Non-Coding RNA Search

Ss1.1-Pig4-TMW8063B11.5

Sequence:


               
               ACAACTGCCGTTCTGACTTCCACCTTTAGGGCTTTGACCGACTTGAAAGGCCCACTAGAA
GCAGGGCCCTTTGGAGACATTTCCAACCTGCCTCTGAACACGGAGGATGCCGGGGACCCT
GCCCCGTTGCCCTTGTCCAAGGTGGATCCTTCCGTTCCAGATGCAACCGCTTCCCAGGAA
GATGGGAAGGCCAGTCCAGGCCGCTTCCTGAGCAGTGTTCTAGGAGGTCAGCACGGCCTT
TCACTTGAAAAGTGGCTCCTCGTTGGGACCCTGCTCTTCGGCGTTGTGTTCCTCGCCATC
GGCCTTGTCCTCGTGGGCAGAACGCTCTCAGAATCCCTCCGCCGGAAACGGTACTCGAGG
CTCGATTATTTGATCAATGGGATCTACGTTGACATCTAGGGAGGAAAACGAGATGTCTCT
GAAGTCACATAGTTACTAGTAGCCCCCGTGCAGGGAGTTTCTGCTGACTTGCTGATCGTA
GCGGGCTTTTTCAAGTAGTTTGAAGACAGGCTGATGCCTCAGACCACTTTGGTTTTGCTT
GTGCTTCGACGAGAAGGGAGTGAGGAAAGAACCAAATTGGGTAATGTGAGTGATCTGTTT
CTAAAATATTAGCAGAAAACAAAGCTGTACCTAAAGCAATAAAGAATAATTGCCACATAA
ATTGGAAAATGACTGCCTTTTTTACAAGGAAAAATGGTTAGGACTCCAAGGCTTCCCATT
CGTTAATATTTCTGGTTCCAGATAAAGTCAACTGTTTAGGATATTAATTCTAATGGATTT
ACTTTCCTTTTTACACGAATTCCAGTGAAATTTATTCCAGATGTATTTCCTTCCAATTAA
ATATTTGAATAAATCTTTTGTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAACTGCCGTTCTGACTTCCACCTTTAGGGCTTTGACCGACTTGAAAGGCCCACTAGAA
GCAGGGCCCTTTGGAGACATTTCCAACCTGCCTCTGAACACGGAGGATGCCGGGGACCCT
GCCCCGTTGCCCTTGTCCAAGGTGGATCCTTCCGTTCCAGATGCAACCGCTTCCCAGGAA
GATGGGAAGGCCAGTCCAGGCCGCTTCCTGAGCAGTGTTCTAGGAGGTCAGCACGGCCTT
TCACTTGAAAAGTGGCTCCTCGTTGGGACCCTGCTCTTCGGCGTTGTGTTCCTCGCCATC
GGCCTTGTCCTCGTGGGCAGAACGCTCTCAGAATCCCTCCGCCGGAAACGGTACTCGAGG
CTCGATTATTTGATCAATGGGATCTACGTTGACATCTAGGGAGGAAAACGAGATGTCTCT
GAAGTCACATAGTTACTAGTAGCCCCCGTGCAGGGAGTTTCTGCTGACTTGCTGATCGTA
GCGGGCTTTTTCAAGTAGTTTGAAGACAGGCTGATGCCTCAGACCACTTTGGTTTTGCTT
GTGCTTCGACGAGAAGGGAGTGAGGAAAGAACCAAATTGGGTAATGTGAGTGATCTGTTT
CTAAAATATTAGCAGAAAACAAAGCTGTACCTAAAGCAATAAAGAATAATTGCCACATAA
ATTGGAAAATGACTGCCTTTTTTACAAGGAAAAATGGTTAGGACTCCAAGGCTTCCCATT
CGTTAATATTTCTGGTTCCAGATAAAGTCAACTGTTTAGGATATTAATTCTAATGGATTT
ACTTTCCTTTTTACACGAATTCCAGTGAAATTTATTCCAGATGTATTTCCTTCCAATTAA
ATATTTGAATAAATCTTTTGTTTC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-860, gnl|bosTau2|chr19 (55203860-55204717)
               

               
               1-860, gnl|Hg17|chr12 (12374629-12373472)
               

               
               1-860, gnl|Mm7|chr6 (134624697-134623542)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-860, gnl|bosTau2|chr19 (55203860-55204717)
               

               
               1-860, gnl|Hg17|chr12 (12374629-12373472)
               

               
               1-860, gnl|Mm7|chr6 (134624697-134623542)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               cst (0.560146)
               

               
               cmu (0.372787)
               

               
               cje (0.330469)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               pty (0.142714)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               eru (0.120048)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.560146)
               

               
               cmu (0.372787)
               

               
               cje (0.330469)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               pty (0.142714)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               eru (0.120048)

	1-860, gnl\|bosTau2\|chr19 (55203860-55204717)
	1-860, gnl\|Hg17\|chr12 (12374629-12373472)
	1-860, gnl\|Mm7\|chr6 (134624697-134623542)

	cst (0.560146)
	cmu (0.372787)
	cje (0.330469)
	gul (0.177588)
	sin (0.174948)
	rec (0.17307)
	cut (0.169924)
	pty (0.142714)
	lyg (0.133103)
	ova (0.129132)
	sug (0.127291)
	eru (0.120048)