Ss1.1-Pig4-TMW8063A24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGCGCGCCCTGCGAGCTGGATGTCTGGTCTGCGGGCGCTGCTCGGGCTCGGGCTGCTCG TTGCGGGCTCGCGCCTGCCGCGCGTCAGAGTCCAGGCCGGCGCCTGTCGCGCGCGACCCA CCTGGTGGGGGCCGCAGCGGCTGATCTCGGGTGGCCGCGGGGACGTAGAAGGCATGGCGA GCTCAGCGGTGAAGTACCTCAGCCAGGAGGAGGCCCAGGCTGTGGACCAGGAGCTGTTTA ACGAGTACCAGTTCAGCGTGGACCAACTAATGGAGCTGGCCGGGCTGAGCTGTGCTACAG CCATTGCCAAGGCCTATCCTCCCACGTCCTTGTCCAGGAGCCCCCCTACTGTCCTAGTCA TTTGTGGCCCCGGGAATAACGGAGGAGATGGCCTGGTCTGTGCTCGACACCTCAAACTCT TTGGCTACCAACCAACCATCTATTACCCTAAAAGGCCTAACAAGCCACTCTTCACTGCGC TGGTAACCCAGTGCCAGAAAATGGACATCCCTTTCCTTGATGAAATGCCCTCAGAGCCCA CGCTGATCGATGAACTATATGAGCTGGTGGTGGATGCCATCTTTGGCTTCAGCTTCAAGG GTGAAGTTCGGGAGCCATTCCGCAGCATCCTGAGTGTCCTGAATGGACTCACTGTGCCCA TTGCCAGCATCGACATTCCCTCAGGATGGGATGTAGAGAGAGGAAACTCTGGAGGGATCC AGCCGGACTTGCTCATCTCCCTGACAGCACCCAAAAAGTCTGCAGCCCAGTTTACTGGTC GCTACCACTACCTGGGGGGTCGTTTCGTGCCACCTGCTCTGGAAAAGAAGTACCAGCTGA ACCTGCCACCCTATCCTGACACTGAGTGTGTCTACCGCCTGCAGTGAGGGAAGCAGGGCG GGCATTCTTCACAATAAAGACTTAGTGCCTCTGTGCCCCAGAACTGTGGCATCCTGGGAG CTCTTCTGACAATAAGGGTTAATGGAGAGCAGAAGCAGAGAGCAACAGTGGAGATGCAGT GCCATCTCTCTGGGGGACAGACCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGCGCGCCCTGCGAGCTGGATGTCTGGTCTGCGGGCGCTGCTCGGGCTCGGGCTGCTCG TTGCGGGCTCGCGCCTGCCGCGCGTCAGAGTCCAGGCCGGCGCCTGTCGCGCGCGACCCA CCTGGTGGGGGCCGCAGCGGCTGATCTCGGGTGGCCGCGGGGACGTAGAAGGCATGGCGA GCTCAGCGGTGAAGTACCTCAGCCAGGAGGAGGCCCAGGCTGTGGACCAGGAGCTGTTTA ACGAGTACCAGTTCAGCGTGGACCAACTAATGGAGCTGGCCGGGCTGAGCTGTGCTACAG CCATTGCCAAGGCCTATCCTCCCACGTCCTTGTCCAGGAGCCCCCCTACTGTCCTAGTCA TTTGTGGCCCCGGGAATAACGGAGGAGATGGCCTGGTCTGTGCTCGACACCTCAAACTCT TTGGCTACCAACCAACCATCTATTACCCTAAAAGGCCTAACAAGCCACTCTTCACTGCGC TGGTAACCCAGTGCCAGAAAATGGACATCCCTTTCCTTGATGAAATGCCCTCAGAGCCCA CGCTGATCGATGAACTATATGAGCTGGTGGTGGATGCCATCTTTGGCTTCAGCTTCAAGG GTGAAGTTCGGGAGCCATTCCGCAGCATCCTGAGTGTCCTGAATGGACTCACTGTGCCCA TTGCCAGCATCGACATTCCCTCAGGATGGGATGTAGAGAGAGGAAACTCTGGAGGGATCC AGCCGGACTTGCTCATCTCCCTGACAGCACCCAAAAAGTCTGCAGCCCAGTTTACTGGTC GCTACCACTACCTGGGGGGTCGTTTCGTGCCACCTGCTCTGGAAAAGAAGTACCAGCTGA ACCTGCCACCCTATCCTGACACTGAGTGTGTCTACCGCCTGCAGTGAGGGAAGCAGGGCG GGCATTCTTCACAATAAAGACTTAGTGCCTCTGTGCCCCAGAACTGTGGCATCCTGGGAG CTCTTCTGACAATAAGGGTTAATGGAGAGCAGAAGCAGAGAGCAACAGTGGAGATGCAGT GCCATCTCTCTGGGGGACAGACCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 840-959, - strand, RNAz p=0.796587 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 840-959, - strand, RNAz p=0.796587 |
| Aligned organism(s): 83 entry(ies) | More info |
