Non-Coding RNA Search

Ss1.1-Pig4-TMW8063C17.3

Sequence:


               
               ATCAAAGAATCACTCTGGCCTTTCCTCATTGACAAGAGATGGAGACAAACAGTTTTTCAT
TAGTGTATGTGTGACTGGAGTTTTTTTTTTTTTTTTTTTTTAATGAGAAGTTAAGTATGT
GGCACTTTTTAAAAAAAAAAGGAAATAGTTTTGTATGAGTGCTCTTTAATTGTGACTCAT
GATCTTTCAGGTAAATGATGCTCTTGCACTAGTGAAATTGTCTAAGAAAACTAAGGGCAA
TAAATGCCTTGTTTGAAGTAATGATTTTTCTGTCCATTTTGTTCTGGCTTACCTTGCTCT
TGAATATAGTAAATTATGATTCTTAAATATTTGAAAGCCAGGATGAAACAGATCTGCTGT
AGTCTTTTTTTTTTTTGGATGAAATGCATTGTTCATTCCTATAAGTAACCTCTACATTTT
CAGGACTTTTGCAACTGTTGATCCTTTTATGTTTTAAAGTGCGTTAAATGGTATAAAAAT
CATTGGTGTTCATTATTTGCTTTGCTTGAGCTCAGATCAAAATGTTTGAAGAAAGATACT
TTATTTTTGCAACTTAAGTGCAGTTTTTATGCTTGAGATATTTCAGCGTGTTATGTATAT
TGGAACTCCTGCAGCTTGATGCCTCCTGCTTTTTGTAGCAGTGTATGGTGAGCAGTTGAG
AGAGAGTATGTATGTGTATGTATTTTTTTAATATATATAAAACTGTCCTTTTCACTCCAT
GTCACTAAGTGGTATTTCATATGTGCAGTTATAGTAATGGGCCTTGTAAGTCTTTTGACC
ATTCATAAATAATAATAAATATATACTGCTGGCATGAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCAAAGAATCACTCTGGCCTTTCCTCATTGACAAGAGATGGAGACAAACAGTTTTTCAT
TAGTGTATGTGTGACTGGAGTTTTTTTTTTTTTTTTTTTTTAATGAGAAGTTAAGTATGT
GGCACTTTTTAAAAAAAAAAGGAAATAGTTTTGTATGAGTGCTCTTTAATTGTGACTCAT
GATCTTTCAGGTAAATGATGCTCTTGCACTAGTGAAATTGTCTAAGAAAACTAAGGGCAA
TAAATGCCTTGTTTGAAGTAATGATTTTTCTGTCCATTTTGTTCTGGCTTACCTTGCTCT
TGAATATAGTAAATTATGATTCTTAAATATTTGAAAGCCAGGATGAAACAGATCTGCTGT
AGTCTTTTTTTTTTTTGGATGAAATGCATTGTTCATTCCTATAAGTAACCTCTACATTTT
CAGGACTTTTGCAACTGTTGATCCTTTTATGTTTTAAAGTGCGTTAAATGGTATAAAAAT
CATTGGTGTTCATTATTTGCTTTGCTTGAGCTCAGATCAAAATGTTTGAAGAAAGATACT
TTATTTTTGCAACTTAAGTGCAGTTTTTATGCTTGAGATATTTCAGCGTGTTATGTATAT
TGGAACTCCTGCAGCTTGATGCCTCCTGCTTTTTGTAGCAGTGTATGGTGAGCAGTTGAG
AGAGAGTATGTATGTGTATGTATTTTTTTAATATATATAAAACTGTCCTTTTCACTCCAT
GTCACTAAGTGGTATTTCATATGTGCAGTTATAGTAATGGGCCTTGTAAGTCTTTTGACC
ATTCATAAATAATAATAAATATATACTGCTGGCATGAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-843, gnl|bosTau2|chr5 (54866831-54865972)
               

               
               1-843, gnl|Hg17|chr5 (162877885-162878741)
               

               
               1-843, gnl|Mm7|chr11 (40622943-40622166)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-843, gnl|bosTau2|chr5 (54866831-54865972)
               

               
               1-843, gnl|Hg17|chr5 (162877885-162878741)
               

               
               1-843, gnl|Mm7|chr11 (40622943-40622166)

Expressed library(ies): 29 entry(ies)

More info

Expressed library(ies): 29 entry(ies)

Help | Less info


               
               mgm (0.901713)
               

               
               sin (0.874738)
               

               
               rec (0.692281)
               

               
               sag (0.548145)
               

               
               lyg (0.532411)
               

               
               pro (0.512033)
               

               
               mga (0.480615)
               

               
               bfe (0.449573)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               isp (0.300752)
               

               
               ova (0.258264)
               

               
               cbe (0.239234)
               

               
               jca (0.22792)
               

               
               col (0.195008)
               

               
               ldo (0.194005)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

Expressed library(ies): 29 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgm (0.901713)
               

               
               sin (0.874738)
               

               
               rec (0.692281)
               

               
               sag (0.548145)
               

               
               lyg (0.532411)
               

               
               pro (0.512033)
               

               
               mga (0.480615)
               

               
               bfe (0.449573)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               isp (0.300752)
               

               
               ova (0.258264)
               

               
               cbe (0.239234)
               

               
               jca (0.22792)
               

               
               col (0.195008)
               

               
               ldo (0.194005)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

	1-843, gnl\|bosTau2\|chr5 (54866831-54865972)
	1-843, gnl\|Hg17\|chr5 (162877885-162878741)
	1-843, gnl\|Mm7\|chr11 (40622943-40622166)

	mgm (0.901713)
	sin (0.874738)
	rec (0.692281)
	sag (0.548145)
	lyg (0.532411)
	pro (0.512033)
	mga (0.480615)
	bfe (0.449573)
	vin (0.332557)
	fco (0.314416)
	isp (0.300752)
	ova (0.258264)
	cbe (0.239234)
	jca (0.22792)
	col (0.195008)
	ldo (0.194005)
	ton (0.1755)
	fhi (0.169578)
	nje (0.16592)
	ski (0.146735)
	pty (0.142714)
	lnt (0.142308)
	csk (0.140746)
	ste (0.135208)
	kid (0.129735)
	thg (0.126791)
	ese (0.126502)
	tra (0.123092)
	spc (0.113366)