGGTACGTGCCCCTGTCGCTGAAGAATGTGG ACAAGGTCCTGGAGGTGCCACCAGTCGTGTACTCCCGGCAGGAGCAGGAGGAGGAGGGCC GCAAGCGCTACGAGGCCCAGAAGCTGGAGCGCATGGAGACCAAGGGGAGGAACGGGGACA TCGTCCAGCCTGTCCTGAACCCAGAGCCAAACACGGTCAGCTACAGCCAGTCCAGCTTGA TCCACCTGGTGGGGCCTTCCGACTGCACCCTGCACGGCTTCGTGCACGGAGGTGTCACCA TGAAGCTCATGGACGAGGTGGCCGGGATCGTGGCCGCACGTCACTGCAAAACCAACATCG TCACTGCTTCCGTGGACGCCATTAACTTCCACGACAAGATCCGAAAAGGCTGTGTCATCA CCATCTCCGGCCGCATGACCTTCACGAGCAACAAGTCCATGGAGATCGAGGTCTTGGTGG ACGCTGACCCCGTGGTGGACAACTCCCAGAAGCGCTACCGGGCCGCCAGTGCCTTCTTCA CCTATGTGTCCCTGAGCCAGGAGGGCAAGTCTCTGCCTGTGCCCCAGCTCCTGCCTGAGA CTGAGGACGAGAAGAAGCGCTTCGAGGAGGGCAAAGGGCGGTACCTGCAGATGAAGGCGA AACGGCAGGGCCAGGTGGAGCCGCAGCCCTAGACGCCCCCCTCCTGCCGCTGGGGCCTGG AGCTGCCCCCAGTGTTTGATCGCTTAGGAGTTACCCCTTGGCCAAGAACCCCAGTCACGT TGACAGCTGGTGTTGTGTGAAGTATTGTCTCGCAGTGTTATTTAACCTGTTATTTAATCC TGAGAACCTGTACACACCAAAGCTTTCTTTCTATCATTCCAGTGTAAATGCTACACGGTA TTGTCCTGGCGCCCCGAGGCGCTCCCTGCGGAGTCCGGGGCACACACTGTACGGTGTGTA AAGAATCCAGCATCACTAATAAAGCTGCTGTTTGGCTGGAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
CCGAGGAGGCTGCTGGATACCCTAGGAGGCTGCTGAGCCGCGGGCTGGGCTCCGAGTAGA GTGTCTGGCCTGTTTGCCGCAGGATGAGGCTGCTCTCCCGGGCCCTCCGCCTCTGGGAGC TGGGCACTCAGACTGCCTCTAGGAGGCCGGTCAGTGCCCAGGAGTGTCTGCGGCCCCGGA GCCCCGGGACCAGATGCTGGCTTTCCACGCCGGCTGATGGACCCACGTCTTCTCTGCTGT TTCAACCCAGTGTCACCGCCAGGATCATGCGGCCCGACGACGCTAACGTGGCCGGCAATG TGCACGGAGGAACCATCCTGAAGATGATAGAGGAGGCCGGAGCCATCATCAGCACCCGGC ACTGCAACAGTCAGGACGGGGAGCGCTGCGTGGCCGCCCTGGCCCGGGTCGAGCGCACCG ACTTCCTGTCGCCCATGTGCATCGGCGAGGTGGCGCACGTCAGCGCGGAGATCACCTACA CGTCCAAGCACTCCGTGGAGGTCCAGGTCCACGTCATGTCCGAGAACATCCTCACAGGTA ACAAAAAGCTGACCAATAAAGCCACCCTGTGGTACGTGCCCCTGTCGCTGAAGAATGTGG ACAAGGTCCTGGAGGTGCCACCAGTCGTGTACTCCCGGCAGGAGCAGGAGGAGGAGGGCC GCAAGCGCTACGAGGCCCAGAAGCTGGAGCGCATGGAGACCAAGGGGAGGAACGGGGACA TCGTCCAGCCTGTCCTGAACCCAGAGCCAAACACGGTCAGCTACAGCCAGTCCAGCTTGA TCCACCTGGTGGGGCCTTCCGACTGCACCCTGCACGGCTTCGTGCACGGAGGTGTCACCA TGAAGCTCATGGACGAGGTGGCCGGGATCGTGGCCGCACGTCACTGCAAAACCAACATCG TCACTGCTTCCGTGGACGCCATTAACTTCCACGACAAGATCCGAAAAGGCTGTGTCATCA CCATCTCCGGCCGCATGACCTTCACGAGCAACAAGTCCATGGAGATCGAGGTCTTGGTGG ACGCTGACCCCGTGGTGGACAACTCCCAGAAGCGCTACCGGGCCGCCAGTGCCTTCTTCA CCTATGTGTCCCTGAGCCAGGAGGGCAAGTCTCTGCCTGTGCCCCAGCTCCTGCCTGAGA CTGAGGACGAGAAGAAGCGCTTCGAGGAGGGCAAAGGGCGGTACCTGCAGATGAAGGCGA AACGGCAGGGCCAGGTGGAGCCGCAGCCCTAGACGCCCCCCTCCTGCCGCTGGGGCCTGG AGCTGCCCCCAGTGTTTGATCGCTTAGGAGTTACCCCTTGGCCAAGAACCCCAGTCACGT TGACAGCTGGTGTTGTGTGAAGTATTGTCTCGCAGTGTTATTTAACCTGTTATTTAATCC TGAGAACCTGTACACACCAAAGCTTTCTTTCTATCATTCCAGTGTAAATGCTACACGGTA TTGTCCTGGCGCCCCGAGGCGCTCCCTGCGGAGTCCGGGGCACACACTGTACGGTGTGTA AAGAATCCAGCATCACTAATAAAGCTGCTGTTTGGCTGGAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
424-542, - strand, RNAz p=0.749428 |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
424-542, - strand, RNAz p=0.749428 |
