Non-Coding RNA Search

Ss1.1-Pig4-TMW8063A18.3

Sequence:


               
               AGAGTTGCACTGAGTGTGGCTGAAGCAGCGAGGCGGGAGTGGAGGTTCGCCGATTCAGGC
AGGCAGACAGGCACCGTCAGTTGGGGCGGACTGCAAATCTTATTTTCTTTTCCATTTTCT
CTCCCACGACCCGGAGCTAACGCCTGTGGCTCCCGGGCTGGTGTTTTGGGGAGTGCCGGG
AGATCCCCTTCTCCAGCCGCCCCCAGGCGGAGAGCCCCGCTGCGCGGGCGCTGCTGACAG
CTCGGAGAGCGGCCACTGTCCGCACGGGGAAGTCCGGAGACCAGCTGCAGCGGCGAGAAG
TTTCCCGGCAAGGAGGACAGGGGACAAGTGGCCGCCGGGTCCCGGAGCGAACTTTCGCAA
AGCTTCTCTCCGCCCGAAGCTGCCGCAGAGGCGGTAAAGAAAAGGAGGCGGTAGAGTGAG
GAGGACGTGCGCTCCGCTCCGCTCGCACCGGTTGCTGAACTTGGGCGAGCGCGACCCGCG
GCTGCCGGGCGCCCCCTCCCCCTCGCAGCGGAGGAGGGGACAGTCGTCGGAGTCCGGGCG
GCGGAGACCCGCCGCGGGCAGGCCACCGCGGGCTTTGCGCTGCCTGCCTCCGCCTGGAAG
CGAGTTCGTCCGCGGGCTCCGAGGAACCGCTGCTCCCGAGAGCTCTCCGTGAGTGACCGC
GACTTTTTCAAAGCCGGGAAGCGCGCGCGAGCGGACGAGTAAGAGTGCGGGCGGCGTCTC
AACCTTGCGATCCCCCGGAGCGAGCTGGTGAGGAGGGCGCAGGGGGGAGGCCAGCCGGCG
GGGGCGCGCGCTCTTAGAGAAACTTTCCTCGCTCACGGCCCCGGGAAGCGCGGGTGTCCC
CCGTTTGCCAGCGCGCTGTTGCGGCCCCGAAACTTCTGCGCGCAACCCAAACTCACCCCA
CGTGAAGTGACGGACTGTTCTATGACTGCAAAGATGGAAACGACCTTCTACGACGATGCC
CTCAACGCCTCGTTCCTCCAGTCCGAGAGCGGTGCCTACGGCTACAGTAACCCCAAGATC
CTGAAGCAGAGCATGACCCTGAACCTGGCTGACCCGGTGGGCAACCTGAAGCCGCACCTA
CGGGCCAAGAACTCCGACCTCCTCACCTCGCCCGACGTGGGGCTGCTCAAGCTGGCGTCG
CCCGAACTCGAGCGCCTGATAATCCAGTCCAGTAACGGGCACATCACCACCACGCCGACC
CCTACCCAGTTCCTATGCCCCAAGAACGTGACTGACGAGCAGGAGGGCTTCGCCGAGGGG
TTCGTGCGCGCGCTGGCCGAACTGCACAGCCAGAACACTCTGCCCAGCGTCACGTCGGCG
GCGCAGCCGGTCAGCGGGGCGGGCCTGGTGGCTCCGGCGGTAGCTTCAGTGGCGGGCGGC
AGCGGCAGCGGCGGCTTCAGCGCCAGCCTACACAGCGAGCCGCCAGTCTACGCTAATCTC
AGCAACTTCAACCCCGGCGCGCTGAGCAGCGGCGGCGGGGCGCCCTCCTACGGCGCGGCG
GGCCTGGCCTTTCCCGCTCAGCCCCAGCAGCAGCAACAGCAACCACCGCAGCCGCCGCAC
CACCTGCCCCAGCAGATCCCCGTGCAGCACCCGCGGCTGCAGGCCCTGAAGGAGGAGCCG
CAGACGGTGCCCGAGATGCCCGGGGAAACCCCGCCCCTGTCTCCCATCGACATGGAGTCG
CAGGAGCGGATCAAGGCGGAGAGGAAGCGCATGAGGAACCGCATCGCTGCCTCCAAGTGC
CGGAAAAGGAAGCTGGAGAGGATCGCCCGGCTGGAGGAAAAAGTGAAAACCTTGAAAGCG
CAGAACTCGGAGCTGGCGTCCACCGCCAACATGCTCAGGGAACAGGTGGCCCAGCTTAAA
CAAAAAGTCATGAACCACGTTAACAGTGGGTGCCAACTCATGCTAACGCAGCAGTTGCAA