| Aligned organism(s): 83 entry(ies) | Help | Less info |
| 1-207, gnl|bosTau2|chr3 (10911849-10912055) | |
| 1-207, gnl|canFam2|chr7 (44338806-44338587) | |
| 1-207, gnl|echTel1|scaffold_305981 (9197-9424) | |
| 1-207, gnl|Hg17|chr1 (153374650-153374856) | |
| 1-207, gnl|hg17|chr5 (177525259-177525487) | |
| 1-207, gnl|mm7|chr3 (88172359-88172131) | |
| 1-207, gnl|Mm7|chr3 (88172307-88172122) | |
| 1-207, gnl|monDom2|scaffold_59 (840041-839819) | |
| 1-207, gnl|panTro1|chr4 (185025400-185025626) | |
| 1-207, gnl|rheMac2|chr6 (174735316-174735546) | |
| 1-207, gnl|rn3|chr2 (180084699-180084481) | |
| 310-423, gnl|bosTau2|chr3 (10912442-10912555) | |
| 310-423, gnl|canFam2|chr7 (44338301-44338155) | |
| 310-423, gnl|canFam2|chr7 (44338288-44338181) | |
| 310-423, gnl|canFam2|chr7 (44338288-44338186) | |
| 310-423, gnl|echTel1|scaffold_318618 (5100-5207) | |
| 310-423, gnl|echTel1|scaffold_318618 (5100-5207) | |
| 310-423, gnl|echTel1|scaffold_318618 (5100-5202) | |
| 310-423, gnl|fr1|chrUn (71237039-71236915) | |
| 310-423, gnl|fr1|chrUn (71237028-71236921) | |
| 310-423, gnl|fr1|chrUn (71237028-71236926) | |
| 310-423, gnl|galGal2|chrUn (159869209-159869300) | |
| 310-423, gnl|hg17|chr1 (153375222-153375367) | |
| 310-423, gnl|Hg17|chr1 (153375228-153375341) | |
| 310-423, gnl|hg17|chr19 (18012344-18012432) | |
| 310-423, gnl|hg17|chr5 (177525602-177525704) | |
| 310-423, gnl|loxAfr1|scaffold_95942 (5381-5526) | |
| 310-423, gnl|loxAfr1|scaffold_95942 (5393-5500) | |
| 310-423, gnl|loxAfr1|scaffold_95942 (5393-5495) | |
| 310-423, gnl|mm7|chr3 (88171842-88171696) | |
| 310-423, gnl|mm7|chr3 (88171830-88171723) | |
| 310-423, gnl|mm7|chr3 (88171830-88171728) | |
| 310-423, gnl|Mm7|chr3 (88171834-88171721) | |
| 310-423, gnl|monDom2|scaffold_59 (839190-839037) | |
| 310-423, gnl|monDom2|scaffold_59 (839178-839076) | |
| 310-423, gnl|panTro1|chr1 (135337018-135337163) | |
| 310-423, gnl|panTro1|chr20 (19003988-19004076) | |
| 310-423, gnl|panTro1|chr4 (185025741-185025843) | |
| 310-423, gnl|rheMac2|chr1 (135199649-135199794) | |
| 310-423, gnl|rheMac2|chr19 (17613182-17613289) | |
| 310-423, gnl|rheMac2|chr6 (174735661-174735761) | |
| 310-423, gnl|rn3|chr2 (180084187-180084042) | |
| 310-423, gnl|rn3|chr2 (180084175-180084068) | |
| 310-423, gnl|rn3|chr2 (180084175-180084073) | |
| 310-423, gnl|tetNig1|chrUn_random (83312355-83312226) | |
| 310-423, gnl|tetNig1|chrUn_random (83312344-83312237) | |
| 310-423, gnl|tetNig1|chrUn_random (83312344-83312242) | |
