Non-Coding RNA Search

Ss1.1-Pig4-TMW8063B17.5

Sequence:


               
               GATTGAGAAGTTTATAGTAAAGGGATACTTAACAGAACACTTTTATATCATTTAAAAGAT
GACCTGACCAAAAACTTTACAGGATTCATAAAATCAGGGATCATTTTGCTATTGACTTCA
CAGTGATCAGTAGTTTTATAGGTAATATTATAGTTAATTTGCAGCATTTTAGTACTTGTA
TTATTTATTTTTGGTCAGAAATAGTAAATTAAATATTTTTTGATAGTTTATAGGTAATGA
TCAACCCATAACTTTTAAAAGAAACAAAATGTTTCTAATAATTGAGTTAACTTTTGATTA
TACAAACTAGGAAAGGCAGGGAAATTTATGGGTTCCCCTTCTCCCCAGTGATTCTATTAA
GATGTTCTTTATGTTAAACTTTCAAAGTACTTTATAAATTTAGTTACCAGTTACTACTTA
TAAATTGACAATTTTCTGAAAAATCCAGTTTCAGCAGACTTTTAATGAAGGTGAAAGCAA
CCCTTATGTGCTTTCTACTTATTTGAATGTTCCTCAAGTATTTTATATTTAAAAAAAAAA
AAAGAAGGAAAAGAAAAAAACAGTGCCTCTGTTTTTAGAAAACTACTGCTCAGTAAAGTT
GTTTAAACCATTTCTGGTAGCTAATGACAATTTTATATTAAATTGTATACTAACTTTAGT
GAGACTGATTTTTTTAGTTGTTTACAGTACAAATACTTGTATTTGTTTTTTAATTGCAGT
ATTTCCATTGTCGCAGTAATTTAGTAAAACTCTGTGGCTGCCTTGATTTTGACAGATTTT
GTTAATATAAACTGATTGTTAGGCAATTAGTTATATTTATGCATAAATCAATTGCACTAT
AATTCATGAATTATTTATTACAATATTTTCTAATGAATTCATGTATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTGAGAAGTTTATAGTAAAGGGATACTTAACAGAACACTTTTATATCATTTAAAAGAT
GACCTGACCAAAAACTTTACAGGATTCATAAAATCAGGGATCATTTTGCTATTGACTTCA
CAGTGATCAGTAGTTTTATAGGTAATATTATAGTTAATTTGCAGCATTTTAGTACTTGTA
TTATTTATTTTTGGTCAGAAATAGTAAATTAAATATTTTTTGATAGTTTATAGGTAATGA
TCAACCCATAACTTTTAAAAGAAACAAAATGTTTCTAATAATTGAGTTAACTTTTGATTA
TACAAACTAGGAAAGGCAGGGAAATTTATGGGTTCCCCTTCTCCCCAGTGATTCTATTAA
GATGTTCTTTATGTTAAACTTTCAAAGTACTTTATAAATTTAGTTACCAGTTACTACTTA
TAAATTGACAATTTTCTGAAAAATCCAGTTTCAGCAGACTTTTAATGAAGGTGAAAGCAA
CCCTTATGTGCTTTCTACTTATTTGAATGTTCCTCAAGTATTTTATATTTAAAAAAAAAA
AAAGAAGGAAAAGAAAAAAACAGTGCCTCTGTTTTTAGAAAACTACTGCTCAGTAAAGTT
GTTTAAACCATTTCTGGTAGCTAATGACAATTTTATATTAAATTGTATACTAACTTTAGT
GAGACTGATTTTTTTAGTTGTTTACAGTACAAATACTTGTATTTGTTTTTTAATTGCAGT
ATTTCCATTGTCGCAGTAATTTAGTAAAACTCTGTGGCTGCCTTGATTTTGACAGATTTT
GTTAATATAAACTGATTGTTAGGCAATTAGTTATATTTATGCATAAATCAATTGCACTAT
AATTCATGAATTATTTATTACAATATTTTCTAATGAATTCATGTATCT

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-119, + strand, RNAz p=0.830658
               

               
               239-357, - strand, RNAz p=0.912856
               

               
               558-832, - strand, RNAz p=0.953171

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, + strand, RNAz p=0.830658
               

               
               239-357, - strand, RNAz p=0.912856
               

               
               558-832, - strand, RNAz p=0.953171

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               760-848, + strand, RNAmicro p=0.968929

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               760-848, + strand, RNAmicro p=0.968929

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-888, gnl|bosTau2|chr6 (32377070-32377951)
               

               
               1-888, gnl|Hg17|chr4 (17559578-17558707)
               

               
               1-888, gnl|Mm7|chr5 (45053566-45052685)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-888, gnl|bosTau2|chr6 (32377070-32377951)
               

               
               1-888, gnl|Hg17|chr4 (17559578-17558707)
               

               
               1-888, gnl|Mm7|chr5 (45053566-45052685)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               rec (0.17307)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)

	1-119, + strand, RNAz p=0.830658
	239-357, - strand, RNAz p=0.912856
	558-832, - strand, RNAz p=0.953171

	1-888, gnl\|bosTau2\|chr6 (32377070-32377951)
	1-888, gnl\|Hg17\|chr4 (17559578-17558707)
	1-888, gnl\|Mm7\|chr5 (45053566-45052685)