Ss1.1-Pig4-TMW8063B19.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGTCATCACGTAGCTCCGGAGGTAGATCCACGCCGCGGTCCCCGCCTACCAAGCGCGCAG CTTCGCCTCCGCTGTTGCTAAGCGGCCTTGGATACCTGGCCGCGGGACTCTGGGTGGTGT CAAGTGGAGATGGTGGTCACTGGGCCTCAGGCGATCATGGAGAAAGAGCTCCGGAGCACC ATTCTTTTCAATGCATACAAAAAGGAGGTATTTACCACCAGCAATGGCTATAAATCCATG CAGAAAAAACTTCGGGGTAATTGGAAAATTCAGAGCTTAAAAGATGAAATCACATCTGAG AAGCTAATTGGGGTGAAACTGTGGATTACAGCGGGGCCAAGGGAAAAATTTACTGCAGCT GAGTTTGAAGTCCTGAAGAAGTACCTTGATGGAGGTGGAGATATTCTTGTGATGCTGGGA GAGGGTGGGGAATCCAGATTTGATACCAATATTAACTTTCTCCTAGAAGAGTATGGAATC ATGGTTAATAACGATGCCGTGGTTAGAAATGTGTATTATAAGTATTTCCATCCTAAAGAA GCCCTGGTTTCCGATGGAGTTTTGAATAGGGAAATTAGCCGAGCTGCAGGGAAGGCAGTG CCTGGAATCATTGACGAGGAGAGCAGTGGAAACAATGCCCAGGCTCTCACCTTTGTCTAT CCTTTTGGTGCCACATTGAATGTCATGAAACCAGCAGTGGCTGTTCTGTCCACAGGGTCT GTCTGTTTCCCACTTAACAGACCCATCCTGGCTTTTTATCACTCAAAGGACCAAGGTGGG AAACTAGCTGTGCTTGGCTCATGTCACATGTTCAGTGACCAATATTTGGATAAAGAAGAA AACAGCAAAATCATGGATGTTGTTTTCCAGTGGCTCACGGCAGGAGACATCCAACTAAAC CAGATTGATGCTGAGGACCCAGAGATTTCCGACTACATGATGGTGCCTGACACGGCCACC CTGTCCGAGCGGCTGCGAGTGTGTCTCCAGGAGGGTGATGAGAACCCGAGGGACTTCACC ACCCTCTTCGACCTGTCCATTTACCAGCTGGATACCACTTCCCTCCCCAAGGTCATCAAG GCTCACGAACAGCTCAACGTGAAGCATGAACCTCTCCAGCTCATCCAACCTCAGTTTGAG ACGCCGCTGCCCACCCTTCAGCCCGCAGTTTTCCCGCCAAGTTTCAGGGAACTACCACCT CCTCCACTGGAGCTGTTTGACTTAGACGAGACGTTCTCCTCCGAGAAGGCCCGGCTTGCT CAGATTACCAATAAGTGTACTGAAGACGACCTGGAATTCTACATCAGGAAGTGTGGTGAC ATTCTTGGAGTCACTAATAAACTACCAAAGGACCAACAAGATGCCAAACATATCCTTGAG CATATCTTCTTCCAAGTGGTGGAGTTCAAGAAATTGAACCAGGAACATGATATTGACACA AGTGAAACGGCATTCCAGAGCAACTTCTGAGGACCAAGGCTCTTGAAGCATTTTCTGCCT CCTGATTCTCTTTGTAAACTTTTTGAACTGTCCCTCAGTTCCTTAGCACAACTGTCAATA CGGTCTTTCATCTGCCAGCTGTGGAAGGTCTGTGCATCTTCTGCAGGGTTCAGAGAGGGA TGACATTTCTAACTTACAAGATCCTTATATAAGATACATTCTATTTTTTAAATTAAATCT GTTTGAATATGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGTCATCACGTAGCTCCGGAGGTAGATCCACGCCGCGGTCCCCGCCTACCAAGCGCGCAG CTTCGCCTCCGCTGTTGCTAAGCGGCCTTGGATACCTGGCCGCGGGACTCTGGGTGGTGT CAAGTGGAGATGGTGGTCACTGGGCCTCAGGCGATCATGGAGAAAGAGCTCCGGAGCACC ATTCTTTTCAATGCATACAAAAAGGAGGTATTTACCACCAGCAATGGCTATAAATCCATG CAGAAAAAACTTCGGGGTAATTGGAAAATTCAGAGCTTAAAAGATGAAATCACATCTGAG AAGCTAATTGGGGTGAAACTGTGGATTACAGCGGGGCCAAGGGAAAAATTTACTGCAGCT GAGTTTGAAGTCCTGAAGAAGTACCTTGATGGAGGTGGAGATATTCTTGTGATGCTGGGA GAGGGTGGGGAATCCAGATTTGATACCAATATTAACTTTCTCCTAGAAGAGTATGGAATC ATGGTTAATAACGATGCCGTGGTTAGAAATGTGTATTATAAGTATTTCCATCCTAAAGAA GCCCTGGTTTCCGATGGAGTTTTGAATAGGGAAATTAGCCGAGCTGCAGGGAAGGCAGTG CCTGGAATCATTGACGAGGAGAGCAGTGGAAACAATGCCCAGGCTCTCACCTTTGTCTAT CCTTTTGGTGCCACATTGAATGTCATGAAACCAGCAGTGGCTGTTCTGTCCACAGGGTCT GTCTGTTTCCCACTTAACAGACCCATCCTGGCTTTTTATCACTCAAAGGACCAAGGTGGG AAACTAGCTGTGCTTGGCTCATGTCACATGTTCAGTGACCAATATTTGGATAAAGAAGAA AACAGCAAAATCATGGATGTTGTTTTCCAGTGGCTCACGGCAGGAGACATCCAACTAAAC CAGATTGATGCTGAGGACCCAGAGATTTCCGACTACATGATGGTGCCTGACACGGCCACC