| 310-423, gnl|xenTro1|scaffold_433 (414293-414418) | |
| 310-423, gnl|xenTro1|scaffold_433 (414318-414407) | |
| 681-1037, gnl|bosTau2|chr3 (10913972-10914325) | |
| 681-1037, gnl|canFam2|chr7 (44336583-44336356) | |
| 681-1037, gnl|canFam2|chr7 (44336569-44336356) | |
| 681-1037, gnl|danRer3|chr22 (24977745-24977548) | |
| 681-1037, gnl|dasNov1|scaffold_9625 (32510-32738) | |
| 681-1037, gnl|dasNov1|scaffold_9625 (32524-32738) | |
| 681-1037, gnl|echTel1|scaffold_305981 (11139-11367) | |
| 681-1037, gnl|echTel1|scaffold_318618 (5471-5685) | |
| 681-1037, gnl|fr1|chrUn (71235870-71235649) | |
| 681-1037, gnl|fr1|chrUn (71235864-71235649) | |
| 681-1037, gnl|galGal2|chrUn (159869621-159869839) | |
| 681-1037, gnl|galGal2|chrUn (159869635-159869839) | |
| 681-1037, gnl|hg17|chr1 (153376735-153376963) | |
| 681-1037, gnl|Hg17|chr1 (153376743-153377101) | |
| 681-1037, gnl|hg17|chr5 (177525970-177526183) | |
| 681-1037, gnl|loxAfr1|scaffold_155622 (956-728) | |
| 681-1037, gnl|loxAfr1|scaffold_155622 (942-728) | |
| 681-1037, gnl|mm7|chr3 (88170593-88170364) | |
| 681-1037, gnl|mm7|chr3 (88170577-88170364) | |
| 681-1037, gnl|Mm7|chr3 (88170581-88170268) | |
| 681-1037, gnl|monDom2|scaffold_59 (837825-837597) | |
| 681-1037, gnl|monDom2|scaffold_59 (837811-837597) | |
| 681-1037, gnl|oryCun1|scaffold_174911 (35950-36178) | |
| 681-1037, gnl|oryCun1|scaffold_174911 (35966-36178) | |
| 681-1037, gnl|panTro1|chr1 (135338531-135338759) | |
| 681-1037, gnl|panTro1|chr4 (185026109-185026323) | |
| 681-1037, gnl|rheMac2|chr1 (135201162-135201390) | |
| 681-1037, gnl|rheMac2|chr6 (174736027-174736231) | |
| 681-1037, gnl|rn3|chr2 (180082880-180082651) | |
| 681-1037, gnl|rn3|chr2 (180082864-180082651) | |
| 681-1037, gnl|tetNig1|chrUn_random (83311555-83311359) | |
| 681-1037, gnl|tetNig1|chrUn_random (83311547-83311358) | |
| 681-1037, gnl|xenTro1|scaffold_433 (415640-415862) | |
| 681-1037, gnl|xenTro1|scaffold_433 (415648-415862) |
| Aligned organism(s): 83 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-207, gnl|bosTau2|chr3 (10911849-10912055) | |
| 1-207, gnl|canFam2|chr7 (44338806-44338587) | |
| 1-207, gnl|echTel1|scaffold_305981 (9197-9424) | |
| 1-207, gnl|Hg17|chr1 (153374650-153374856) | |
| 1-207, gnl|hg17|chr5 (177525259-177525487) | |
| 1-207, gnl|mm7|chr3 (88172359-88172131) | |
| 1-207, gnl|Mm7|chr3 (88172307-88172122) | |
| 1-207, gnl|monDom2|scaffold_59 (840041-839819) | |
