Non-Coding RNA Search

Ss1.1-Pig4-TMW8063A12.5

Sequence:


               
               ACCTGGCTGTCACGGCGCTTCACGCTTGGTGCCTGCCACCCCGCGAACTGCCCGCACTAT
GGCCGCCCCGCCGCAGCTGCGGACTCTGCTCCTTGCGGTCAACGCACTCTTGCGCAAGCG
CCGCTACCACGCTGCGTTGGCCATGATTAAGGGCTTCCGGAACGGAGCAGTCTACGGAGT
CAAAATCCGGGCCCCTCATGCCCTGGTCATGACCTTTCTCTTCCGGAGTGGCAGCCTCTG
GGAGAAGCTGCGGGCCATCCTGCAGGCCACCTACATCCACTCCAGGACCCTGGCCAGCTT
TGTGTTCACCTACAAGGGACTCTGCTCCCTGCAGTCCCATCTGCAGGGCAAGACCTTCCA
GGTGCACTCATTCACTGCTGCCTTCATCGGGGGCCTGCTGCTGTTTGGAGAAAACAATAG
CATCAACAACCAGATCAACATGTACCTGTTATCTCGCCTCCTGTTTGCCCTGTGCCGCCT
GGGTTTGGACAAGGGCTACCTCCCCGAGCCCAGATGGGACCCGTACCCGCTGTTCTCGGG
TTTGGTGTGGGGGCTGGTGCTGTGGCTCTTTGAATACCACCGGCCCACCCTGCAGCCCTC
GCTGCAGTCCTCCATGACCTACCTGTATGAGGACAGCAACACGTGGCACGACCTCTCAGA
CTTCCTCCTCTACAACAAGAAGAAATAACTCGGCCCGAAGTGCTTTTGGGGACTCCGGCG
CTTGCCAGCCATGGCTGCAGATTGGCTCCATCAGCGAATCCCCCAGAAGATCCTGCCTGT
TCAAGATCTGAGGTCTCAGACTCTAGCTTTTCTCAGCCTGGGGTCCTGCTGGCCAAAGTG
AAAACACTGATCTTCAAGTCCCAGTAGGTACTCTTGAATGGTAGAATAAGCCACCGAATC
AGGCCACCGAGCCTTGGCCACGGGGACAGCCGTGCTGCTGACCCTGTGAGACCCGGGCCC
CAGGGGTCATCGAGCTCAGAGGAGGGCGCTGAAGTCTGTTTCTGGTGGGTATGTTCTTCG
GCCGTTCTTCTGTAACCGAGGGCTCTGGCTGGTGGGTGGTTGGTTGCAAATGTGTTTTTA
GAAAATCCTCAGTTCCTTGTCTTAGATGTTCTGTTGGAGAAGCTCTAGAGTTTCCACTGT
CCAGTAGAAACATGATGTGAGTCATATATGTGATTGACATTTTTTTAGTAGCCACATTTT
TTTAAAAAGTAGAAAGAATCAGGTGAGATTAAGGTTAATTATATCTTTTAAGCCAATATT
TTTCAAACATCAGCATTTCAATGTGTAATAAATCTAAAAATCAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCTGGCTGTCACGGCGCTTCACGCTTGGTGCCTGCCACCCCGCGAACTGCCCGCACTAT
GGCCGCCCCGCCGCAGCTGCGGACTCTGCTCCTTGCGGTCAACGCACTCTTGCGCAAGCG
CCGCTACCACGCTGCGTTGGCCATGATTAAGGGCTTCCGGAACGGAGCAGTCTACGGAGT
CAAAATCCGGGCCCCTCATGCCCTGGTCATGACCTTTCTCTTCCGGAGTGGCAGCCTCTG
GGAGAAGCTGCGGGCCATCCTGCAGGCCACCTACATCCACTCCAGGACCCTGGCCAGCTT
TGTGTTCACCTACAAGGGACTCTGCTCCCTGCAGTCCCATCTGCAGGGCAAGACCTTCCA
GGTGCACTCATTCACTGCTGCCTTCATCGGGGGCCTGCTGCTGTTTGGAGAAAACAATAG
CATCAACAACCAGATCAACATGTACCTGTTATCTCGCCTCCTGTTTGCCCTGTGCCGCCT
GGGTTTGGACAAGGGCTACCTCCCCGAGCCCAGATGGGACCCGTACCCGCTGTTCTCGGG
TTTGGTGTGGGGGCTGGTGCTGTGGCTCTTTGAATACCACCGGCCCACCCTGCAGCCCTC
GCTGCAGTCCTCCATGACCTACCTGTATGAGGACAGCAACACGTGGCACGACCTCTCAGA
CTTCCTCCTCTACAACAAGAAGAAATAACTCGGCCCGAAGTGCTTTTGGGGACTCCGGCG
CTTGCCAGCCATGGCTGCAGATTGGCTCCATCAGCGAATCCCCCAGAAGATCCTGCCTGT
TCAAGATCTGAGGTCTCAGACTCTAGCTTTTCTCAGCCTGGGGTCCTGCTGGCCAAAGTG
AAAACACTGATCTTCAAGTCCCAGTAGGTACTCTTGAATGGTAGAATAAGCCACCGAATC
AGGCCACCGAGCCTTGGCCACGGGGACAGCCGTGCTGCTGACCCTGTGAGACCCGGGCCC
CAGGGGTCATCGAGCTCAGAGGAGGGCGCTGAAGTCTGTTTCTGGTGGGTATGTTCTTCG
GCCGTTCTTCTGTAACCGAGGGCTCTGGCTGGTGGGTGGTTGGTTGCAAATGTGTTTTTA
GAAAATCCTCAGTTCCTTGTCTTAGATGTTCTGTTGGAGAAGCTCTAGAGTTTCCACTGT
CCAGTAGAAACATGATGTGAGTCATATATGTGATTGACATTTTTTTAGTAGCCACATTTT
TTTAAAAAGTAGAAAGAATCAGGTGAGATTAAGGTTAATTATATCTTTTAAGCCAATATT
TTTCAAACATCAGCATTTCAATGTGTAATAAATCTAAAAATCAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12654621|gb|AAH01147.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12654621|gb|AAH01147.1|

