Non-Coding RNA Search

Ss1.1-Pig4-TMW8063A13.5

Sequence:


               
               GGCAGCACCTTTGCCTTCCATGGGTCCCACATTGAGGGAGGCTCGGTTCCGGACCGCCAA
GAAGCTCTATGGCAGCACCTTTGCCTTCCATGGGTCCCACATTGAGAACTGGCATTCGAT
CCTGCGCAATGGGCTGGTCAATGCATCCTACACCAAACTGCAGGAATGGGAAAAGGACAG
CACAGGATGCCCTCCAAGGATGAGCTGGTCCAGAGATATAACAGAATGAATACCATCCCC
CAGACCCGATCCATTCAGTCAAGGTTCCTGCAGAGTCGGAATCTAAACTGTATAGCACTT
TGTGAAGTGATTACATCCAAGGACCTCCAGAAGCATGGGAACATCTGGGTGTGCCCTGTC
TCTGACCATGTCTGCACACGGTTCTTCTTTGTATATGAGGATGGTCAGGTGGGCGATGCC
AACATTAATACTCAGGACCCCAAGATACAGAAGGAAATCATGCGTGTGATCGGAACTCAG
GTTTACACAAACTGAGGGGGCCCCAGCCCTCGTACCACCCCCATTCCCCCGGGATCCATC
CACCCTAACAAAAAGGGCTCAGGAGCAGCAGACAGGGCTGCCCTGAGGACAAGGGGCCAT
TATCAAGGGGCAGGAAAAGAATAAAAGCGGCGGCCTTCATGGTGGAAATTGACCCAGGAA
CTACTCCACATTTGGATGGCCCAGATTGACTCCCTACTCCTGATTGTCCCAGTTGACTTC
ACCCTGTTTGTAAATAAAACAATAAAATGGAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAGCACCTTTGCCTTCCATGGGTCCCACATTGAGGGAGGCTCGGTTCCGGACCGCCAA
GAAGCTCTATGGCAGCACCTTTGCCTTCCATGGGTCCCACATTGAGAACTGGCATTCGAT
CCTGCGCAATGGGCTGGTCAATGCATCCTACACCAAACTGCAGGAATGGGAAAAGGACAG
CACAGGATGCCCTCCAAGGATGAGCTGGTCCAGAGATATAACAGAATGAATACCATCCCC
CAGACCCGATCCATTCAGTCAAGGTTCCTGCAGAGTCGGAATCTAAACTGTATAGCACTT
TGTGAAGTGATTACATCCAAGGACCTCCAGAAGCATGGGAACATCTGGGTGTGCCCTGTC
TCTGACCATGTCTGCACACGGTTCTTCTTTGTATATGAGGATGGTCAGGTGGGCGATGCC
AACATTAATACTCAGGACCCCAAGATACAGAAGGAAATCATGCGTGTGATCGGAACTCAG
GTTTACACAAACTGAGGGGGCCCCAGCCCTCGTACCACCCCCATTCCCCCGGGATCCATC
CACCCTAACAAAAAGGGCTCAGGAGCAGCAGACAGGGCTGCCCTGAGGACAAGGGGCCAT
TATCAAGGGGCAGGAAAAGAATAAAAGCGGCGGCCTTCATGGTGGAAATTGACCCAGGAA
CTACTCCACATTTGGATGGCCCAGATTGACTCCCTACTCCTGATTGTCCCAGTTGACTTC
ACCCTGTTTGTAAATAAAACAATAAAATGGAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|20988802|gb|AAH30184.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|20988802|gb|AAH30184.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               472-667, - strand, RNAz p=0.998041
               

               
               619-752, + strand, RNAz p=0.979896

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               472-667, - strand, RNAz p=0.998041
               

               
               619-752, + strand, RNAz p=0.979896

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               393-752, gnl|bosTau2|chr10 (10622301-10621942)
               

               
               393-752, gnl|canFam2|chr30 (38743840-38744157)
               

               
               393-752, gnl|dasNov1|scaffold_776 (74384-74700)
               

               
               393-752, gnl|echTel1|scaffold_313239 (2990-3301)
               

               
               393-752, gnl|hg17|chr15 (70320523-70320840)
               

               
               393-752, gnl|Hg17|chr15 (70320952-70320592)
               

               
               393-752, gnl|mm7|chr9 (59677263-59676965)
               

               
               393-752, gnl|Mm7|chr9 (59676851-59677196)
               

               
               393-752, gnl|monDom2|scaffold_14 (16952063-16952403)
               

               
               393-752, gnl|panTro1|chr16 (70961075-70961392)
               

               
               393-752, gnl|rheMac2|chr7 (50889068-50889384)
               

               
               393-752, gnl|rn3|chr8 (63496860-63496592)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               393-752, gnl|bosTau2|chr10 (10622301-10621942)
               

               
               393-752, gnl|canFam2|chr30 (38743840-38744157)
               

               
               393-752, gnl|dasNov1|scaffold_776 (74384-74700)
               

               
               393-752, gnl|echTel1|scaffold_313239 (2990-3301)
               

               
               393-752, gnl|hg17|chr15 (70320523-70320840)
               

               
               393-752, gnl|Hg17|chr15 (70320952-70320592)
               

               
               393-752, gnl|mm7|chr9 (59677263-59676965)
               

               
               393-752, gnl|Mm7|chr9 (59676851-59677196)
               

               
               393-752, gnl|monDom2|scaffold_14 (16952063-16952403)
               

               
               393-752, gnl|panTro1|chr16 (70961075-70961392)
               

               
               393-752, gnl|rheMac2|chr7 (50889068-50889384)
               

               
               393-752, gnl|rn3|chr8 (63496860-63496592)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               amn (0.417711)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               cli (0.152812)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               cli (0.152812)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

	472-667, - strand, RNAz p=0.998041
	619-752, + strand, RNAz p=0.979896

	393-752, gnl\|bosTau2\|chr10 (10622301-10621942)
	393-752, gnl\|canFam2\|chr30 (38743840-38744157)
	393-752, gnl\|dasNov1\|scaffold_776 (74384-74700)
	393-752, gnl\|echTel1\|scaffold_313239 (2990-3301)
	393-752, gnl\|hg17\|chr15 (70320523-70320840)
	393-752, gnl\|Hg17\|chr15 (70320952-70320592)
	393-752, gnl\|mm7\|chr9 (59677263-59676965)
	393-752, gnl\|Mm7\|chr9 (59676851-59677196)
	393-752, gnl\|monDom2\|scaffold_14 (16952063-16952403)
	393-752, gnl\|panTro1\|chr16 (70961075-70961392)
	393-752, gnl\|rheMac2\|chr7 (50889068-50889384)
	393-752, gnl\|rn3\|chr8 (63496860-63496592)

	amn (0.417711)
	col (0.195008)
	nep (0.183925)
	cli (0.152812)
	pgl (0.118483)
	ebs (0.118301)
	ldo (0.0970026)