| 1-207, gnl|panTro1|chr4 (185025400-185025626) | |
| 1-207, gnl|rheMac2|chr6 (174735316-174735546) | |
| 1-207, gnl|rn3|chr2 (180084699-180084481) | |
| 310-423, gnl|bosTau2|chr3 (10912442-10912555) | |
| 310-423, gnl|canFam2|chr7 (44338301-44338155) | |
| 310-423, gnl|canFam2|chr7 (44338288-44338181) | |
| 310-423, gnl|canFam2|chr7 (44338288-44338186) | |
| 310-423, gnl|echTel1|scaffold_318618 (5100-5207) | |
| 310-423, gnl|echTel1|scaffold_318618 (5100-5207) | |
| 310-423, gnl|echTel1|scaffold_318618 (5100-5202) | |
| 310-423, gnl|fr1|chrUn (71237039-71236915) | |
| 310-423, gnl|fr1|chrUn (71237028-71236921) | |
| 310-423, gnl|fr1|chrUn (71237028-71236926) | |
| 310-423, gnl|galGal2|chrUn (159869209-159869300) | |
| 310-423, gnl|hg17|chr1 (153375222-153375367) | |
| 310-423, gnl|Hg17|chr1 (153375228-153375341) | |
| 310-423, gnl|hg17|chr19 (18012344-18012432) | |
| 310-423, gnl|hg17|chr5 (177525602-177525704) | |
| 310-423, gnl|loxAfr1|scaffold_95942 (5381-5526) | |
| 310-423, gnl|loxAfr1|scaffold_95942 (5393-5500) | |
| 310-423, gnl|loxAfr1|scaffold_95942 (5393-5495) | |
| 310-423, gnl|mm7|chr3 (88171842-88171696) | |
| 310-423, gnl|mm7|chr3 (88171830-88171723) | |
| 310-423, gnl|mm7|chr3 (88171830-88171728) | |
| 310-423, gnl|Mm7|chr3 (88171834-88171721) | |
| 310-423, gnl|monDom2|scaffold_59 (839190-839037) | |
| 310-423, gnl|monDom2|scaffold_59 (839178-839076) | |
| 310-423, gnl|panTro1|chr1 (135337018-135337163) | |
| 310-423, gnl|panTro1|chr20 (19003988-19004076) | |
| 310-423, gnl|panTro1|chr4 (185025741-185025843) | |
| 310-423, gnl|rheMac2|chr1 (135199649-135199794) | |
| 310-423, gnl|rheMac2|chr19 (17613182-17613289) | |
| 310-423, gnl|rheMac2|chr6 (174735661-174735761) | |
| 310-423, gnl|rn3|chr2 (180084187-180084042) | |
| 310-423, gnl|rn3|chr2 (180084175-180084068) | |
| 310-423, gnl|rn3|chr2 (180084175-180084073) | |
| 310-423, gnl|tetNig1|chrUn_random (83312355-83312226) | |
| 310-423, gnl|tetNig1|chrUn_random (83312344-83312237) | |
| 310-423, gnl|tetNig1|chrUn_random (83312344-83312242) | |
| 310-423, gnl|xenTro1|scaffold_433 (414293-414418) | |
| 310-423, gnl|xenTro1|scaffold_433 (414318-414407) | |
| 681-1037, gnl|bosTau2|chr3 (10913972-10914325) | |
| 681-1037, gnl|canFam2|chr7 (44336583-44336356) | |
| 681-1037, gnl|canFam2|chr7 (44336569-44336356) | |
| 681-1037, gnl|danRer3|chr22 (24977745-24977548) | |
| 681-1037, gnl|dasNov1|scaffold_9625 (32510-32738) | |
| 681-1037, gnl|dasNov1|scaffold_9625 (32524-32738) | |
