Ss1.1-Pig4-TMW8063C11.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTGATTATCCCTGCCGCTGCCGCTGCCGCTGCTCAACTCAGCTGCTGCCTCTGTCTTGA GGACCCCAGCGCCTCTCCCCCCCGACCATGCTGCCTGCTGCCACCGCCTCCCTCTTGGGG CCCCTCCTCACTGCCTGGGCTCTGCTGCCTTTTGCCCAGGGCCAGACCCCCAACTACACC AGACCTGTGTTCCTGTGTGGAGGGGATGTGACCGGGGAGTCGGGTTACCTGGCAAGTGAG GGTTTCCCTAACCTCTACCCCCCCAATAAGGAGTGCATCTGGACAATAACGGTCCCTGAG AGCCAGACTGTGTCCCTCTCCTTCCGAGTCTTTGACCTGGAGCTGCACCCCTCCTGCCGG TACGATGCTCTGGAGGTCTTTGCCGGGTCTGGAACCTCGGGTCAGCGGCTCGGACGCTTC TGCGGAACCTTCCGGCCGGCGCCCTTAGTCGCCCCTGGCAACCAGGTGACCCTGAGGATG ACATCGGACGAGGGCACGGGAGGACGAGGCTTCCTGCTCTGGTACAGCGGGCGGGCCACC TCCGGCACTGAGCACCAATTTTGCGGGGGGCGGCTGGAGAAGGCCCAGGGAACCCTGACC ACGCCCAACTGGCCCGAGTCCGATTACCCCCCGGGCATCAGCTGTTCCTGGCACATCATC GCGCCCCCGGACCAGGTGATCTCACTGACCTTCGGGAAGTTTGATCTGGAGCCCGACTCC TACTGCCGCTACGACTCGGTCAGCGTGTTCAACGGAGCCGTGAGCGACGACGCCAAGCGA CTGGGGAAGTTCTGCGGCGACAAGGCCCCAGGCCCCATCTCCTCCGAAGGGAACGAGCTC CTCGTCCAATTCGTCTCGGACCTCAGCGTCACGGCCGACGGCTTCTCGGCCTCCTACAGG ACCCTGCCGCGGGGCGCCACCGAGAAAGCGCCAGCCCAGAGCCCGGGGGAGGACGCCCGG CCAAGTCCCCCGCTCCTCGGCCCAGGCCCCAAGCCCGGAGCCGGGCCCAAAGTCAAGCCT GAACTCCCACCTGAGGAGAAACCGAAGGCCGCGCCCAAGGCGGAGGCAACTCCGGCGGGC TCCGATGGACCCAGTGTCCCCTGCCCAAAGCAGTGCCGAAGGACAGGCACGTTGCAGAGC AACTTCTGTAACAGCAACCTGGTGGTGACGGCAACAGTGAAGTCCATGGTTCGGGGCCCT GGGGAGGGCCTCACAGTCACCGTCAGTCTCATTGGTGTTTACAAAACCGGAGGCCTGGAC CTGCCCTCTCCACCCACTGACACTTCCCTGAAGTTTTATGCACCCTGCAAGCAGTGTCCC CCCATGAAGAAAGGAACCAGTTATCTGATGATGGGCCAGGTGGACGAGAACAGAGGTCCC ATCCTTCCTCCAGAGAGCTTCGTGGTTCTCTACCGGCCCAACCAGGACCAGATCCTCACC AACCTCGCCAAGAGGAGGTGCCCTTCCCAGCCTGTTCAGGCTGCTGAGTCCCAGGCCTGA GCCCTAGGCACCCCTTTCTTATCCAAATAAATGTTTCTTGACTGAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTGATTATCCCTGCCGCTGCCGCTGCCGCTGCTCAACTCAGCTGCTGCCTCTGTCTTGA GGACCCCAGCGCCTCTCCCCCCCGACCATGCTGCCTGCTGCCACCGCCTCCCTCTTGGGG CCCCTCCTCACTGCCTGGGCTCTGCTGCCTTTTGCCCAGGGCCAGACCCCCAACTACACC AGACCTGTGTTCCTGTGTGGAGGGGATGTGACCGGGGAGTCGGGTTACCTGGCAAGTGAG GGTTTCCCTAACCTCTACCCCCCCAATAAGGAGTGCATCTGGACAATAACGGTCCCTGAG AGCCAGACTGTGTCCCTCTCCTTCCGAGTCTTTGACCTGGAGCTGCACCCCTCCTGCCGG TACGATGCTCTGGAGGTCTTTGCCGGGTCTGGAACCTCGGGTCAGCGGCTCGGACGCTTC TGCGGAACCTTCCGGCCGGCGCCCTTAGTCGCCCCTGGCAACCAGGTGACCCTGAGGATG ACATCGGACGAGGGCACGGGAGGACGAGGCTTCCTGCTCTGGTACAGCGGGCGGGCCACC TCCGGCACTGAGCACCAATTTTGCGGGGGGCGGCTGGAGAAGGCCCAGGGAACCCTGACC ACGCCCAACTGGCCCGAGTCCGATTACCCCCCGGGCATCAGCTGTTCCTGGCACATCATC GCGCCCCCGGACCAGGTGATCTCACTGACCTTCGGGAAGTTTGATCTGGAGCCCGACTCC TACTGCCGCTACGACTCGGTCAGCGTGTTCAACGGAGCCGTGAGCGACGACGCCAAGCGA