CTGTCCGAGCGGCTGCGAGTGTGTCTCCAGGAGGGTGATGAGAACCCGAGGGACTTCACC ACCCTCTTCGACCTGTCCATTTACCAGCTGGATACCACTTCCCTCCCCAAGGTCATCAAG GCTCACGAACAGCTCAACGTGAAGCATGAACCTCTCCAGCTCATCCAACCTCAGTTTGAG ACGCCGCTGCCCACCCTTCAGCCCGCAGTTTTCCCGCCAAGTTTCAGGGAACTACCACCT CCTCCACTGGAGCTGTTTGACTTAGACGAGACGTTCTCCTCCGAGAAGGCCCGGCTTGCT CAGATTACCAATAAGTGTACTGAAGACGACCTGGAATTCTACATCAGGAAGTGTGGTGAC ATTCTTGGAGTCACTAATAAACTACCAAAGGACCAACAAGATGCCAAACATATCCTTGAG CATATCTTCTTCCAAGTGGTGGAGTTCAAGAAATTGAACCAGGAACATGATATTGACACA AGTGAAACGGCATTCCAGAGCAACTTCTGAGGACCAAGGCTCTTGAAGCATTTTCTGCCT CCTGATTCTCTTTGTAAACTTTTTGAACTGTCCCTCAGTTCCTTAGCACAACTGTCAATA CGGTCTTTCATCTGCCAGCTGTGGAAGGTCTGTGCATCTTCTGCAGGGTTCAGAGAGGGA TGACATTTCTAACTTACAAGATCCTTATATAAGATACATTCTATTTTTTAAATTAAATCT GTTTGAATATGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 374-491, + strand, RNAz p=0.776424 | |
| 652-769, - strand, RNAz p=0.912383 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 374-491, + strand, RNAz p=0.776424 | |
| 652-769, - strand, RNAz p=0.912383 |
| Aligned organism(s): 62 entry(ies) | More info |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
| 149-275, gnl|bosTau2|chr13 (52740170-52740044) | |
| 149-275, gnl|Hg17|chr20 (41656748-41656871) | |
| 149-275, gnl|Mm7|chr2 (162763263-162763389) | |
| 362-491, gnl|bosTau2|chr13 (52738350-52738221) | |
| 362-491, gnl|canFam2|chr24 (34276152-34276301) | |
| 362-491, gnl|danRer3|chr11 (504167-504293) | |
| 362-491, gnl|dasNov1|scaffold_117693 (2059-1922) | |
| 362-491, gnl|echTel1|scaffold_279353 (50403-50539) | |
| 362-491, gnl|fr1|chrUn (163448332-163448466) | |
| 362-491, gnl|hg17|chr20 (41665813-41665962) | |
| 362-491, gnl|Hg17|chr20 (41665812-41665941) | |
| 362-491, gnl|loxAfr1|scaffold_5164 (7855-7706) | |
| 362-491, gnl|mm7|chr2 (162766220-162766360) | |
| 362-491, gnl|Mm7|chr2 (162766219-162766348) | |
| 362-491, gnl|monDom2|scaffold_6 (9858498-9858349) | |
| 362-491, gnl|oryCun1|scaffold_175429 (14161-14012) | |
| 362-491, gnl|panTro1|chr21 (44104910-44105059) | |
| 362-491, gnl|rheMac2|chr10 (20847283-20847134) | |
| 362-491, gnl|rn3|chr3 (153803679-153803827) | |
| 362-491, gnl|tetNig1|chr11 (3057505-3057636) | |
| 362-491, gnl|xenTro1|scaffold_35 (158489-158628) | |
| 642-769, gnl|bosTau2|chr13 (52731275-52731148) | |
| 642-769, gnl|Hg17|chr20 (41675904-41676031) | |
| 642-769, gnl|Mm7|chr2 (162770625-162770752) | |
| 923-1080, gnl|bosTau2|chr13 (52722556-52722399) | |
| 923-1080, gnl|canFam2|chr24 (34293972-34294090) | |
| 923-1080, gnl|danRer3|chr11 (509567-509685) | |
| 923-1080, gnl|echTel1|scaffold_279353 (75751-75868) | |
| 923-1080, gnl|fr1|chrUn (163449611-163449725) | |
| 923-1080, gnl|galGal2|chr20 (3460778-3460659) | |
| 923-1080, gnl|hg17|chr20 (41685940-41686058) | |
| 923-1080, gnl|Hg17|chr20 (41685943-41686100) | |
| 923-1080, gnl|loxAfr1|scaffold_902 (8276-8394) | |
