Ss1.1-Pig4-TMW8063C01.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGAGCGGCTGAAACGTGAAGCGGAGGATGGCGCTGGTGGCGCTGGCGGCGAGGGCTCGG CTGGGGAACTGGCTGAGCGGGCGGGGGCTGGGGCTGGGGCTGCGGCTGGGGCGCGGGCAC TGGACGGCGGCCGGGCGCTCTCGGAGTCGGCGCGAGGCGGCCGAGGCCGAGGCGGAGGCG CCGGTGTTCCAGTACGTGGGCGAGCGTGCGGCCCGCGCCGACCGCATCTTCGTGTGGGGC TTCAGCTTCTCGGGGGCGCTGGGCGTGCCCACCTTCGTGCTGCCCAGCTCTGGGCCCCAT CCTCACGCCGGCTTGCGGCCGCGCCGCAGGATCCAGTGTGTACCTTACCGCCTGGAGCTG GACCAAAAGATTTCATCTGCTGCCTGTGGCTATGGATTCACATTGCTGTCGTCTAAAACC AGGGACGTGACGAAAGTTTGGGGCATGGGACTCAACAAAGATTCTCAGCTTGGATTTCAC AGGAGCCGGAAAGATAAGACCAGGGGATACGAGTATGTCCTGGAGCCCTCGCCCGTCCCA CTGCCTCTGCACAGACCTCAGGAGACGCAGGTGCTGCAGGTGTCCTGCGGCAGAGCCCAC TCTCTCGTCCTGACAGACGGCGAAGGAGTCTTCAGCATGGGGAACAACTCGTACGGGCAG TGCGGAAGAAAGGTGGTGGAAAACGAAATTTACAGTGAAAGTCACAAAGTCCATAGGATG CAGGACTTCGATGGGCAGGTGGTCCAGGTCGCCTGTGGTCAAGACCATAGTCTGTTCCTC ACGGATAAAGGAGAAGTGTACTCTTGTGGCTGGGGCGCGGATGGGCAGACAGGTCTGGGC CACTACAATATCACCAGCGCGCCCACCAAGCTGGGTGGAGACCTTGCCGGAGTGAACGTC GTCCAGGTGGCCACGTACGGTGACTGCTGCCTGGCAGTGTCGGCCGATGGCAGCCTTTTC GGCTGGGGCAACTCCGAGTACCTGCAGCTGGCCTCTGTCACGGACTCCACCCAGGTGAAC GTGCCCCGGTGCCTGCCCTTCTCGGGGGTGGGGCAGGTGAAGCAGGCCGCGTGTGGGGGC ACTGGCTGTGCTGTGTTAAATGGAGAAGGACATGTTTTCGTCTGGGGCTACGGAATTCTT GGGAAAGGACCAAACCTGGTGGAAACTGCTCTTCCAGAAATGATCCCACCCACACTCTTT GGGTTGACGGAGCTCAACCCCGAAGTCCGCGTTTCCCGAATTCGCTGTGGACTCAGCCAC TTCGCCGCCCTGACCGACAGAGGAGAGCTGTTTGTGTGGGGGAAGAACATCCGAGGGTGC CTGGGAATCGGTCGTCTGGAGGACCAGTACTTCCCGTGGAGGGTGACGATGCCCGGGGAG CCCGTGGACGTGGCGTGTGGTGTGGATCACATGGTGACTCTGGCCAAGTCATTCGTCTGA GCCGCCTCTCTGACCCGCTTGAGCCCAGCCCCGGCCTCAGGACCACTGGGACAGTTCAGC AGAGGCGGCTGCGGGGCCCCATGCAGCGTGCGCGCTCTCCTGCTGCCTGTCGCAGGAGGG GTGGCCGCACTGCACTCGGGATGCTCACCTTGGCTCCTCGTAGGGACTGCACAACGGTTT CTGGTGCTACATCTGGTCTGAGAAAAAGCTTACCTTTCGCAGCAGGCCACGTTCCTGCCT CTTAAAAGGTGCCTGGCAGAGTGTAGCGCTCAGGAGAGCTTCTGTTGCCCTGGGCACGGC GGGGCTCTCGCTGGAGTCTGGGCAGTTGTGCGAGGGTATCGGTGCGAGCCCCAGCCTGAC GCAGGGGGCGGTGGGCTTGGGCTGGGGGCTTTCCTGGAGGCCCTCGTCCGCTCAGCTGTT TCCACTCAGCTGCCCCCACCTGCTCGCTGCTGGGACACCCCTTCATTGCACTGGGGTTCT TCCTGGAAATGCCAGTGGGCACCAGCCCAGGATCCTGCGGGCCCATGGCTGCCCCAACTT TGTAGCCATCCTTCCTGCCTGGCTTAGATGTGAGAAGCCGCCTGGGGAAGGAGATGGAGC CCAAGTTACTGGGGGCCGAGGGCTCTGAACACATCCTGCCAAAGCCTGGCTGGAGCGCCA