Non-Coding RNA Search

Ss1.1-Pig4-TMW8063B03.3

Sequence:


               
               AATGAATTATGTCTTTTTCAAGACTTCGACTCAGATGTGTGCTTCATTGTGTGAGAGGAA
GTGACGCTGGACCTTGTGTATACAGAAAAAAGGCTGTATAGGAAGACAGGTCTGTGTTGG
GTAGGGTGACATCTGCTTGACGCCTGCCCAGCGCCTGTGCCTGCCTCTGTGCCGGGCTTC
AGAGTAGGTGTTTACATAAAACATTTGTTTGAAATAAAAAGGACAGGCACCTAAAAACTG
AAGGTTCTAGAGAGGAGATGGTTTTTTAATTCTTATTATCTGATTAGGCGGTGTGTTTTA
GACTTTTAGTGTGTACCTTGTTTAAAACTTTAACAATAATAGCACATTTCGCGTGGAATC
CCCCATCCGGAAGAACTGGCTGCCCCTCTGCATTGCACCCGTGTAGGTAGCGTTTCGTCA
CTAGATTGTAAGCTCCTCAAGGGCAGGAAGTGTCTCTCTGTCTCACCTCGGCGGTTCCTG
CAGCATCTGATGTCAAGTGCCTTGCACAGAGTAGGTGCTCGTGACGCAGAGGACGAGTGA
GGGACGTCCTGCCACCTCTAAGATGAGCGTGTTCAAAACTGCCGGCACCAAGGGCGGGAA
GAGGGCGCAGCTCTTTGCTGGGCGTGACCTGGGCCTCCTGGGTTGAAGCACCTGCTCAGC
ACAGTTCTCCTCTTCCCTGAAGAGAAACCCGTGTCCCAAGCTTCCTTCTGATACTGGGGC
AGTTTGAAGTGGGAAAGGTTAGAGAGGAGATGAAGTGGGAATTTTGGAGAGTGTTTGTCA
GATGCAGCCCTCCGGGGCAGTCCTTAAGGAACAGGTAGCAGGTCCTCTTTCTTTACAGGT
AGCTGGTTGGCCAGTTTTTCAGTTTATAAGCGATCCCTGCTTTTTCCAGTCTGGATTCCC
CTCAATTGCTCTTAGGATTCTCGTACTTAGAGTCTATTGAAGTTGCTGTGATTATCCAGT
GCTGTACATAAGGGCCATTTTGTACATGTGAAATAACCTCAATTATGTTGTGTTTTGTAT
GCAGAGCCAATAGTATTGTTATCTTGGCCACTTTTTTATTCAAAAATAAATAAATAACCG
AATTATTTATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGAATTATGTCTTTTTCAAGACTTCGACTCAGATGTGTGCTTCATTGTGTGAGAGGAA
GTGACGCTGGACCTTGTGTATACAGAAAAAAGGCTGTATAGGAAGACAGGTCTGTGTTGG
GTAGGGTGACATCTGCTTGACGCCTGCCCAGCGCCTGTGCCTGCCTCTGTGCCGGGCTTC
AGAGTAGGTGTTTACATAAAACATTTGTTTGAAATAAAAAGGACAGGCACCTAAAAACTG
AAGGTTCTAGAGAGGAGATGGTTTTTTAATTCTTATTATCTGATTAGGCGGTGTGTTTTA
GACTTTTAGTGTGTACCTTGTTTAAAACTTTAACAATAATAGCACATTTCGCGTGGAATC
CCCCATCCGGAAGAACTGGCTGCCCCTCTGCATTGCACCCGTGTAGGTAGCGTTTCGTCA
CTAGATTGTAAGCTCCTCAAGGGCAGGAAGTGTCTCTCTGTCTCACCTCGGCGGTTCCTG
CAGCATCTGATGTCAAGTGCCTTGCACAGAGTAGGTGCTCGTGACGCAGAGGACGAGTGA
GGGACGTCCTGCCACCTCTAAGATGAGCGTGTTCAAAACTGCCGGCACCAAGGGCGGGAA
GAGGGCGCAGCTCTTTGCTGGGCGTGACCTGGGCCTCCTGGGTTGAAGCACCTGCTCAGC
ACAGTTCTCCTCTTCCCTGAAGAGAAACCCGTGTCCCAAGCTTCCTTCTGATACTGGGGC
AGTTTGAAGTGGGAAAGGTTAGAGAGGAGATGAAGTGGGAATTTTGGAGAGTGTTTGTCA
GATGCAGCCCTCCGGGGCAGTCCTTAAGGAACAGGTAGCAGGTCCTCTTTCTTTACAGGT
AGCTGGTTGGCCAGTTTTTCAGTTTATAAGCGATCCCTGCTTTTTCCAGTCTGGATTCCC
CTCAATTGCTCTTAGGATTCTCGTACTTAGAGTCTATTGAAGTTGCTGTGATTATCCAGT
GCTGTACATAAGGGCCATTTTGTACATGTGAAATAACCTCAATTATGTTGTGTTTTGTAT
GCAGAGCCAATAGTATTGTTATCTTGGCCACTTTTTTATTCAAAAATAAATAAATAACCG
AATTATTTATAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               114-229, - strand, RNAz p=0.978986
               

               
               423-542, + strand, RNAz p=0.940806

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               114-229, - strand, RNAz p=0.978986
               

               
               423-542, + strand, RNAz p=0.940806

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-566, gnl|bosTau2|chr11 (83280605-83281152)
               

               
               1-566, gnl|Hg17|chr9 (132598739-132599295)
               


               
               881-1091, gnl|bosTau2|chr11 (83281547-83281761)
               

               
               881-1091, gnl|Hg17|chr9 (132599689-132599894)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-566, gnl|bosTau2|chr11 (83280605-83281152)
               

               
               1-566, gnl|Hg17|chr9 (132598739-132599295)
               


               
               881-1091, gnl|bosTau2|chr11 (83281547-83281761)
               

               
               881-1091, gnl|Hg17|chr9 (132599689-132599894)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ebs (0.236602)
               

               
               fcc (0.197785)
               

               
               nca (0.136874)
               

               
               cbl (0.114797)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)
               

               
               fcc (0.197785)
               

               
               nca (0.136874)
               

               
               cbl (0.114797)

	114-229, - strand, RNAz p=0.978986
	423-542, + strand, RNAz p=0.940806

	1-566, gnl\|bosTau2\|chr11 (83280605-83281152)
	1-566, gnl\|Hg17\|chr9 (132598739-132599295)

	881-1091, gnl\|bosTau2\|chr11 (83281547-83281761)
	881-1091, gnl\|Hg17\|chr9 (132599689-132599894)