Non-Coding RNA Search

Ss1.1-Pig4-TMW8063B09.5

Sequence:


               
               TCCACCAAAGTTTGCAGTAATATTCTCTCCTGAAGGTGCATTCGGGCTCCTTTAAATTAG
TCAGTGTTATAGGAGACTGTCATGGAAAAGGACTCAGTTTACTTTTGCCATTTTCACAGG
GGAACCTTTTAAAACAATCTCTTCAGCAGCAGACACCTTTAACCCTAATAATCTCAGGCC
TTGATGAAAATACTATATTTTGTAGATTATGGTTAAAGGGAGAAAATTATTAGTTCTGTA
AGATAAATGTGAGCTCCATTAACTTCTGATATCTGGTTTAGCATTACATAATGTGTTGAT
CTTATGCTCTGCTTTTGTCCAAATAAGATGCAATAGTATCAATATCAATTTCTGAATGAT
GGACCGAATATGCTTTTTTGATGAAATCTGATGTACGATATTTATAGTGACATGTGCTTT
TCATTTTCTCATGAGAAAACTAAATATTGTGTTGTACATTTGTTCTTAGCATATATTAAA
GTTTTGAACCAAATGTGTTAAAGCTTATGCTTTGCCATGTAAATTTCCCAGAAGTTGTTG
AGCTCAAATGTATCCTACACCCAGCTGTAGAAATTTGTCAGAAATTGTTGAAATTTTGTA
TATAGTTGTACTGTTTAATTCTAGCCACTGCGCTAAACAGTATTTGAGTTACCATACAAT
ATGGCTTTACACAAGGAAATGTGTGGCTTTTGTTTTGTATTTTTCAGTATAGAAGTTCCT
GTGTCTTATTTAAAATAAAGTTATAGTAAAATGAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCACCAAAGTTTGCAGTAATATTCTCTCCTGAAGGTGCATTCGGGCTCCTTTAAATTAG
TCAGTGTTATAGGAGACTGTCATGGAAAAGGACTCAGTTTACTTTTGCCATTTTCACAGG
GGAACCTTTTAAAACAATCTCTTCAGCAGCAGACACCTTTAACCCTAATAATCTCAGGCC
TTGATGAAAATACTATATTTTGTAGATTATGGTTAAAGGGAGAAAATTATTAGTTCTGTA
AGATAAATGTGAGCTCCATTAACTTCTGATATCTGGTTTAGCATTACATAATGTGTTGAT
CTTATGCTCTGCTTTTGTCCAAATAAGATGCAATAGTATCAATATCAATTTCTGAATGAT
GGACCGAATATGCTTTTTTGATGAAATCTGATGTACGATATTTATAGTGACATGTGCTTT
TCATTTTCTCATGAGAAAACTAAATATTGTGTTGTACATTTGTTCTTAGCATATATTAAA
GTTTTGAACCAAATGTGTTAAAGCTTATGCTTTGCCATGTAAATTTCCCAGAAGTTGTTG
AGCTCAAATGTATCCTACACCCAGCTGTAGAAATTTGTCAGAAATTGTTGAAATTTTGTA
TATAGTTGTACTGTTTAATTCTAGCCACTGCGCTAAACAGTATTTGAGTTACCATACAAT
ATGGCTTTACACAAGGAAATGTGTGGCTTTTGTTTTGTATTTTTCAGTATAGAAGTTCCT
GTGTCTTATTTAAAATAAAGTTATAGTAAAATGAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-465, gnl|bosTau2|chr17 (21594712-21594255)
               

               
               2-465, gnl|Hg17|chr7 (7901183-7901657)
               

               
               2-465, gnl|Mm7|chr6 (8553320-8555523)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-465, gnl|bosTau2|chr17 (21594712-21594255)
               

               
               2-465, gnl|Hg17|chr7 (7901183-7901657)
               

               
               2-465, gnl|Mm7|chr6 (8553320-8555523)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               sin (0.349895)
               

               
               fhi (0.169578)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.349895)
               

               
               fhi (0.169578)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

	2-465, gnl\|bosTau2\|chr17 (21594712-21594255)
	2-465, gnl\|Hg17\|chr7 (7901183-7901657)
	2-465, gnl\|Mm7\|chr6 (8553320-8555523)

	sin (0.349895)
	fhi (0.169578)
	thg (0.126791)
	ebs (0.118301)
	med (0.116252)