GCTTTGGAGGAGAAAGATTCAGAAATGGTGAAAAACCCCTGGGTACCGTAACCTTGTCTT TTTCTTTAAAAACATCTTTTAAAAATCTCTTTTGGAATAAAGTCTATTTTTCTTTTTGCC TTTTCATTCGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGAGCGGCTGAAACGTGAAGCGGAGGATGGCGCTGGTGGCGCTGGCGGCGAGGGCTCGG CTGGGGAACTGGCTGAGCGGGCGGGGGCTGGGGCTGGGGCTGCGGCTGGGGCGCGGGCAC TGGACGGCGGCCGGGCGCTCTCGGAGTCGGCGCGAGGCGGCCGAGGCCGAGGCGGAGGCG CCGGTGTTCCAGTACGTGGGCGAGCGTGCGGCCCGCGCCGACCGCATCTTCGTGTGGGGC TTCAGCTTCTCGGGGGCGCTGGGCGTGCCCACCTTCGTGCTGCCCAGCTCTGGGCCCCAT CCTCACGCCGGCTTGCGGCCGCGCCGCAGGATCCAGTGTGTACCTTACCGCCTGGAGCTG GACCAAAAGATTTCATCTGCTGCCTGTGGCTATGGATTCACATTGCTGTCGTCTAAAACC AGGGACGTGACGAAAGTTTGGGGCATGGGACTCAACAAAGATTCTCAGCTTGGATTTCAC AGGAGCCGGAAAGATAAGACCAGGGGATACGAGTATGTCCTGGAGCCCTCGCCCGTCCCA CTGCCTCTGCACAGACCTCAGGAGACGCAGGTGCTGCAGGTGTCCTGCGGCAGAGCCCAC TCTCTCGTCCTGACAGACGGCGAAGGAGTCTTCAGCATGGGGAACAACTCGTACGGGCAG TGCGGAAGAAAGGTGGTGGAAAACGAAATTTACAGTGAAAGTCACAAAGTCCATAGGATG CAGGACTTCGATGGGCAGGTGGTCCAGGTCGCCTGTGGTCAAGACCATAGTCTGTTCCTC ACGGATAAAGGAGAAGTGTACTCTTGTGGCTGGGGCGCGGATGGGCAGACAGGTCTGGGC CACTACAATATCACCAGCGCGCCCACCAAGCTGGGTGGAGACCTTGCCGGAGTGAACGTC GTCCAGGTGGCCACGTACGGTGACTGCTGCCTGGCAGTGTCGGCCGATGGCAGCCTTTTC GGCTGGGGCAACTCCGAGTACCTGCAGCTGGCCTCTGTCACGGACTCCACCCAGGTGAAC GTGCCCCGGTGCCTGCCCTTCTCGGGGGTGGGGCAGGTGAAGCAGGCCGCGTGTGGGGGC ACTGGCTGTGCTGTGTTAAATGGAGAAGGACATGTTTTCGTCTGGGGCTACGGAATTCTT GGGAAAGGACCAAACCTGGTGGAAACTGCTCTTCCAGAAATGATCCCACCCACACTCTTT GGGTTGACGGAGCTCAACCCCGAAGTCCGCGTTTCCCGAATTCGCTGTGGACTCAGCCAC TTCGCCGCCCTGACCGACAGAGGAGAGCTGTTTGTGTGGGGGAAGAACATCCGAGGGTGC CTGGGAATCGGTCGTCTGGAGGACCAGTACTTCCCGTGGAGGGTGACGATGCCCGGGGAG CCCGTGGACGTGGCGTGTGGTGTGGATCACATGGTGACTCTGGCCAAGTCATTCGTCTGA GCCGCCTCTCTGACCCGCTTGAGCCCAGCCCCGGCCTCAGGACCACTGGGACAGTTCAGC AGAGGCGGCTGCGGGGCCCCATGCAGCGTGCGCGCTCTCCTGCTGCCTGTCGCAGGAGGG GTGGCCGCACTGCACTCGGGATGCTCACCTTGGCTCCTCGTAGGGACTGCACAACGGTTT CTGGTGCTACATCTGGTCTGAGAAAAAGCTTACCTTTCGCAGCAGGCCACGTTCCTGCCT CTTAAAAGGTGCCTGGCAGAGTGTAGCGCTCAGGAGAGCTTCTGTTGCCCTGGGCACGGC GGGGCTCTCGCTGGAGTCTGGGCAGTTGTGCGAGGGTATCGGTGCGAGCCCCAGCCTGAC GCAGGGGGCGGTGGGCTTGGGCTGGGGGCTTTCCTGGAGGCCCTCGTCCGCTCAGCTGTT TCCACTCAGCTGCCCCCACCTGCTCGCTGCTGGGACACCCCTTCATTGCACTGGGGTTCT TCCTGGAAATGCCAGTGGGCACCAGCCCAGGATCCTGCGGGCCCATGGCTGCCCCAACTT