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               37-156, - strand, RNAz p=0.833276
               

               
               231-438, - strand, RNAz p=0.917359
               

               
               237-396, - strand, RNAz p=0.98624
               

               
               437-596, + strand, RNAz p=0.857524

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               37-156, - strand, RNAz p=0.833276
               

               
               231-438, - strand, RNAz p=0.917359
               

               
               237-396, - strand, RNAz p=0.98624
               

               
               437-596, + strand, RNAz p=0.857524

Aligned organism(s): 22 entry(ies)

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Aligned organism(s): 22 entry(ies)

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               1-680, gnl|bosTau2|chr24 (22319259-22319941)
               


               
               2-171, gnl|bosTau2|chr13 (48238803-48238974)
               

               
               2-171, gnl|Hg17|chr20 (31771731-31771562)
               

               
               2-171, gnl|Mm7|chr2 (154344541-154344375)
               


               
               231-438, gnl|bosTau2|chr13 (48249528-48249735)
               

               
               231-438, gnl|canFam2|chr24 (25896064-25896222)
               

               
               231-438, gnl|danRer3|chrNA (124417215-124417057)
               

               
               231-438, gnl|fr1|chrUn (124314398-124314555)
               

               
               231-438, gnl|galGal2|chr20 (2053154-2052996)
               

               
               231-438, gnl|hg17|chr20 (31762019-31762177)
               

               
               231-438, gnl|Hg17|chr20 (31762224-31762017)
               

               
               231-438, gnl|mm7|chr2 (154333020-154333178)
               

               
               231-438, gnl|Mm7|chr2 (154333225-154333018)
               

               
               231-438, gnl|monDom2|scaffold_6 (13356253-13356095)
               

               
               231-438, gnl|oryCun1|scaffold_180104 (74481-74639)
               

               
               231-438, gnl|rheMac2|chr10 (30891416-30891258)
               

               
               231-438, gnl|rn3|chr3 (144973162-144973320)
               

               
               231-438, gnl|tetNig1|chr11 (7198717-7198874)
               

               
               231-438, gnl|xenTro1|scaffold_35 (1867257-1867099)
               