| 923-1080, gnl|mm7|chr2 (162777444-162777562) | |
| 923-1080, gnl|Mm7|chr2 (162777447-162777604) | |
| 923-1080, gnl|monDom2|scaffold_6 (9844281-9844163) | |
| 923-1080, gnl|oryCun1|scaffold_82661 (5664-5546) | |
| 923-1080, gnl|panTro1|chr21 (44125343-44125461) | |
| 923-1080, gnl|rheMac2|chr10 (20827050-20826932) | |
| 923-1080, gnl|rn3|chr3 (153814739-153814857) | |
| 923-1080, gnl|tetNig1|chrUn_random (143319630-143319515) | |
| 923-1080, gnl|xenTro1|scaffold_35 (161591-161709) | |
| 1168-1278, gnl|bosTau2|chr13 (52709365-52709255) | |
| 1168-1278, gnl|canFam2|chr24 (34301527-34301656) | |
| 1168-1278, gnl|danRer3|chr11 (512739-512860) | |
| 1168-1278, gnl|echTel1|scaffold_279353 (81336-81475) | |
| 1168-1278, gnl|fr1|chrUn (163450034-163450162) | |
| 1168-1278, gnl|galGal2|chr20 (3458334-3458205) | |
| 1168-1278, gnl|hg17|chr20 (41699195-41699335) | |
| 1168-1278, gnl|Hg17|chr20 (41699199-41699309) | |
| 1168-1278, gnl|loxAfr1|scaffold_137343 (1134-1000) | |
| 1168-1278, gnl|mm7|chr2 (162783577-162783696) | |
| 1168-1278, gnl|Mm7|chr2 (162783581-162783691) | |
| 1168-1278, gnl|monDom2|scaffold_6 (9831453-9831321) | |
| 1168-1278, gnl|oryCun1|scaffold_153745 (13713-13599) | |
| 1168-1278, gnl|panTro1|chr21 (44139087-44139229) | |
| 1168-1278, gnl|rheMac2|chr10 (20816567-20816429) | |
| 1168-1278, gnl|rn3|chr3 (153820314-153820433) | |
| 1168-1278, gnl|xenTro1|scaffold_35 (163487-163606) | |
| 1419-1630, gnl|bosTau2|chr13 (52704230-52704029) | |
| 1419-1630, gnl|Hg17|chr20 (41708986-41709212) | |
| 1419-1630, gnl|Mm7|chr2 (162786794-162786970) |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 149-275, gnl|bosTau2|chr13 (52740170-52740044) | |
| 149-275, gnl|Hg17|chr20 (41656748-41656871) | |
| 149-275, gnl|Mm7|chr2 (162763263-162763389) | |
| 362-491, gnl|bosTau2|chr13 (52738350-52738221) | |
| 362-491, gnl|canFam2|chr24 (34276152-34276301) | |
| 362-491, gnl|danRer3|chr11 (504167-504293) | |
| 362-491, gnl|dasNov1|scaffold_117693 (2059-1922) | |
| 362-491, gnl|echTel1|scaffold_279353 (50403-50539) | |
| 362-491, gnl|fr1|chrUn (163448332-163448466) | |
| 362-491, gnl|hg17|chr20 (41665813-41665962) | |
| 362-491, gnl|Hg17|chr20 (41665812-41665941) | |
| 362-491, gnl|loxAfr1|scaffold_5164 (7855-7706) | |
| 362-491, gnl|mm7|chr2 (162766220-162766360) | |
| 362-491, gnl|Mm7|chr2 (162766219-162766348) | |
| 362-491, gnl|monDom2|scaffold_6 (9858498-9858349) | |
| 362-491, gnl|oryCun1|scaffold_175429 (14161-14012) | |
| 362-491, gnl|panTro1|chr21 (44104910-44105059) | |
| 362-491, gnl|rheMac2|chr10 (20847283-20847134) | |
| 362-491, gnl|rn3|chr3 (153803679-153803827) | |
| 362-491, gnl|tetNig1|chr11 (3057505-3057636) | |
| 362-491, gnl|xenTro1|scaffold_35 (158489-158628) | |
| 642-769, gnl|bosTau2|chr13 (52731275-52731148) | |
| 642-769, gnl|Hg17|chr20 (41675904-41676031) | |