TGTAGCCATCCTTCCTGCCTGGCTTAGATGTGAGAAGCCGCCTGGGGAAGGAGATGGAGC CCAAGTTACTGGGGGCCGAGGGCTCTGAACACATCCTGCCAAAGCCTGGCTGGAGCGCCA GCTTTGGAGGAGAAAGATTCAGAAATGGTGAAAAACCCCTGGGTACCGTAACCTTGTCTT TTTCTTTAAAAACATCTTTTAAAAATCTCTTTTGGAATAAAGTCTATTTTTCTTTTTGCC TTTTCATTCGCA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 1-369, gnl|bosTau2|chr25 (28884431-28884781) | |
| 1-369, gnl|Hg17|chr7 (73934251-73933901) | |
| 1-369, gnl|Mm7|chr5 (133425905-133425564) | |
| 502-628, gnl|bosTau2|chr25 (28891436-28891562) | |
| 502-628, gnl|Hg17|chr7 (73927254-73927128) | |
| 502-628, gnl|Mm7|chr5 (133418508-133418382) | |
| 830-1016, gnl|bosTau2|chr25 (28896229-28896415) | |
| 830-1016, gnl|canFam2|chr6 (8620530-8620716) | |
| 830-1016, gnl|danRer3|chr5 (67394923-67394745) | |
| 830-1016, gnl|dasNov1|scaffold_259447 (1168-1367) | |
| 830-1016, gnl|echTel1|scaffold_307838 (3157-3334) | |
| 830-1016, gnl|fr1|chrUn (7904918-7904734) | |
| 830-1016, gnl|galGal2|chr19 (2404660-2404826) | |
| 830-1016, gnl|hg17|chr7 (73918995-73919196) | |
| 830-1016, gnl|Hg17|chr7 (74416482-74416668) | |
| 830-1016, gnl|loxAfr1|scaffold_79009 (8347-8547) | |
| 830-1016, gnl|mm7|chr5 (133412770-133412933) | |
| 830-1016, gnl|Mm7|chr5 (133412972-133412786) | |
| 830-1016, gnl|monDom2|scaffold_81 (6345682-6345888) | |
| 830-1016, gnl|oryCun1|scaffold_87495 (1841-2026) | |
| 830-1016, gnl|panTro1|chr6 (75495605-75495404) | |
| 830-1016, gnl|rheMac2|chr3 (52344687-52344486) | |
| 830-1016, gnl|rn3|chr12 (23573373-23573217) | |
| 1102-1275, gnl|bosTau2|chr25 (28900231-28900404) | |
| 1102-1275, gnl|canFam2|chr6 (8615600-8615809) | |
| 1102-1275, gnl|danRer3|chr5 (67403495-67403313) | |
| 1102-1275, gnl|dasNov1|scaffold_41264 (2926-2719) | |
| 1102-1275, gnl|echTel1|scaffold_307838 (1563-1750) | |
| 1102-1275, gnl|fr1|chrUn (7905582-7905402) | |
| 1102-1275, gnl|galGal2|chr19 (2402305-2402517) | |
| 1102-1275, gnl|hg17|chr7 (73914651-73914860) | |
| 1102-1275, gnl|Hg17|chr7 (74420884-74421057) | |
| 1102-1275, gnl|loxAfr1|scaffold_79009 (266-475) | |
| 1102-1275, gnl|mm7|chr5 (133404896-133405103) | |
| 1102-1275, gnl|Mm7|chr5 (133405078-133404905) | |
| 1102-1275, gnl|monDom2|scaffold_81 (6343904-6344111) | |
