Ss1.1-Pig4-TMW8063D11.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTACCCCACCATCTGCTATTTTGAGAAAGGACGGTTTCTGTTCCAGTATGACAGCTATG GGTCCACAGCTGAGGACATCGTGGAGTGGCTGAAGAATCCACAGCCGCCACAGCCCCAGG TCCCCGAGACTCCCTGGGCAGATGAGGGCGGCTCCGTTTATCACCTGACCGATGAAGACT TTGACCAGTTTGTGAAGGAACACTCCTCTGTGCTCGTCATGTTCCACGCCCCATGGTGTG GACACTGTAAGAAAATGAAGCCAGAGTTTGAGAATGCCGCAGAAGTCCTCCATGGAGAAG CAGACAGCTCTGGTGTCCTTGCAGCTGTCGATGCCACCGTCCACAAGGCCCTGGCAGAAA GATTCCACATCTCCGAGTTTCCTACACTCAAGTATTTTAAGAATGGAGAGAAGTATGCAG TGCCCGCGCTCAGGACAAAGAAGAACTTTGTTGAGTGGATGCGGAACCCCGAGGCCCCTC CACCCCCAGACCCCACCTGGGAAGAGCAGCAGACCAGCGTGTTGCATCTGTCTGGGGACA ACTTCCGGGAGACCCTGAAGAGGAAGAAGCACACCTTGGTCATGTTCTATGCCCCTTGGT GCCCACACTGCAAGAAGGTCATTCCACACTTTACTGCCACTGCTGATGTCTTCAAAGATG ACCGAAAGATTGCCTGCGCTGCCGTTGATTGCATCAAAGAGAAGAACCAGGATTTGTGCC AGCAGGAGGCCGTCAAGGCCTACCCGACGTTCCACTACTACCACTACGGGAAGCTGGCGG AAAAGTATGACAGCGATCGGACGGAATTGGGATTTACCAGTTTCATTCGGACGCTCCGGG AGGGAGACCATGAGAGACTAGGAAAGAAGAAGGAAGAGTTGTAATTTCTGCCTCAGAGGA AGCTTTTCCATTACACTGTGAACGATATACCTGTTTTGTTCTTTTTGAATTTCCGTGTGT TCTGAAGACGAAGTTTTTTATAGCCGCTAATGGCCGTTTTGTACACTTTTGAAATAAAAT TAAACCAGTTGTAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTACCCCACCATCTGCTATTTTGAGAAAGGACGGTTTCTGTTCCAGTATGACAGCTATG GGTCCACAGCTGAGGACATCGTGGAGTGGCTGAAGAATCCACAGCCGCCACAGCCCCAGG TCCCCGAGACTCCCTGGGCAGATGAGGGCGGCTCCGTTTATCACCTGACCGATGAAGACT TTGACCAGTTTGTGAAGGAACACTCCTCTGTGCTCGTCATGTTCCACGCCCCATGGTGTG GACACTGTAAGAAAATGAAGCCAGAGTTTGAGAATGCCGCAGAAGTCCTCCATGGAGAAG CAGACAGCTCTGGTGTCCTTGCAGCTGTCGATGCCACCGTCCACAAGGCCCTGGCAGAAA GATTCCACATCTCCGAGTTTCCTACACTCAAGTATTTTAAGAATGGAGAGAAGTATGCAG TGCCCGCGCTCAGGACAAAGAAGAACTTTGTTGAGTGGATGCGGAACCCCGAGGCCCCTC CACCCCCAGACCCCACCTGGGAAGAGCAGCAGACCAGCGTGTTGCATCTGTCTGGGGACA ACTTCCGGGAGACCCTGAAGAGGAAGAAGCACACCTTGGTCATGTTCTATGCCCCTTGGT GCCCACACTGCAAGAAGGTCATTCCACACTTTACTGCCACTGCTGATGTCTTCAAAGATG ACCGAAAGATTGCCTGCGCTGCCGTTGATTGCATCAAAGAGAAGAACCAGGATTTGTGCC AGCAGGAGGCCGTCAAGGCCTACCCGACGTTCCACTACTACCACTACGGGAAGCTGGCGG AAAAGTATGACAGCGATCGGACGGAATTGGGATTTACCAGTTTCATTCGGACGCTCCGGG AGGGAGACCATGAGAGACTAGGAAAGAAGAAGGAAGAGTTGTAATTTCTGCCTCAGAGGA AGCTTTTCCATTACACTGTGAACGATATACCTGTTTTGTTCTTTTTGAATTTCCGTGTGT TCTGAAGACGAAGTTTTTTATAGCCGCTAATGGCCGTTTTGTACACTTTTGAAATAAAAT TAAACCAGTTGTAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 98-242, gnl|bosTau2|chr1 (35182335-35182190) | |
| 98-242, gnl|Hg17|chr3 (124332017-124332162) | |
| 98-242, gnl|Mm7|chr16 (35097620-35097475) | |
| 306-466, gnl|bosTau2|chr1 (41521269-41521429) | |
| 306-466, gnl|canFam2|chr33 (29253222-29253415) | |
| 306-466, gnl|danRer3|chr9 (35159364-35159551) | |
| 306-466, gnl|echTel1|scaffold_116235 (660-850) | |
| 306-466, gnl|fr1|chrUn (158740141-158739938) | |
| 306-466, gnl|galGal2|chr7 (27578061-27578247) | |
| 306-466, gnl|hg17|chr3 (124347622-124347815) | |
| 306-466, gnl|Hg17|chr3 (124347636-124347796) | |
| 306-466, gnl|loxAfr1|scaffold_5215 (42077-41884) | |
| 306-466, gnl|mm7|chr16 (35085088-35084882) | |
| 306-466, gnl|Mm7|chr16 (35085072-35084912) | |
| 306-466, gnl|monDom2|scaffold_2642 (1544-1740) | |
| 306-466, gnl|oryCun1|scaffold_200892 (257373-257566) | |
| 306-466, gnl|panTro1|chr2 (126036145-126036338) | |
| 306-466, gnl|rheMac2|chr2 (43131127-43131320) | |
| 306-466, gnl|rn3|chr11 (67249075-67249279) | |
| 306-466, gnl|tetNig1|chr2 (18099839-18099658) | |
| 467-598, gnl|bosTau2|chr1 (41522171-41522302) | |
| 467-598, gnl|canFam2|chr33 (29256602-29256761) | |
