Non-Coding RNA Search

Ss1.1-Pig4-TMW8063D20.3

Sequence:


               
               AGGCTGGTCTTGACTTAGTACCATGGGGCCAGCACTCGTGGCTTGGGGTAGGGAGTCTGC
AGGCCTTGGACCTTGGAGGCAGGTGGCGTCCTTGTCCCCAGCCCAGGACAGAAATGTGCC
GTAGCTGCTCTGTCTGTGTCTGATGACCACGAGGGACTCTGTAGCCCCTGCCATTTTAAC
CTCCGGATGGCACGCAGGGAAACGGGTTGGGACAGTGCTTTGGGCCAGACCCTTGGAGGA
GCAGAGCCCCTCCCTAGAGCATCACAACAGCTCCCCTACCTCTGAGCCCAGGGCCCTGGC
CCTTGGCTTCCCTCCCCAGCCCTTCCTCTCCCCTTCCTGGTCCTCCCTTCCTCTCCTGGG
ACCTCCCTACCCCTCCGTGCACAGCCCGGGGTCCCCAGTTCCAGTGCTGGATTTGGGGTG
GTGGTTCCCAAGAGCCGCCTGGTACCTACTGTAAAACTTTCTCTACTGCATGGGCCTCTG
CCTGCCCCTGACTCAGGCTTAGTGTAGACGTTCTGGGCTGGGCTACGTCCGTCTTGCCAT
CTGGGCCTCTCCGGAAGCTGTATCACCCTTGCTCACCACTGCCGAGCCCACACCTCACAG
GGCCTTGCAACCTCTCCTGAAGCCGCTTTGTGGCAAGAACTGTGGATCATAGCCCCCCAA
ATGTGTTTCCACCCCAGCATTCCGAAGACTGAGACACGCCTCCCCTGATGATCTAGAGCC
TAATGGGCTCCTAAGAGGCCATCTCAGAACCCTTGCAGACACTCTTGAGCACACTGCAGC
CCAGTGCAGTTAATTCTGCTGGACCCAGCTGGCCAGACCAGGTTGCTCCCCCTCTGAGCG
CTCATTCTGATGTGGGAGGCGTGCATGAGACAAGAACTCTTGGAGCTACAGGCACCGAGT
TGGGGGAGCCATCATTCCTGGTTGGAATCCAAGAAGACTTCCCGCAGGAGGCGGCATTTC
ACCTGGATCTCAGCCTTAAAGATGGGGAGGATTTGCTTTGTAATTACCAGTTCATTTGTC
TTTGGCTATTAAAGAGAAGTACATGTTCGTTGTAGAGAATTCGGAAATGTAGAAGAATAC
ACAGAAGAAAATAAAAGTCAGCTCTTATCACCTAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCTGGTCTTGACTTAGTACCATGGGGCCAGCACTCGTGGCTTGGGGTAGGGAGTCTGC
AGGCCTTGGACCTTGGAGGCAGGTGGCGTCCTTGTCCCCAGCCCAGGACAGAAATGTGCC
GTAGCTGCTCTGTCTGTGTCTGATGACCACGAGGGACTCTGTAGCCCCTGCCATTTTAAC
CTCCGGATGGCACGCAGGGAAACGGGTTGGGACAGTGCTTTGGGCCAGACCCTTGGAGGA
GCAGAGCCCCTCCCTAGAGCATCACAACAGCTCCCCTACCTCTGAGCCCAGGGCCCTGGC
CCTTGGCTTCCCTCCCCAGCCCTTCCTCTCCCCTTCCTGGTCCTCCCTTCCTCTCCTGGG
ACCTCCCTACCCCTCCGTGCACAGCCCGGGGTCCCCAGTTCCAGTGCTGGATTTGGGGTG
GTGGTTCCCAAGAGCCGCCTGGTACCTACTGTAAAACTTTCTCTACTGCATGGGCCTCTG
CCTGCCCCTGACTCAGGCTTAGTGTAGACGTTCTGGGCTGGGCTACGTCCGTCTTGCCAT
CTGGGCCTCTCCGGAAGCTGTATCACCCTTGCTCACCACTGCCGAGCCCACACCTCACAG
GGCCTTGCAACCTCTCCTGAAGCCGCTTTGTGGCAAGAACTGTGGATCATAGCCCCCCAA
ATGTGTTTCCACCCCAGCATTCCGAAGACTGAGACACGCCTCCCCTGATGATCTAGAGCC
TAATGGGCTCCTAAGAGGCCATCTCAGAACCCTTGCAGACACTCTTGAGCACACTGCAGC
CCAGTGCAGTTAATTCTGCTGGACCCAGCTGGCCAGACCAGGTTGCTCCCCCTCTGAGCG
CTCATTCTGATGTGGGAGGCGTGCATGAGACAAGAACTCTTGGAGCTACAGGCACCGAGT
TGGGGGAGCCATCATTCCTGGTTGGAATCCAAGAAGACTTCCCGCAGGAGGCGGCATTTC
ACCTGGATCTCAGCCTTAAAGATGGGGAGGATTTGCTTTGTAATTACCAGTTCATTTGTC
TTTGGCTATTAAAGAGAAGTACATGTTCGTTGTAGAGAATTCGGAAATGTAGAAGAATAC
ACAGAAGAAAATAAAAGTCAGCTCTTATCACCTAAC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               225-342, - strand, RNAz p=0.997374
               

               
               383-500, - strand, RNAz p=0.762594

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               225-342, - strand, RNAz p=0.997374
               

               
               383-500, - strand, RNAz p=0.762594

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1116, gnl|bosTau2|chr18 (22584135-22585216)
               

               
               1-1116, gnl|Hg17|chr16 (56255278-56256438)
               

               
               1-1116, gnl|Mm7|chr8 (93602281-93603217)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1116, gnl|bosTau2|chr18 (22584135-22585216)
               

               
               1-1116, gnl|Hg17|chr16 (56255278-56256438)
               

               
               1-1116, gnl|Mm7|chr8 (93602281-93603217)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               nms (0.427716)
               

               
               duo (0.345602)
               

               
               hyp (0.285673)
               

               
               ece (0.229305)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               med (0.116252)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.427716)
               

               
               duo (0.345602)
               

               
               hyp (0.285673)
               

               
               ece (0.229305)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               med (0.116252)

	225-342, - strand, RNAz p=0.997374
	383-500, - strand, RNAz p=0.762594

	1-1116, gnl\|bosTau2\|chr18 (22584135-22585216)
	1-1116, gnl\|Hg17\|chr16 (56255278-56256438)
	1-1116, gnl\|Mm7\|chr8 (93602281-93603217)

	nms (0.427716)
	duo (0.345602)
	hyp (0.285673)
	ece (0.229305)
	col (0.195008)
	cmu (0.186393)
	fbs (0.175346)
	eye (0.170503)
	cut (0.169924)
	cag (0.151194)
	spl (0.143184)
	csk (0.140746)
	cst (0.140036)
	che (0.136314)
	ssp (0.13552)
	cov (0.132153)
	ova (0.129132)
	med (0.116252)