| 1102-1275, gnl|oryCun1|scaffold_133005 (595-803) | |
| 1102-1275, gnl|panTro1|chr6 (75499912-75499703) | |
| 1102-1275, gnl|rheMac2|chr3 (52349831-52349622) | |
| 1102-1275, gnl|rn3|chr12 (23580492-23580284) | |
| 1102-1275, gnl|tetNig1|chrUn_random (29283535-29283715) | |
| 1102-1275, gnl|xenTro1|scaffold_21 (1767047-1766838) | |
| 1362-1517, gnl|bosTau2|chr25 (28907398-28907553) | |
| 1362-1517, gnl|Hg17|chr7 (74433847-74434011) | |
| 1362-1517, gnl|Mm7|chr5 (133398171-133398016) | |
| 1880-2224, gnl|bosTau2|chr25 (28907812-28908163) | |
| 1880-2224, gnl|canFam2|chr6 (8606983-8607345) | |
| 1880-2224, gnl|dasNov1|scaffold_41264 (11831-11396) | |
| 1880-2224, gnl|echTel1|scaffold_55056 (2589-2990) | |
| 1880-2224, gnl|hg17|chr7 (73900837-73901237) | |
| 1880-2224, gnl|Hg17|chr7 (74434336-74434771) | |
| 1880-2224, gnl|mm7|chr5 (133397163-133397536) | |
| 1880-2224, gnl|Mm7|chr5 (133397615-133397238) | |
| 1880-2224, gnl|panTro1|chr6 (75514159-75513758) | |
| 1880-2224, gnl|rheMac2|chr3 (52363394-52362993) | |
| 1880-2224, gnl|rn3|chr12 (23591204-23590863) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-369, gnl|bosTau2|chr25 (28884431-28884781) | |
| 1-369, gnl|Hg17|chr7 (73934251-73933901) | |
| 1-369, gnl|Mm7|chr5 (133425905-133425564) | |
| 502-628, gnl|bosTau2|chr25 (28891436-28891562) | |
| 502-628, gnl|Hg17|chr7 (73927254-73927128) | |
| 502-628, gnl|Mm7|chr5 (133418508-133418382) | |
| 830-1016, gnl|bosTau2|chr25 (28896229-28896415) | |
| 830-1016, gnl|canFam2|chr6 (8620530-8620716) | |
| 830-1016, gnl|danRer3|chr5 (67394923-67394745) | |
| 830-1016, gnl|dasNov1|scaffold_259447 (1168-1367) | |
| 830-1016, gnl|echTel1|scaffold_307838 (3157-3334) | |
| 830-1016, gnl|fr1|chrUn (7904918-7904734) | |
| 830-1016, gnl|galGal2|chr19 (2404660-2404826) | |
| 830-1016, gnl|hg17|chr7 (73918995-73919196) | |
| 830-1016, gnl|Hg17|chr7 (74416482-74416668) | |
| 830-1016, gnl|loxAfr1|scaffold_79009 (8347-8547) | |
| 830-1016, gnl|mm7|chr5 (133412770-133412933) | |
| 830-1016, gnl|Mm7|chr5 (133412972-133412786) | |
| 830-1016, gnl|monDom2|scaffold_81 (6345682-6345888) | |
| 830-1016, gnl|oryCun1|scaffold_87495 (1841-2026) | |
| 830-1016, gnl|panTro1|chr6 (75495605-75495404) | |