| 642-769, gnl|Mm7|chr2 (162770625-162770752) | |
| 923-1080, gnl|bosTau2|chr13 (52722556-52722399) | |
| 923-1080, gnl|canFam2|chr24 (34293972-34294090) | |
| 923-1080, gnl|danRer3|chr11 (509567-509685) | |
| 923-1080, gnl|echTel1|scaffold_279353 (75751-75868) | |
| 923-1080, gnl|fr1|chrUn (163449611-163449725) | |
| 923-1080, gnl|galGal2|chr20 (3460778-3460659) | |
| 923-1080, gnl|hg17|chr20 (41685940-41686058) | |
| 923-1080, gnl|Hg17|chr20 (41685943-41686100) | |
| 923-1080, gnl|loxAfr1|scaffold_902 (8276-8394) | |
| 923-1080, gnl|mm7|chr2 (162777444-162777562) | |
| 923-1080, gnl|Mm7|chr2 (162777447-162777604) | |
| 923-1080, gnl|monDom2|scaffold_6 (9844281-9844163) | |
| 923-1080, gnl|oryCun1|scaffold_82661 (5664-5546) | |
| 923-1080, gnl|panTro1|chr21 (44125343-44125461) | |
| 923-1080, gnl|rheMac2|chr10 (20827050-20826932) | |
| 923-1080, gnl|rn3|chr3 (153814739-153814857) | |
| 923-1080, gnl|tetNig1|chrUn_random (143319630-143319515) | |
| 923-1080, gnl|xenTro1|scaffold_35 (161591-161709) | |
| 1168-1278, gnl|bosTau2|chr13 (52709365-52709255) | |
| 1168-1278, gnl|canFam2|chr24 (34301527-34301656) | |
| 1168-1278, gnl|danRer3|chr11 (512739-512860) | |
| 1168-1278, gnl|echTel1|scaffold_279353 (81336-81475) | |
| 1168-1278, gnl|fr1|chrUn (163450034-163450162) | |
| 1168-1278, gnl|galGal2|chr20 (3458334-3458205) | |
| 1168-1278, gnl|hg17|chr20 (41699195-41699335) | |
| 1168-1278, gnl|Hg17|chr20 (41699199-41699309) | |
| 1168-1278, gnl|loxAfr1|scaffold_137343 (1134-1000) | |
| 1168-1278, gnl|mm7|chr2 (162783577-162783696) | |
| 1168-1278, gnl|Mm7|chr2 (162783581-162783691) | |
| 1168-1278, gnl|monDom2|scaffold_6 (9831453-9831321) | |
| 1168-1278, gnl|oryCun1|scaffold_153745 (13713-13599) | |
| 1168-1278, gnl|panTro1|chr21 (44139087-44139229) | |
| 1168-1278, gnl|rheMac2|chr10 (20816567-20816429) | |
| 1168-1278, gnl|rn3|chr3 (153820314-153820433) | |
| 1168-1278, gnl|xenTro1|scaffold_35 (163487-163606) | |
| 1419-1630, gnl|bosTau2|chr13 (52704230-52704029) | |
| 1419-1630, gnl|Hg17|chr20 (41708986-41709212) | |
| 1419-1630, gnl|Mm7|chr2 (162786794-162786970) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| cbe (0.239234) | |
| ece (0.229305) | |
| fcc (0.197785) | |
| tbr (0.154178) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ski (0.146735) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| ova (0.129132) | |
| sug (0.127291) | |
| med (0.116252) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| cty (0.10408) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (0.239234) | |
| ece (0.229305) | |
| fcc (0.197785) | |
| tbr (0.154178) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ski (0.146735) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| ova (0.129132) | |
| sug (0.127291) | |
| med (0.116252) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| cty (0.10408) |