Aligned organism(s): 102 entry(ies) | More info |
Aligned organism(s): 102 entry(ies) | Help | Less info |
24-255, gnl|bosTau2|chr16 (34802482-34802706) | |
24-255, gnl|canFam2|chr5 (63237833-63238354) | |
24-255, gnl|dasNov1|scaffold_194893 (527-1035) | |
24-255, gnl|echTel1|scaffold_271200 (9762-10193) | |
24-255, gnl|hg17|chr1 (6379511-6379998) | |
24-255, gnl|Hg17|chr1 (6380056-6379827) | |
24-255, gnl|loxAfr1|scaffold_61578 (38536-39050) | |
24-255, gnl|mm7|chr4 (151176243-151175750) | |
24-255, gnl|oryCun1|scaffold_212827 (4721-4257) | |
24-255, gnl|panTro1|chr1 (6338693-6339180) | |
24-255, gnl|rheMac2|chr1 (9400008-9400484) | |
24-255, gnl|rn3|chr5 (169426757-169426271) | |
380-542, gnl|bosTau2|chr16 (34842761-34842923) | |
380-542, gnl|canFam2|chr5 (63214477-63214595) | |
380-542, gnl|canFam2|chr5 (63214487-63214644) | |
380-542, gnl|danRer3|chrNA (87590525-87590633) | |
380-542, gnl|danRer3|chrNA (87590525-87590683) | |
380-542, gnl|dasNov1|scaffold_45921 (11634-11751) | |
380-542, gnl|dasNov1|scaffold_45921 (11643-11802) | |
380-542, gnl|echTel1|scaffold_151149 (162-321) | |
380-542, gnl|echTel1|scaffold_39364 (233-351) | |
380-542, gnl|fr1|chrUn (70484571-70484679) | |
380-542, gnl|fr1|chrUn (70484571-70484729) | |
380-542, gnl|galGal2|chr21 (537555-537446) | |
380-542, gnl|galGal2|chr21 (537554-537395) | |
380-542, gnl|hg17|chr1 (6333749-6333866) | |
380-542, gnl|Hg17|chr1 (6333916-6333755) | |
380-542, gnl|hg17|chr4 (39868007-39868166) | |
380-542, gnl|loxAfr1|scaffold_4136 (10506-10388) | |
380-542, gnl|loxAfr1|scaffold_4136 (10496-10337) | |
380-542, gnl|mm7|chr4 (151207451-151207329) | |
380-542, gnl|mm7|chr4 (151207437-151207278) | |
380-542, gnl|Mm7|chr4 (151207277-151207439) | |
380-542, gnl|monDom2|scaffold_27 (25483272-25483116) | |
380-542, gnl|monDom2|scaffold_78 (2059782-2059673) | |
380-542, gnl|oryCun1|scaffold_198087 (1637-1520) | |
380-542, gnl|oryCun1|scaffold_198087 (1628-1469) | |
380-542, gnl|panTro1|chr1 (6271051-6271168) | |
380-542, gnl|panTro1|chr3 (42563715-42563874) | |
380-542, gnl|rheMac2|chr1 (9347938-9348055) | |
380-542, gnl|rheMac2|chr5 (35079678-35079837) | |
380-542, gnl|rn3|chr5 (169457205-169457096) | |
380-542, gnl|rn3|chr5 (169457204-169457045) | |
380-542, gnl|tetNig1|chr9 (1333177-1333059) | |
380-542, gnl|tetNig1|chr9 (1333167-1333010) | |
380-542, gnl|xenTro1|scaffold_46 (997157-997266) | |
380-542, gnl|xenTro1|scaffold_46 (997158-997317) | |
629-744, gnl|bosTau2|chr16 (34851778-34851893) | |
629-744, gnl|canFam2|chr5 (63204886-63205000) | |
629-744, gnl|danRer3|chrNA (87564551-87564654) | |
629-744, gnl|dasNov1|scaffold_45921 (1188-1301) | |
629-744, gnl|echTel1|scaffold_10997 (112-6) | |
629-744, gnl|fr1|chrUn (70478551-70478641) | |
629-744, gnl|galGal2|chr21 (538483-538368) | |
629-744, gnl|Hg17|chr1 (6321740-6321625) | |
629-744, gnl|hg17|chr4 (39867802-39867917) | |
629-744, gnl|loxAfr1|scaffold_78403 (5399-5284) | |
629-744, gnl|mm7|chr4 (151219432-151219317) | |
629-744, gnl|Mm7|chr4 (151219316-151219431) | |
629-744, gnl|monDom2|scaffold_27 (25483470-25483357) | |
629-744, gnl|oryCun1|scaffold_198087 (12392-12277) | |
629-744, gnl|panTro1|chr3 (42563510-42563625) | |
629-744, gnl|rheMac2|chr5 (35079473-35079588) | |
629-744, gnl|rn3|chr5 (169468655-169468540) | |
629-744, gnl|tetNig1|chr9 (1338529-1338424) | |
830-949, gnl|bosTau2|chr16 (34869977-34870096) | |
830-949, gnl|canFam2|chr5 (63177705-63177826) | |
830-949, gnl|canFam2|chr5 (63177708-63177821) | |
830-949, gnl|danRer3|chrNA (87507998-87508119) | |
830-949, gnl|danRer3|chrNA (87508001-87508114) | |
830-949, gnl|dasNov1|scaffold_46236 (3056-2935) | |
830-949, gnl|dasNov1|scaffold_46236 (3053-2934) | |
830-949, gnl|echTel1|scaffold_10997 (317-197) | |
830-949, gnl|echTel1|scaffold_10997 (314-194) | |
830-949, gnl|fr1|chrUn (70471019-70471140) | |
830-949, gnl|fr1|chrUn (70471022-70471135) | |
830-949, gnl|galGal2|chr21 (539731-539614) | |
830-949, gnl|galGal2|chr21 (539728-539615) | |
830-949, gnl|hg17|chr1 (6289190-6289311) | |
830-949, gnl|Hg17|chr1 (6289308-6289189) | |
830-949, gnl|hg17|chr4 (39867600-39867719) | |
830-949, gnl|loxAfr1|scaffold_4136 (40973-40852) | |
830-949, gnl|loxAfr1|scaffold_4136 (40970-40851) | |
830-949, gnl|mm7|chr4 (151242809-151242688) | |
830-949, gnl|mm7|chr4 (151242806-151242687) | |
830-949, gnl|Mm7|chr4 (151242689-151242808) | |
830-949, gnl|monDom2|scaffold_27 (25483663-25483553) | |
830-949, gnl|monDom2|scaffold_78 (2101229-2101108) | |
830-949, gnl|oryCun1|scaffold_105685 (4199-4320) | |
830-949, gnl|oryCun1|scaffold_105685 (4202-4318) | |
830-949, gnl|panTro1|chr1 (6221758-6221879) | |
830-949, gnl|panTro1|chr3 (42563308-42563427) | |
830-949, gnl|rheMac2|chr1 (9304105-9304226) | |
830-949, gnl|rheMac2|chr5 (35079271-35079390) | |
830-949, gnl|rn3|chr5 (169493992-169493871) | |
830-949, gnl|rn3|chr5 (169493989-169493870) | |
830-949, gnl|tetNig1|chr9 (1344980-1344859) | |
830-949, gnl|tetNig1|chr9 (1344977-1344864) | |
830-949, gnl|xenTro1|scaffold_46 (946225-946341) | |
1133-1540, gnl|bosTau2|chr16 (34891558-34891944) | |
1133-1540, gnl|Hg17|chr1 (6259022-6258598) | |
1133-1540, gnl|Mm7|chr4 (151261015-151261390) |
Aligned organism(s): 102 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
24-255, gnl|bosTau2|chr16 (34802482-34802706) | |
24-255, gnl|canFam2|chr5 (63237833-63238354) | |
24-255, gnl|dasNov1|scaffold_194893 (527-1035) | |
24-255, gnl|echTel1|scaffold_271200 (9762-10193) | |
24-255, gnl|hg17|chr1 (6379511-6379998) | |
24-255, gnl|Hg17|chr1 (6380056-6379827) | |