| 830-1016, gnl|rheMac2|chr3 (52344687-52344486) | |
| 830-1016, gnl|rn3|chr12 (23573373-23573217) | |
| 1102-1275, gnl|bosTau2|chr25 (28900231-28900404) | |
| 1102-1275, gnl|canFam2|chr6 (8615600-8615809) | |
| 1102-1275, gnl|danRer3|chr5 (67403495-67403313) | |
| 1102-1275, gnl|dasNov1|scaffold_41264 (2926-2719) | |
| 1102-1275, gnl|echTel1|scaffold_307838 (1563-1750) | |
| 1102-1275, gnl|fr1|chrUn (7905582-7905402) | |
| 1102-1275, gnl|galGal2|chr19 (2402305-2402517) | |
| 1102-1275, gnl|hg17|chr7 (73914651-73914860) | |
| 1102-1275, gnl|Hg17|chr7 (74420884-74421057) | |
| 1102-1275, gnl|loxAfr1|scaffold_79009 (266-475) | |
| 1102-1275, gnl|mm7|chr5 (133404896-133405103) | |
| 1102-1275, gnl|Mm7|chr5 (133405078-133404905) | |
| 1102-1275, gnl|monDom2|scaffold_81 (6343904-6344111) | |
| 1102-1275, gnl|oryCun1|scaffold_133005 (595-803) | |
| 1102-1275, gnl|panTro1|chr6 (75499912-75499703) | |
| 1102-1275, gnl|rheMac2|chr3 (52349831-52349622) | |
| 1102-1275, gnl|rn3|chr12 (23580492-23580284) | |
| 1102-1275, gnl|tetNig1|chrUn_random (29283535-29283715) | |
| 1102-1275, gnl|xenTro1|scaffold_21 (1767047-1766838) | |
| 1362-1517, gnl|bosTau2|chr25 (28907398-28907553) | |
| 1362-1517, gnl|Hg17|chr7 (74433847-74434011) | |
| 1362-1517, gnl|Mm7|chr5 (133398171-133398016) | |
| 1880-2224, gnl|bosTau2|chr25 (28907812-28908163) | |
| 1880-2224, gnl|canFam2|chr6 (8606983-8607345) | |
| 1880-2224, gnl|dasNov1|scaffold_41264 (11831-11396) | |
| 1880-2224, gnl|echTel1|scaffold_55056 (2589-2990) | |
| 1880-2224, gnl|hg17|chr7 (73900837-73901237) | |
| 1880-2224, gnl|Hg17|chr7 (74434336-74434771) | |
| 1880-2224, gnl|mm7|chr5 (133397163-133397536) | |
| 1880-2224, gnl|Mm7|chr5 (133397615-133397238) | |
| 1880-2224, gnl|panTro1|chr6 (75514159-75513758) | |
| 1880-2224, gnl|rheMac2|chr3 (52363394-52362993) | |
| 1880-2224, gnl|rn3|chr12 (23591204-23590863) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| cov (0.396458) | |
| cag (0.302389) | |
| lnt (0.284616) | |
| ill (0.175593) | |
| pla (0.133672) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.396458) | |
| cag (0.302389) | |
| lnt (0.284616) | |
| ill (0.175593) | |
| pla (0.133672) | |
| ecc (0.115035) | |
| eje (0.0988338) |