ACGTTTTGAGGCGAGACTGTTGGGGGCTGAGGGGCAATGGAGAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGTTGCACTGAGTGTGGCTGAAGCAGCGAGGCGGGAGTGGAGGTTCGCCGATTCAGGC
AGGCAGACAGGCACCGTCAGTTGGGGCGGACTGCAAATCTTATTTTCTTTTCCATTTTCT
CTCCCACGACCCGGAGCTAACGCCTGTGGCTCCCGGGCTGGTGTTTTGGGGAGTGCCGGG
AGATCCCCTTCTCCAGCCGCCCCCAGGCGGAGAGCCCCGCTGCGCGGGCGCTGCTGACAG
CTCGGAGAGCGGCCACTGTCCGCACGGGGAAGTCCGGAGACCAGCTGCAGCGGCGAGAAG
TTTCCCGGCAAGGAGGACAGGGGACAAGTGGCCGCCGGGTCCCGGAGCGAACTTTCGCAA
AGCTTCTCTCCGCCCGAAGCTGCCGCAGAGGCGGTAAAGAAAAGGAGGCGGTAGAGTGAG
GAGGACGTGCGCTCCGCTCCGCTCGCACCGGTTGCTGAACTTGGGCGAGCGCGACCCGCG
GCTGCCGGGCGCCCCCTCCCCCTCGCAGCGGAGGAGGGGACAGTCGTCGGAGTCCGGGCG
GCGGAGACCCGCCGCGGGCAGGCCACCGCGGGCTTTGCGCTGCCTGCCTCCGCCTGGAAG
CGAGTTCGTCCGCGGGCTCCGAGGAACCGCTGCTCCCGAGAGCTCTCCGTGAGTGACCGC
GACTTTTTCAAAGCCGGGAAGCGCGCGCGAGCGGACGAGTAAGAGTGCGGGCGGCGTCTC
AACCTTGCGATCCCCCGGAGCGAGCTGGTGAGGAGGGCGCAGGGGGGAGGCCAGCCGGCG
GGGGCGCGCGCTCTTAGAGAAACTTTCCTCGCTCACGGCCCCGGGAAGCGCGGGTGTCCC
CCGTTTGCCAGCGCGCTGTTGCGGCCCCGAAACTTCTGCGCGCAACCCAAACTCACCCCA
CGTGAAGTGACGGACTGTTCTATGACTGCAAAGATGGAAACGACCTTCTACGACGATGCC
CTCAACGCCTCGTTCCTCCAGTCCGAGAGCGGTGCCTACGGCTACAGTAACCCCAAGATC
CTGAAGCAGAGCATGACCCTGAACCTGGCTGACCCGGTGGGCAACCTGAAGCCGCACCTA
CGGGCCAAGAACTCCGACCTCCTCACCTCGCCCGACGTGGGGCTGCTCAAGCTGGCGTCG
CCCGAACTCGAGCGCCTGATAATCCAGTCCAGTAACGGGCACATCACCACCACGCCGACC
CCTACCCAGTTCCTATGCCCCAAGAACGTGACTGACGAGCAGGAGGGCTTCGCCGAGGGG
TTCGTGCGCGCGCTGGCCGAACTGCACAGCCAGAACACTCTGCCCAGCGTCACGTCGGCG
GCGCAGCCGGTCAGCGGGGCGGGCCTGGTGGCTCCGGCGGTAGCTTCAGTGGCGGGCGGC
AGCGGCAGCGGCGGCTTCAGCGCCAGCCTACACAGCGAGCCGCCAGTCTACGCTAATCTC
AGCAACTTCAACCCCGGCGCGCTGAGCAGCGGCGGCGGGGCGCCCTCCTACGGCGCGGCG
GGCCTGGCCTTTCCCGCTCAGCCCCAGCAGCAGCAACAGCAACCACCGCAGCCGCCGCAC
CACCTGCCCCAGCAGATCCCCGTGCAGCACCCGCGGCTGCAGGCCCTGAAGGAGGAGCCG
CAGACGGTGCCCGAGATGCCCGGGGAAACCCCGCCCCTGTCTCCCATCGACATGGAGTCG
CAGGAGCGGATCAAGGCGGAGAGGAAGCGCATGAGGAACCGCATCGCTGCCTCCAAGTGC
CGGAAAAGGAAGCTGGAGAGGATCGCCCGGCTGGAGGAAAAAGTGAAAACCTTGAAAGCG
CAGAACTCGGAGCTGGCGTCCACCGCCAACATGCTCAGGGAACAGGTGGCCCAGCTTAAA
CAAAAAGTCATGAACCACGTTAACAGTGGGTGCCAACTCATGCTAACGCAGCAGTTGCAA
ACGTTTTGAGGCGAGACTGTTGGGGGCTGAGGGGCAATGGAGAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               AP1_PIG