CTGGGGAAGTTCTGCGGCGACAAGGCCCCAGGCCCCATCTCCTCCGAAGGGAACGAGCTC CTCGTCCAATTCGTCTCGGACCTCAGCGTCACGGCCGACGGCTTCTCGGCCTCCTACAGG ACCCTGCCGCGGGGCGCCACCGAGAAAGCGCCAGCCCAGAGCCCGGGGGAGGACGCCCGG CCAAGTCCCCCGCTCCTCGGCCCAGGCCCCAAGCCCGGAGCCGGGCCCAAAGTCAAGCCT GAACTCCCACCTGAGGAGAAACCGAAGGCCGCGCCCAAGGCGGAGGCAACTCCGGCGGGC TCCGATGGACCCAGTGTCCCCTGCCCAAAGCAGTGCCGAAGGACAGGCACGTTGCAGAGC AACTTCTGTAACAGCAACCTGGTGGTGACGGCAACAGTGAAGTCCATGGTTCGGGGCCCT GGGGAGGGCCTCACAGTCACCGTCAGTCTCATTGGTGTTTACAAAACCGGAGGCCTGGAC CTGCCCTCTCCACCCACTGACACTTCCCTGAAGTTTTATGCACCCTGCAAGCAGTGTCCC CCCATGAAGAAAGGAACCAGTTATCTGATGATGGGCCAGGTGGACGAGAACAGAGGTCCC ATCCTTCCTCCAGAGAGCTTCGTGGTTCTCTACCGGCCCAACCAGGACCAGATCCTCACC AACCTCGCCAAGAGGAGGTGCCCTTCCCAGCCTGTTCAGGCTGCTGAGTCCCAGGCCTGA GCCCTAGGCACCCCTTTCTTATCCAAATAAATGTTTCTTGACTGAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1332-1489, - strand, RNAz p=0.661538 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1332-1489, - strand, RNAz p=0.661538 |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 1-182, gnl|bosTau2|chr25 (32368729-32368533) | |
| 1-182, gnl|Hg17|chr7 (99844634-99844825) | |
| 1-182, gnl|Mm7|chr5 (136529413-136529239) | |
| 291-550, gnl|bosTau2|chr25 (32367192-32366933) | |
| 291-550, gnl|canFam2|chr6 (12095307-12095024) | |
| 291-550, gnl|danRer3|chrNA (156784428-156784170) | |
| 291-550, gnl|dasNov1|scaffold_68796 (8781-8499) | |
| 291-550, gnl|echTel1|scaffold_230290 (752-1052) | |
| 291-550, gnl|fr1|chrUn (11405186-11405460) | |
| 291-550, gnl|hg17|chr7 (99846219-99846502) | |
| 291-550, gnl|Hg17|chr7 (99846232-99846491) | |
| 291-550, gnl|loxAfr1|scaffold_90229 (4535-4817) | |
| 291-550, gnl|mm7|chr5 (136527164-136526886) | |
| 291-550, gnl|Mm7|chr5 (136527152-136526893) | |
| 291-550, gnl|monDom2|scaffold_66 (2461918-2462202) | |
| 291-550, gnl|oryCun1|scaffold_211692 (13914-14150) | |
| 291-550, gnl|panTro1|chr6 (101620977-101621260) | |
| 291-550, gnl|rheMac2|chr3 (47786185-47786468) | |
| 291-550, gnl|rn3|chr12 (19666364-19666086) | |
| 291-550, gnl|tetNig1|chrUn_random (26619639-26619357) | |
| 291-550, gnl|xenTro1|scaffold_1396 (36727-37012) | |
| 663-812, gnl|bosTau2|chr25 (32365441-32365292) | |
| 663-812, gnl|Hg17|chr7 (99847938-99848086) | |
| 663-812, gnl|Mm7|chr5 (136525551-136525410) | |
| 815-934, gnl|bosTau2|chr25 (32364948-32364829) | |
| 815-934, gnl|canFam2|chr6 (12093078-12092938) | |
| 815-934, gnl|danRer3|chrNA (156778799-156778699) | |
