Ss1.1-Pig4-TMW8063C18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCAGCCAGTTAGCTCTCCACCTGCCCATCTGTCTGTCCCCAGAGCCATGGAGAGAGCCA GTGTGATCCAGAAGGCCAAGTTGGCCGAGCAGGCTGAACGCTATGAGGACATGGCAGCCT TCATGAAGAGCGCCGTGGAAAAGGGTGAGGAGCTGTCTTGCGAAGAGCGCAACCTGCTCT CAGTGGCCTACAAGAATGTGGTGGGTGGTCAGCGGGCTGCGTGGAGGGTCCTGTCCAGTA TTGAGCAGAAGAGCAATGAGGAAGGCTCGGAAGAGAAGGGCCCTGAGGTGCGAGAATATC GGGAGAAGGTGGAGAAGGAGCTCCGGGGTGTGTGTGACACGGTGCTTGGCTTGCTGAACA CCCATCTCATCAAGGAGGCCGGTGACGCGGAGAGTCGGGTCTTCTACCTGAAAATGAAGG GTGACTACTACCGTTACCTGGCCGAGGTGGCCACGGGGGACGACAAGAAGCGCATCATCG ACTCAGCCCGCTCCGCCTACCAGGAGGCCATGGACATCAGCAAGAAAGAGATGCCACCCA CCAACCCCATCCGCCTGGGCCTGGCCCTGAACTTTTCTGTCTTCCACTATGAGATCGCCA ACAGCCCAGAGGAGGCCATCTCCCTGGCCAAGACCACCTTCGACGAGGCCATGGCTGACC TGCACACTCTCAGCGAGGACTCCTACAAAGACAGCACCCTCATCATGCAGCTGCTGCGGG ACAACCTGACGCTGTGGACCGCCGACAACGCCGGGGAAGAGGGGGGCGAGGCGCCTGAGG AGCCCCAGAGCTGAGCCGCACCCGCCGCCCTCCCTGGAGAGAGCGAGATGCTCCAGTCCC CCACTCTTGGCAGAGTGTGTGTGCGCGCCTGCGCAGGCCCAACCCTTCTCCCCAGATGCC CTGCCCCAGCTCAAAAAGGCTCCACGGAGAGGAACCAGCAGAGCTGAGGCCACCTGGAGC CGGAGGATTCCAAGCTTCCTGCAGCTGTCAGGTGCTCCGACCACTGGTCGTCCCACCCTG ACCCGCTCTCTGCACCCCGCCCAGACCCCTCCCCTGAGCCCAGCCACTTCCTCCTGATTC CCCGCTCCTGCCCCCCTGCCTCTGGATCTTAGGAATTGAGGAGTGTCCCACCCTTGTGGC TGAGAGCTGAACTGTGTGGCAGAGACTGTAGATGAGAGAGAGCGAGAGCGAGAGAGCGCG CGCGAGCGCTAGAGTGTGTGTGCGCGCCTGCGCAGCCAACAAGACCGAGGATGAGAGGGA AATCATGTCTGCTGGGTGTGACCATGTTTCCTCTCAATAAAGTTCCCCTGTGACAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCAGCCAGTTAGCTCTCCACCTGCCCATCTGTCTGTCCCCAGAGCCATGGAGAGAGCCA GTGTGATCCAGAAGGCCAAGTTGGCCGAGCAGGCTGAACGCTATGAGGACATGGCAGCCT TCATGAAGAGCGCCGTGGAAAAGGGTGAGGAGCTGTCTTGCGAAGAGCGCAACCTGCTCT CAGTGGCCTACAAGAATGTGGTGGGTGGTCAGCGGGCTGCGTGGAGGGTCCTGTCCAGTA TTGAGCAGAAGAGCAATGAGGAAGGCTCGGAAGAGAAGGGCCCTGAGGTGCGAGAATATC GGGAGAAGGTGGAGAAGGAGCTCCGGGGTGTGTGTGACACGGTGCTTGGCTTGCTGAACA CCCATCTCATCAAGGAGGCCGGTGACGCGGAGAGTCGGGTCTTCTACCTGAAAATGAAGG GTGACTACTACCGTTACCTGGCCGAGGTGGCCACGGGGGACGACAAGAAGCGCATCATCG ACTCAGCCCGCTCCGCCTACCAGGAGGCCATGGACATCAGCAAGAAAGAGATGCCACCCA CCAACCCCATCCGCCTGGGCCTGGCCCTGAACTTTTCTGTCTTCCACTATGAGATCGCCA ACAGCCCAGAGGAGGCCATCTCCCTGGCCAAGACCACCTTCGACGAGGCCATGGCTGACC TGCACACTCTCAGCGAGGACTCCTACAAAGACAGCACCCTCATCATGCAGCTGCTGCGGG ACAACCTGACGCTGTGGACCGCCGACAACGCCGGGGAAGAGGGGGGCGAGGCGCCTGAGG