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               AP1_PIG

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

Help | Less info


               
               103-222, + strand, RNAz p=0.556923
               

               
               1207-1326, - strand, RNAz p=0.839765
               

               
               1487-1606, - strand, RNAz p=0.658631
               

               
               1807-1926, - strand, RNAz p=0.984331

Predicted RNA structure(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               103-222, + strand, RNAz p=0.556923
               

               
               1207-1326, - strand, RNAz p=0.839765
               

               
               1487-1606, - strand, RNAz p=0.658631
               

               
               1807-1926, - strand, RNAz p=0.984331

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               1-1968, gnl|bosTau2|chr3 (65482426-65484393)
               

               
               1-1968, gnl|Hg17|chr1 (58961736-58959729)
               

               
               1-1968, gnl|Mm7|chr4 (94444802-94442835)
               


               
               1099-1515, gnl|bosTau2|chr19 (51058213-51058616)
               

               
               1099-1515, gnl|Hg17|chr19 (18253036-18252627)
               

               
               1099-1515, gnl|Mm7|chr8 (69153377-69153756)
               


               
               1558-1930, gnl|bosTau2|chr19 (51058616-51058993)
               

               
               1558-1930, gnl|Hg17|chr19 (18252627-18252250)
               

               
               1558-1930, gnl|Mm7|chr8 (69153756-69154145)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1968, gnl|bosTau2|chr3 (65482426-65484393)
               

               
               1-1968, gnl|Hg17|chr1 (58961736-58959729)
               

               
               1-1968, gnl|Mm7|chr4 (94444802-94442835)
               


               
               1099-1515, gnl|bosTau2|chr19 (51058213-51058616)
               

               
               1099-1515, gnl|Hg17|chr19 (18253036-18252627)
               

               
               1099-1515, gnl|Mm7|chr8 (69153377-69153756)
               


               
               1558-1930, gnl|bosTau2|chr19 (51058616-51058993)
               

               
               1558-1930, gnl|Hg17|chr19 (18252627-18252250)
               

               
               1558-1930, gnl|Mm7|chr8 (69153756-69154145)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

Help | Less info


               
               pla (0.802032)
               

               
               amn (0.417711)
               

               
               eje (0.395335)
               

               
               hlv (0.278513)
               

               
               eep (0.245128)
               

               
               ebs (0.236602)
               

               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               lyg (0.133103)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.802032)
               

               
               amn (0.417711)
               

               
               eje (0.395335)
               

               
               hlv (0.278513)
               

               
               eep (0.245128)
               

               
               ebs (0.236602)
               

               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               lyg (0.133103)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	103-222, + strand, RNAz p=0.556923
	1207-1326, - strand, RNAz p=0.839765
	1487-1606, - strand, RNAz p=0.658631
	1807-1926, - strand, RNAz p=0.984331

	1-1968, gnl\|bosTau2\|chr3 (65482426-65484393)
	1-1968, gnl\|Hg17\|chr1 (58961736-58959729)
	1-1968, gnl\|Mm7\|chr4 (94444802-94442835)

	1099-1515, gnl\|bosTau2\|chr19 (51058213-51058616)
	1099-1515, gnl\|Hg17\|chr19 (18253036-18252627)
	1099-1515, gnl\|Mm7\|chr8 (69153377-69153756)

	1558-1930, gnl\|bosTau2\|chr19 (51058616-51058993)
	1558-1930, gnl\|Hg17\|chr19 (18252627-18252250)
	1558-1930, gnl\|Mm7\|chr8 (69153756-69154145)

	pla (0.802032)
	amn (0.417711)
	eje (0.395335)
	hlv (0.278513)
	eep (0.245128)
	ebs (0.236602)
	med (0.232504)
	ece (0.229305)
	nlu (0.191681)
	mcp (0.170648)
	cut (0.169924)
	nco (0.161734)
	lyg (0.133103)
	eru (0.120048)
	jca (0.11396)
	jej (0.0989218)