| 815-934, gnl|dasNov1|scaffold_68796 (6737-6595) | |
| 815-934, gnl|echTel1|scaffold_230290 (2823-2953) | |
| 815-934, gnl|fr1|chrUn (11406502-11406631) | |
| 815-934, gnl|hg17|chr7 (99848687-99848814) | |
| 815-934, gnl|Hg17|chr7 (99848692-99848811) | |
| 815-934, gnl|loxAfr1|scaffold_6966 (104073-104215) | |
| 815-934, gnl|mm7|chr5 (136525114-136524974) | |
| 815-934, gnl|Mm7|chr5 (136525107-136524976) | |
| 815-934, gnl|monDom2|scaffold_66 (2463943-2464076) | |
| 815-934, gnl|panTro1|chr6 (101623445-101623572) | |
| 815-934, gnl|rheMac2|chr3 (47788982-47789109) | |
| 815-934, gnl|rn3|chr12 (19664099-19663959) | |
| 815-934, gnl|tetNig1|chrUn_random (26618315-26618206) | |
| 815-934, gnl|xenTro1|scaffold_1396 (38593-38704) | |
| 977-1087, gnl|bosTau2|chr25 (32364822-32364712) | |
| 977-1087, gnl|Hg17|chr7 (99848814-99848907) | |
| 977-1087, gnl|Mm7|chr5 (136524969-136524826) | |
| 1332-1513, gnl|bosTau2|chr25 (32363949-32363770) | |
| 1332-1513, gnl|Hg17|chr7 (99850209-99850391) | |
| 1332-1513, gnl|Mm7|chr5 (136523321-136523145) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-182, gnl|bosTau2|chr25 (32368729-32368533) | |
| 1-182, gnl|Hg17|chr7 (99844634-99844825) | |
| 1-182, gnl|Mm7|chr5 (136529413-136529239) | |
| 291-550, gnl|bosTau2|chr25 (32367192-32366933) | |
| 291-550, gnl|canFam2|chr6 (12095307-12095024) | |
| 291-550, gnl|danRer3|chrNA (156784428-156784170) | |
| 291-550, gnl|dasNov1|scaffold_68796 (8781-8499) | |
| 291-550, gnl|echTel1|scaffold_230290 (752-1052) | |
| 291-550, gnl|fr1|chrUn (11405186-11405460) | |
| 291-550, gnl|hg17|chr7 (99846219-99846502) | |
| 291-550, gnl|Hg17|chr7 (99846232-99846491) | |
| 291-550, gnl|loxAfr1|scaffold_90229 (4535-4817) | |
| 291-550, gnl|mm7|chr5 (136527164-136526886) | |
| 291-550, gnl|Mm7|chr5 (136527152-136526893) | |
| 291-550, gnl|monDom2|scaffold_66 (2461918-2462202) | |
| 291-550, gnl|oryCun1|scaffold_211692 (13914-14150) | |
| 291-550, gnl|panTro1|chr6 (101620977-101621260) | |
| 291-550, gnl|rheMac2|chr3 (47786185-47786468) | |
| 291-550, gnl|rn3|chr12 (19666364-19666086) | |
| 291-550, gnl|tetNig1|chrUn_random (26619639-26619357) | |
| 291-550, gnl|xenTro1|scaffold_1396 (36727-37012) | |
| 663-812, gnl|bosTau2|chr25 (32365441-32365292) | |
| 663-812, gnl|Hg17|chr7 (99847938-99848086) | |
| 663-812, gnl|Mm7|chr5 (136525551-136525410) | |
| 815-934, gnl|bosTau2|chr25 (32364948-32364829) | |
| 815-934, gnl|canFam2|chr6 (12093078-12092938) | |