               
               725-1219, gnl|bosTau2|chr24 (22320015-22320527)
               

               
               725-1219, gnl|Hg17|chr20 (31759156-31758586)
               

               
               725-1219, gnl|Mm7|chr2 (154328631-154328148)

Aligned organism(s): 22 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-680, gnl|bosTau2|chr24 (22319259-22319941)
               


               
               2-171, gnl|bosTau2|chr13 (48238803-48238974)
               

               
               2-171, gnl|Hg17|chr20 (31771731-31771562)
               

               
               2-171, gnl|Mm7|chr2 (154344541-154344375)
               


               
               231-438, gnl|bosTau2|chr13 (48249528-48249735)
               

               
               231-438, gnl|canFam2|chr24 (25896064-25896222)
               

               
               231-438, gnl|danRer3|chrNA (124417215-124417057)
               

               
               231-438, gnl|fr1|chrUn (124314398-124314555)
               

               
               231-438, gnl|galGal2|chr20 (2053154-2052996)
               

               
               231-438, gnl|hg17|chr20 (31762019-31762177)
               

               
               231-438, gnl|Hg17|chr20 (31762224-31762017)
               

               
               231-438, gnl|mm7|chr2 (154333020-154333178)
               

               
               231-438, gnl|Mm7|chr2 (154333225-154333018)
               

               
               231-438, gnl|monDom2|scaffold_6 (13356253-13356095)
               

               
               231-438, gnl|oryCun1|scaffold_180104 (74481-74639)
               

               
               231-438, gnl|rheMac2|chr10 (30891416-30891258)
               

               
               231-438, gnl|rn3|chr3 (144973162-144973320)
               

               
               231-438, gnl|tetNig1|chr11 (7198717-7198874)
               

               
               231-438, gnl|xenTro1|scaffold_35 (1867257-1867099)
               


               
               725-1219, gnl|bosTau2|chr24 (22320015-22320527)
               

               
               725-1219, gnl|Hg17|chr20 (31759156-31758586)
               

               
               725-1219, gnl|Mm7|chr2 (154328631-154328148)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               sto (0.179824)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)

	37-156, - strand, RNAz p=0.833276
	231-438, - strand, RNAz p=0.917359
	237-396, - strand, RNAz p=0.98624
	437-596, + strand, RNAz p=0.857524

	1-680, gnl\|bosTau2\|chr24 (22319259-22319941)

	2-171, gnl\|bosTau2\|chr13 (48238803-48238974)
	2-171, gnl\|Hg17\|chr20 (31771731-31771562)
	2-171, gnl\|Mm7\|chr2 (154344541-154344375)

	231-438, gnl\|bosTau2\|chr13 (48249528-48249735)
	231-438, gnl\|canFam2\|chr24 (25896064-25896222)
	231-438, gnl\|danRer3\|chrNA (124417215-124417057)
	231-438, gnl\|fr1\|chrUn (124314398-124314555)
	231-438, gnl\|galGal2\|chr20 (2053154-2052996)
	231-438, gnl\|hg17\|chr20 (31762019-31762177)
	231-438, gnl\|Hg17\|chr20 (31762224-31762017)
	231-438, gnl\|mm7\|chr2 (154333020-154333178)
	231-438, gnl\|Mm7\|chr2 (154333225-154333018)
	231-438, gnl\|monDom2\|scaffold_6 (13356253-13356095)
	231-438, gnl\|oryCun1\|scaffold_180104 (74481-74639)
	231-438, gnl\|rheMac2\|chr10 (30891416-30891258)
	231-438, gnl\|rn3\|chr3 (144973162-144973320)
	231-438, gnl\|tetNig1\|chr11 (7198717-7198874)
	231-438, gnl\|xenTro1\|scaffold_35 (1867257-1867099)

	725-1219, gnl\|bosTau2\|chr24 (22320015-22320527)
	725-1219, gnl\|Hg17\|chr20 (31759156-31758586)
	725-1219, gnl\|Mm7\|chr2 (154328631-154328148)

	sto (0.179824)
	sin (0.174948)
	nco (0.161734)
	mga (0.160205)
	eli (0.151814)
	spl (0.143184)
	cly (0.120642)
	ecc (0.115035)