AGCCCCAGAGCTGAGCCGCACCCGCCGCCCTCCCTGGAGAGAGCGAGATGCTCCAGTCCC CCACTCTTGGCAGAGTGTGTGTGCGCGCCTGCGCAGGCCCAACCCTTCTCCCCAGATGCC CTGCCCCAGCTCAAAAAGGCTCCACGGAGAGGAACCAGCAGAGCTGAGGCCACCTGGAGC CGGAGGATTCCAAGCTTCCTGCAGCTGTCAGGTGCTCCGACCACTGGTCGTCCCACCCTG ACCCGCTCTCTGCACCCCGCCCAGACCCCTCCCCTGAGCCCAGCCACTTCCTCCTGATTC CCCGCTCCTGCCCCCCTGCCTCTGGATCTTAGGAATTGAGGAGTGTCCCACCCTTGTGGC TGAGAGCTGAACTGTGTGGCAGAGACTGTAGATGAGAGAGAGCGAGAGCGAGAGAGCGCG CGCGAGCGCTAGAGTGTGTGTGCGCGCCTGCGCAGCCAACAAGACCGAGGATGAGAGGGA AATCATGTCTGCTGGGTGTGACCATGTTTCCTCTCAATAAAGTTCCCCTGTGACAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 40-199, - strand, RNAz p=0.791824 | |
| 67-359, - strand, RNAz p=0.904574 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 40-199, - strand, RNAz p=0.791824 | |
| 67-359, - strand, RNAz p=0.904574 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 1-1315, gnl|bosTau2|chr2 (79462389-79461065) | |
| 1-1315, gnl|Hg17|chr1 (26873804-26875086) | |
| 1-1315, gnl|Mm7|chr4 (132980242-132978992) | |
| 30-760, gnl|bosTau2|chr29 (23119180-23118459) | |
| 30-760, gnl|Hg17|chr4 (165211269-165211981) | |
| 30-760, gnl|Mm7|chr2 (66793801-66795296) | |
| 46-346, gnl|bosTau2|chr11 (68309327-68309621) | |
| 46-346, gnl|Hg17|chr2 (9721181-9720887) | |
| 46-346, gnl|Mm7|chr12 (19776498-19776204) | |
| 387-739, gnl|bosTau2|chr16 (824935-824584) | |
| 387-739, gnl|Hg17|chr2 (127031639-127031289) | |
| 387-739, gnl|Mm7|chr3 (92795796-92796148) | |
| 495-634, gnl|bosTau2|chr11 (68336862-68337001) | |
| 495-634, gnl|canFam2|chr17 (9636934-9637120) | |
| 495-634, gnl|danRer3|chr20 (36800273-36800472) | |
| 495-634, gnl|dasNov1|scaffold_13187 (42567-42731) | |
| 495-634, gnl|echTel1|scaffold_290334 (33939-34142) | |
| 495-634, gnl|fr1|chrUn (134354687-134354513) | |
| 495-634, gnl|galGal2|chr3 (94531091-94531273) | |
| 495-634, gnl|hg17|chr2 (9678883-9679079) | |
| 495-634, gnl|Hg17|chr2 (9679032-9678893) | |
| 495-634, gnl|loxAfr1|scaffold_10725 (42556-42748) | |
| 495-634, gnl|mm7|chr12 (19755678-19755874) | |
| 495-634, gnl|Mm7|chr12 (19755827-19755688) | |
| 495-634, gnl|monDom2|scaffold_1 (127372404-127372596) | |
| 495-634, gnl|oryCun1|scaffold_182255 (67066-67259) | |
| 495-634, gnl|panTro1|chr12 (10327875-10328071) | |
| 495-634, gnl|rheMac2|chr5 (109582222-109582058) | |