| 815-934, gnl|danRer3|chrNA (156778799-156778699) | |
| 815-934, gnl|dasNov1|scaffold_68796 (6737-6595) | |
| 815-934, gnl|echTel1|scaffold_230290 (2823-2953) | |
| 815-934, gnl|fr1|chrUn (11406502-11406631) | |
| 815-934, gnl|hg17|chr7 (99848687-99848814) | |
| 815-934, gnl|Hg17|chr7 (99848692-99848811) | |
| 815-934, gnl|loxAfr1|scaffold_6966 (104073-104215) | |
| 815-934, gnl|mm7|chr5 (136525114-136524974) | |
| 815-934, gnl|Mm7|chr5 (136525107-136524976) | |
| 815-934, gnl|monDom2|scaffold_66 (2463943-2464076) | |
| 815-934, gnl|panTro1|chr6 (101623445-101623572) | |
| 815-934, gnl|rheMac2|chr3 (47788982-47789109) | |
| 815-934, gnl|rn3|chr12 (19664099-19663959) | |
| 815-934, gnl|tetNig1|chrUn_random (26618315-26618206) | |
| 815-934, gnl|xenTro1|scaffold_1396 (38593-38704) | |
| 977-1087, gnl|bosTau2|chr25 (32364822-32364712) | |
| 977-1087, gnl|Hg17|chr7 (99848814-99848907) | |
| 977-1087, gnl|Mm7|chr5 (136524969-136524826) | |
| 1332-1513, gnl|bosTau2|chr25 (32363949-32363770) | |
| 1332-1513, gnl|Hg17|chr7 (99850209-99850391) | |
| 1332-1513, gnl|Mm7|chr5 (136523321-136523145) |
| Expressed library(ies): 33 entry(ies) | More info |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
| jca (2.73504) | |
| amn (1.67084) | |
| eru (1.32053) | |
| nep (1.10355) | |
| ese (0.885516) | |
| elu (0.770713) | |
| cov (0.660764) | |
| nms (0.641574) | |
| nbm (0.595948) | |
| med (0.465008) | |
| hyp (0.42851) | |
| eep (0.367692) | |
| cly (0.361925) | |
| ebs (0.354904) | |
| cag (0.302389) | |
| eje (0.296501) | |
| pty (0.285429) | |
| cga (0.279096) | |
| nca (0.273748) | |
| mas (0.210305) | |
| nlu (0.191681) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cut (0.169924) | |
| cli (0.152812) | |
| eli (0.151814) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| clu (0.119646) |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jca (2.73504) | |
| amn (1.67084) | |
| eru (1.32053) | |
| nep (1.10355) | |
| ese (0.885516) | |
| elu (0.770713) | |
| cov (0.660764) | |
| nms (0.641574) | |
| nbm (0.595948) | |
| med (0.465008) | |
| hyp (0.42851) | |
| eep (0.367692) | |
| cly (0.361925) | |
| ebs (0.354904) | |
| cag (0.302389) | |
| eje (0.296501) | |
| pty (0.285429) | |
| cga (0.279096) | |
| nca (0.273748) | |
| mas (0.210305) | |
| nlu (0.191681) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cut (0.169924) | |
| cli (0.152812) | |
| eli (0.151814) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| clu (0.119646) |