24-255, gnl|loxAfr1|scaffold_61578 (38536-39050) | |
24-255, gnl|mm7|chr4 (151176243-151175750) | |
24-255, gnl|oryCun1|scaffold_212827 (4721-4257) | |
24-255, gnl|panTro1|chr1 (6338693-6339180) | |
24-255, gnl|rheMac2|chr1 (9400008-9400484) | |
24-255, gnl|rn3|chr5 (169426757-169426271) | |
380-542, gnl|bosTau2|chr16 (34842761-34842923) | |
380-542, gnl|canFam2|chr5 (63214477-63214595) | |
380-542, gnl|canFam2|chr5 (63214487-63214644) | |
380-542, gnl|danRer3|chrNA (87590525-87590633) | |
380-542, gnl|danRer3|chrNA (87590525-87590683) | |
380-542, gnl|dasNov1|scaffold_45921 (11634-11751) | |
380-542, gnl|dasNov1|scaffold_45921 (11643-11802) | |
380-542, gnl|echTel1|scaffold_151149 (162-321) | |
380-542, gnl|echTel1|scaffold_39364 (233-351) | |
380-542, gnl|fr1|chrUn (70484571-70484679) | |
380-542, gnl|fr1|chrUn (70484571-70484729) | |
380-542, gnl|galGal2|chr21 (537555-537446) | |
380-542, gnl|galGal2|chr21 (537554-537395) | |
380-542, gnl|hg17|chr1 (6333749-6333866) | |
380-542, gnl|Hg17|chr1 (6333916-6333755) | |
380-542, gnl|hg17|chr4 (39868007-39868166) | |
380-542, gnl|loxAfr1|scaffold_4136 (10506-10388) | |
380-542, gnl|loxAfr1|scaffold_4136 (10496-10337) | |
380-542, gnl|mm7|chr4 (151207451-151207329) | |
380-542, gnl|mm7|chr4 (151207437-151207278) | |
380-542, gnl|Mm7|chr4 (151207277-151207439) | |
380-542, gnl|monDom2|scaffold_27 (25483272-25483116) | |
380-542, gnl|monDom2|scaffold_78 (2059782-2059673) | |
380-542, gnl|oryCun1|scaffold_198087 (1637-1520) | |
380-542, gnl|oryCun1|scaffold_198087 (1628-1469) | |
380-542, gnl|panTro1|chr1 (6271051-6271168) | |
380-542, gnl|panTro1|chr3 (42563715-42563874) | |
380-542, gnl|rheMac2|chr1 (9347938-9348055) | |
380-542, gnl|rheMac2|chr5 (35079678-35079837) | |
380-542, gnl|rn3|chr5 (169457205-169457096) | |
380-542, gnl|rn3|chr5 (169457204-169457045) | |
380-542, gnl|tetNig1|chr9 (1333177-1333059) | |
380-542, gnl|tetNig1|chr9 (1333167-1333010) | |
380-542, gnl|xenTro1|scaffold_46 (997157-997266) | |
380-542, gnl|xenTro1|scaffold_46 (997158-997317) | |
629-744, gnl|bosTau2|chr16 (34851778-34851893) | |
629-744, gnl|canFam2|chr5 (63204886-63205000) | |
629-744, gnl|danRer3|chrNA (87564551-87564654) | |
629-744, gnl|dasNov1|scaffold_45921 (1188-1301) | |
629-744, gnl|echTel1|scaffold_10997 (112-6) | |
629-744, gnl|fr1|chrUn (70478551-70478641) | |
629-744, gnl|galGal2|chr21 (538483-538368) | |
629-744, gnl|Hg17|chr1 (6321740-6321625) | |
629-744, gnl|hg17|chr4 (39867802-39867917) | |
629-744, gnl|loxAfr1|scaffold_78403 (5399-5284) | |
629-744, gnl|mm7|chr4 (151219432-151219317) | |
629-744, gnl|Mm7|chr4 (151219316-151219431) | |
629-744, gnl|monDom2|scaffold_27 (25483470-25483357) | |
629-744, gnl|oryCun1|scaffold_198087 (12392-12277) | |
629-744, gnl|panTro1|chr3 (42563510-42563625) | |
629-744, gnl|rheMac2|chr5 (35079473-35079588) | |
629-744, gnl|rn3|chr5 (169468655-169468540) | |
629-744, gnl|tetNig1|chr9 (1338529-1338424) | |
830-949, gnl|bosTau2|chr16 (34869977-34870096) | |
830-949, gnl|canFam2|chr5 (63177705-63177826) | |
830-949, gnl|canFam2|chr5 (63177708-63177821) | |
830-949, gnl|danRer3|chrNA (87507998-87508119) | |
830-949, gnl|danRer3|chrNA (87508001-87508114) | |
830-949, gnl|dasNov1|scaffold_46236 (3056-2935) | |
830-949, gnl|dasNov1|scaffold_46236 (3053-2934) | |
830-949, gnl|echTel1|scaffold_10997 (317-197) | |
830-949, gnl|echTel1|scaffold_10997 (314-194) | |
830-949, gnl|fr1|chrUn (70471019-70471140) | |
830-949, gnl|fr1|chrUn (70471022-70471135) | |
830-949, gnl|galGal2|chr21 (539731-539614) | |
830-949, gnl|galGal2|chr21 (539728-539615) | |
830-949, gnl|hg17|chr1 (6289190-6289311) | |
830-949, gnl|Hg17|chr1 (6289308-6289189) | |
830-949, gnl|hg17|chr4 (39867600-39867719) | |
830-949, gnl|loxAfr1|scaffold_4136 (40973-40852) | |
830-949, gnl|loxAfr1|scaffold_4136 (40970-40851) | |
830-949, gnl|mm7|chr4 (151242809-151242688) | |
830-949, gnl|mm7|chr4 (151242806-151242687) | |
830-949, gnl|Mm7|chr4 (151242689-151242808) | |
830-949, gnl|monDom2|scaffold_27 (25483663-25483553) | |
830-949, gnl|monDom2|scaffold_78 (2101229-2101108) | |
830-949, gnl|oryCun1|scaffold_105685 (4199-4320) | |
830-949, gnl|oryCun1|scaffold_105685 (4202-4318) | |
830-949, gnl|panTro1|chr1 (6221758-6221879) | |
830-949, gnl|panTro1|chr3 (42563308-42563427) | |
830-949, gnl|rheMac2|chr1 (9304105-9304226) | |
830-949, gnl|rheMac2|chr5 (35079271-35079390) | |
830-949, gnl|rn3|chr5 (169493992-169493871) | |
830-949, gnl|rn3|chr5 (169493989-169493870) | |
830-949, gnl|tetNig1|chr9 (1344980-1344859) | |
830-949, gnl|tetNig1|chr9 (1344977-1344864) | |
830-949, gnl|xenTro1|scaffold_46 (946225-946341) | |
1133-1540, gnl|bosTau2|chr16 (34891558-34891944) | |
1133-1540, gnl|Hg17|chr1 (6259022-6258598) | |
1133-1540, gnl|Mm7|chr4 (151261015-151261390) |
Expressed library(ies): 16 entry(ies) | More info |
Expressed library(ies): 16 entry(ies) | Help | Less info |
ece (0.45861) | |
ill (0.351185) | |
hyp (0.285673) | |
ebs (0.236602) | |
fcc (0.197785) | |
col (0.195008) | |
nlu (0.191681) | |
fty (0.17584) | |
eye (0.170503) | |
fhi (0.169578) | |
nco (0.161734) | |
cag (0.151194) | |
eep (0.122564) | |
ecc (0.115035) | |
cty (0.10408) | |
nbm (0.0993246) |
Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
ece (0.45861) | |
ill (0.351185) | |
hyp (0.285673) | |
ebs (0.236602) | |
fcc (0.197785) | |
col (0.195008) | |
nlu (0.191681) | |
fty (0.17584) | |
eye (0.170503) | |
fhi (0.169578) | |
nco (0.161734) | |
cag (0.151194) | |
eep (0.122564) | |
ecc (0.115035) | |
cty (0.10408) | |
nbm (0.0993246) |