| 495-634, gnl|rn3|chr6 (41953778-41953972) | |
| 495-634, gnl|tetNig1|chr9 (6333152-6332962) | |
| 495-634, gnl|xenTro1|scaffold_469 (7842-8023) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-1315, gnl|bosTau2|chr2 (79462389-79461065) | |
| 1-1315, gnl|Hg17|chr1 (26873804-26875086) | |
| 1-1315, gnl|Mm7|chr4 (132980242-132978992) | |
| 30-760, gnl|bosTau2|chr29 (23119180-23118459) | |
| 30-760, gnl|Hg17|chr4 (165211269-165211981) | |
| 30-760, gnl|Mm7|chr2 (66793801-66795296) | |
| 46-346, gnl|bosTau2|chr11 (68309327-68309621) | |
| 46-346, gnl|Hg17|chr2 (9721181-9720887) | |
| 46-346, gnl|Mm7|chr12 (19776498-19776204) | |
| 387-739, gnl|bosTau2|chr16 (824935-824584) | |
| 387-739, gnl|Hg17|chr2 (127031639-127031289) | |
| 387-739, gnl|Mm7|chr3 (92795796-92796148) | |
| 495-634, gnl|bosTau2|chr11 (68336862-68337001) | |
| 495-634, gnl|canFam2|chr17 (9636934-9637120) | |
| 495-634, gnl|danRer3|chr20 (36800273-36800472) | |
| 495-634, gnl|dasNov1|scaffold_13187 (42567-42731) | |
| 495-634, gnl|echTel1|scaffold_290334 (33939-34142) | |
| 495-634, gnl|fr1|chrUn (134354687-134354513) | |
| 495-634, gnl|galGal2|chr3 (94531091-94531273) | |
| 495-634, gnl|hg17|chr2 (9678883-9679079) | |
| 495-634, gnl|Hg17|chr2 (9679032-9678893) | |
| 495-634, gnl|loxAfr1|scaffold_10725 (42556-42748) | |
| 495-634, gnl|mm7|chr12 (19755678-19755874) | |
| 495-634, gnl|Mm7|chr12 (19755827-19755688) | |
| 495-634, gnl|monDom2|scaffold_1 (127372404-127372596) | |
| 495-634, gnl|oryCun1|scaffold_182255 (67066-67259) | |
| 495-634, gnl|panTro1|chr12 (10327875-10328071) | |
| 495-634, gnl|rheMac2|chr5 (109582222-109582058) | |
| 495-634, gnl|rn3|chr6 (41953778-41953972) | |
| 495-634, gnl|tetNig1|chr9 (6333152-6332962) | |
| 495-634, gnl|xenTro1|scaffold_469 (7842-8023) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| ton (1.5795) | |
| nep (1.10355) | |
| amn (0.417711) | |
| eep (0.245128) | |
| med (0.232504) | |
| col (0.195008) | |
| eye (0.170503) | |
| csk (0.140746) | |
| jej (0.0989218) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ton (1.5795) | |
| nep (1.10355) | |
| amn (0.417711) | |
| eep (0.245128) | |
| med (0.232504) | |
| col (0.195008) | |
| eye (0.170503) | |
| csk (0.140746) | |
| jej (0.0989218) |