| 681-1037, gnl|echTel1|scaffold_305981 (11139-11367) | |
| 681-1037, gnl|echTel1|scaffold_318618 (5471-5685) | |
| 681-1037, gnl|fr1|chrUn (71235870-71235649) | |
| 681-1037, gnl|fr1|chrUn (71235864-71235649) | |
| 681-1037, gnl|galGal2|chrUn (159869621-159869839) | |
| 681-1037, gnl|galGal2|chrUn (159869635-159869839) | |
| 681-1037, gnl|hg17|chr1 (153376735-153376963) | |
| 681-1037, gnl|Hg17|chr1 (153376743-153377101) | |
| 681-1037, gnl|hg17|chr5 (177525970-177526183) | |
| 681-1037, gnl|loxAfr1|scaffold_155622 (956-728) | |
| 681-1037, gnl|loxAfr1|scaffold_155622 (942-728) | |
| 681-1037, gnl|mm7|chr3 (88170593-88170364) | |
| 681-1037, gnl|mm7|chr3 (88170577-88170364) | |
| 681-1037, gnl|Mm7|chr3 (88170581-88170268) | |
| 681-1037, gnl|monDom2|scaffold_59 (837825-837597) | |
| 681-1037, gnl|monDom2|scaffold_59 (837811-837597) | |
| 681-1037, gnl|oryCun1|scaffold_174911 (35950-36178) | |
| 681-1037, gnl|oryCun1|scaffold_174911 (35966-36178) | |
| 681-1037, gnl|panTro1|chr1 (135338531-135338759) | |
| 681-1037, gnl|panTro1|chr4 (185026109-185026323) | |
| 681-1037, gnl|rheMac2|chr1 (135201162-135201390) | |
| 681-1037, gnl|rheMac2|chr6 (174736027-174736231) | |
| 681-1037, gnl|rn3|chr2 (180082880-180082651) | |
| 681-1037, gnl|rn3|chr2 (180082864-180082651) | |
| 681-1037, gnl|tetNig1|chrUn_random (83311555-83311359) | |
| 681-1037, gnl|tetNig1|chrUn_random (83311547-83311358) | |
| 681-1037, gnl|xenTro1|scaffold_433 (415640-415862) | |
| 681-1037, gnl|xenTro1|scaffold_433 (415648-415862) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| hea (0.408998) | |
| cly (0.361925) | |
| cli (0.305623) | |
| fce (0.271592) | |
| ebs (0.236602) | |
| jca (0.22792) | |
| nms (0.213858) | |
| mas (0.210305) | |
| col (0.195008) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| mcp (0.170648) | |
| ctl (0.153069) | |
| cag (0.151194) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| che (0.136314) | |
| cov (0.132153) | |
| eep (0.122564) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (0.408998) | |
| cly (0.361925) | |
| cli (0.305623) | |
| fce (0.271592) | |
| ebs (0.236602) | |
| jca (0.22792) | |
| nms (0.213858) | |
| mas (0.210305) | |
| col (0.195008) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| mcp (0.170648) | |
| ctl (0.153069) | |
| cag (0.151194) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| che (0.136314) | |
| cov (0.132153) | |
| eep (0.122564) | |
| nbm (0.0993246) | |
| jej (0.0989218) |