| 467-598, gnl|danRer3|chr9 (35164091-35164259) | |
| 467-598, gnl|fr1|chrUn (158739781-158739628) | |
| 467-598, gnl|galGal2|chr7 (27580626-27580776) | |
| 467-598, gnl|hg17|chr3 (124351752-124351910) | |
| 467-598, gnl|Hg17|chr3 (124351771-124351902) | |
| 467-598, gnl|loxAfr1|scaffold_5215 (37346-37187) | |
| 467-598, gnl|mm7|chr16 (35082403-35082245) | |
| 467-598, gnl|Mm7|chr16 (35082382-35082251) | |
| 467-598, gnl|monDom2|scaffold_24 (21088536-21088685) | |
| 467-598, gnl|oryCun1|scaffold_200892 (262082-262238) | |
| 467-598, gnl|panTro1|chr2 (126040281-126040439) | |
| 467-598, gnl|rheMac2|chr2 (43134018-43134176) | |
| 467-598, gnl|rn3|chr11 (67251438-67251596) | |
| 467-598, gnl|tetNig1|chr2 (18099534-18099382) | |
| 803-1032, gnl|bosTau2|chr1 (41535056-41535286) | |
| 803-1032, gnl|Hg17|chr3 (124363416-124363642) | |
| 803-1032, gnl|Mm7|chr16 (35072157-35071929) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 98-242, gnl|bosTau2|chr1 (35182335-35182190) | |
| 98-242, gnl|Hg17|chr3 (124332017-124332162) | |
| 98-242, gnl|Mm7|chr16 (35097620-35097475) | |
| 306-466, gnl|bosTau2|chr1 (41521269-41521429) | |
| 306-466, gnl|canFam2|chr33 (29253222-29253415) | |
| 306-466, gnl|danRer3|chr9 (35159364-35159551) | |
| 306-466, gnl|echTel1|scaffold_116235 (660-850) | |
| 306-466, gnl|fr1|chrUn (158740141-158739938) | |
| 306-466, gnl|galGal2|chr7 (27578061-27578247) | |
| 306-466, gnl|hg17|chr3 (124347622-124347815) | |
| 306-466, gnl|Hg17|chr3 (124347636-124347796) | |
| 306-466, gnl|loxAfr1|scaffold_5215 (42077-41884) | |
| 306-466, gnl|mm7|chr16 (35085088-35084882) | |
| 306-466, gnl|Mm7|chr16 (35085072-35084912) | |
| 306-466, gnl|monDom2|scaffold_2642 (1544-1740) | |
| 306-466, gnl|oryCun1|scaffold_200892 (257373-257566) | |
| 306-466, gnl|panTro1|chr2 (126036145-126036338) | |
| 306-466, gnl|rheMac2|chr2 (43131127-43131320) | |
| 306-466, gnl|rn3|chr11 (67249075-67249279) | |
| 306-466, gnl|tetNig1|chr2 (18099839-18099658) | |
| 467-598, gnl|bosTau2|chr1 (41522171-41522302) | |
| 467-598, gnl|canFam2|chr33 (29256602-29256761) | |
| 467-598, gnl|danRer3|chr9 (35164091-35164259) | |
| 467-598, gnl|fr1|chrUn (158739781-158739628) | |
| 467-598, gnl|galGal2|chr7 (27580626-27580776) | |
| 467-598, gnl|hg17|chr3 (124351752-124351910) | |
| 467-598, gnl|Hg17|chr3 (124351771-124351902) | |
| 467-598, gnl|loxAfr1|scaffold_5215 (37346-37187) | |
| 467-598, gnl|mm7|chr16 (35082403-35082245) | |
| 467-598, gnl|Mm7|chr16 (35082382-35082251) | |
| 467-598, gnl|monDom2|scaffold_24 (21088536-21088685) | |
| 467-598, gnl|oryCun1|scaffold_200892 (262082-262238) | |
| 467-598, gnl|panTro1|chr2 (126040281-126040439) | |
| 467-598, gnl|rheMac2|chr2 (43134018-43134176) | |
| 467-598, gnl|rn3|chr11 (67251438-67251596) | |
| 467-598, gnl|tetNig1|chr2 (18099534-18099382) | |
| 803-1032, gnl|bosTau2|chr1 (41535056-41535286) | |
| 803-1032, gnl|Hg17|chr3 (124363416-124363642) | |
| 803-1032, gnl|Mm7|chr16 (35072157-35071929) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| cje (0.660939) | |
| cut (0.509771) | |
| amn (0.417711) | |
| cte (0.29274) | |
| pty (0.285429) | |
| cst (0.280073) | |
| cki (0.165235) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.660939) | |
| cut (0.509771) | |
| amn (0.417711) | |
| cte (0.29274) | |
| pty (0.285429) | |
| cst (0.280073) | |
| cki (0.165235) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |