Non-Coding RNA Search

Ss1.1-Pig4-TMW8063A11.5

Sequence:


               
               TTAAACTCGTTGTCGGTGGGGGAGTGCCCACGAGTGGAAAAGAAACCATATACACCCGAA
GTCCACCTTACTTTGGCCTCTTTGCTCATCCATCTCAAACTTGGAACTGATAACAGGCTC
CAAACATCATTTCATGCCTTGTTGGAGATCGATGCCTACCAGTGACTCATCAGTATTTCA
TCGGAGATGTGGGAGGTTATTTTACCCTATAGTGGTGGGTGTGCCTGTGCGCGTGCACGA
TGTGCGTCCCGGTATGAGGCGCTTGTCTCCAGGTTGCTGCTGCAGAACCAGCTAGAGCTG
TGCATTAAATTGTTTTAGTAGGTCTTCAGATGGGCTCAAGACACAGCTAGGGCTTTTTTT
TTTTTTTAAGTGGTACTATATACCTATCAAAAGTATTGTTTTGAAAAGTATTTTTATACA
CTGCTGGCCTGAAATTGTATTTCAGATTGTGCCTGTTGTGACGTAATCAATAGCAAAAGT
AAAGCCTTCTCCTTCCCACCACTTGCACATAAACCTCATAGTTGTTACTTTAGGCGTTCC
TCCTGTTAGAATAGTTTTTCTTTAGGCTTTACTGATACAGGTTTTGAGTAGCCTCAGAGG
TGAATTTTTCTAATGCAGTGAATCCATACAGATGTGATATTTATATGAATATTTTAGCCA
TGTAATATATTATGTTGAATTCTAGTTCTGTGCAGTAAAGTGTATTATGTTAAAGTATTT
TTTTAAGTTTATATGTGAAGACACATGTCTATTGCAGATGTTGTTAAAGATTGCTTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAACTCGTTGTCGGTGGGGGAGTGCCCACGAGTGGAAAAGAAACCATATACACCCGAA
GTCCACCTTACTTTGGCCTCTTTGCTCATCCATCTCAAACTTGGAACTGATAACAGGCTC
CAAACATCATTTCATGCCTTGTTGGAGATCGATGCCTACCAGTGACTCATCAGTATTTCA
TCGGAGATGTGGGAGGTTATTTTACCCTATAGTGGTGGGTGTGCCTGTGCGCGTGCACGA
TGTGCGTCCCGGTATGAGGCGCTTGTCTCCAGGTTGCTGCTGCAGAACCAGCTAGAGCTG
TGCATTAAATTGTTTTAGTAGGTCTTCAGATGGGCTCAAGACACAGCTAGGGCTTTTTTT
TTTTTTTAAGTGGTACTATATACCTATCAAAAGTATTGTTTTGAAAAGTATTTTTATACA
CTGCTGGCCTGAAATTGTATTTCAGATTGTGCCTGTTGTGACGTAATCAATAGCAAAAGT
AAAGCCTTCTCCTTCCCACCACTTGCACATAAACCTCATAGTTGTTACTTTAGGCGTTCC
TCCTGTTAGAATAGTTTTTCTTTAGGCTTTACTGATACAGGTTTTGAGTAGCCTCAGAGG
TGAATTTTTCTAATGCAGTGAATCCATACAGATGTGATATTTATATGAATATTTTAGCCA
TGTAATATATTATGTTGAATTCTAGTTCTGTGCAGTAAAGTGTATTATGTTAAAGTATTT
TTTTAAGTTTATATGTGAAGACACATGTCTATTGCAGATGTTGTTAAAGATTGCTTAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               19-780, gnl|bosTau2|chr2 (43565261-43564520)
               

               
               19-780, gnl|Hg17|chr2 (120695723-120695037)
               

               
               19-780, gnl|Mm7|chr1 (119388094-119388799)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-780, gnl|bosTau2|chr2 (43565261-43564520)
               

               
               19-780, gnl|Hg17|chr2 (120695723-120695037)
               

               
               19-780, gnl|Mm7|chr1 (119388094-119388799)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               fat (0.294855)
               

               
               cbe (0.239234)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               csk (0.140746)
               

               
               sug (0.127291)
               

               
               nbm (0.0993246)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.294855)
               

               
               cbe (0.239234)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               csk (0.140746)
               

               
               sug (0.127291)
               

               
               nbm (0.0993246)

	19-780, gnl\|bosTau2\|chr2 (43565261-43564520)
	19-780, gnl\|Hg17\|chr2 (120695723-120695037)
	19-780, gnl\|Mm7\|chr1 (119388094-119388799)

	fat (0.294855)
	cbe (0.239234)
	sag (0.182715)
	mgm (0.180343)
	fhi (0.169578)
	cje (0.165235)
	mga (0.160205)
	isp (0.150376)
	csk (0.140746)
	sug (0.127291)
	nbm (0.0993246)