Ss1.1-Pig4-TMW8063E16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAACCTCAGTTTTCTCTGGATCTTGATCAGGGCCTTGGAATTGGAGTGTTTCAGAGGCT GTGGAGAGAGCAGGGCAGTGTCCCTGCAGGATGGAGCCCTGGATGTGTGCCCCTGACCCC GTCTGAGCAGGCAGGAGTTGGCGGAGGCCTTCGAGTCTATGCTGCGCTACATCTACTATG GTGAAGTCAACATGCCGCCTGAGGACTCGCTCTACCTGTTTGCAGCACCCTACTACTACG GCTTCTACAACAACCGGCTGCAGGCGTACTGCAAGCAGAACCTGGAAATGAATGTAACGG TGCAGAACGTGCTACAGATCCTAGAGGCAGCGGACAAGACGCAGGCACTTGACATGAAGC GGCATTGCCTCCACATCATCGTGCACCAGTTCACCAAGGTCTCCAAGCTGCCCTCGCTGC GCACGTTGAGCCAGCAGCTGCTGCTAGACATCATCGACTCTCTGGCCTCCCACATCTCTG ACAAGCAGTGTGCAGAGCTGGGCGCTGACATATGAGGGCCCCACAGTGCAACCCTGCCCT GCCTCACTGTAGACTGTGCTGGCCACGCTCAGGCCTGTGGCAGAGGGGCCAGGTGCCCAG GGCCTCCAAAGGGAGTTGAGGGGACATGGAGGGCACCAAGTGCCCCACTTCACGGCTGAG GACAGAGGTCCCACAGGAAGCAGACAGAGAAGCAGCACCTTGGCTGGCACCCTCTCTTGG GGGGGGGGGGAGGCAGAGGTCCTGGGCTGGGCCCAGTGGGGAAGACAAACCTGCCAGGGA GCTGGCTTTGGGCCCTACTGTCGGCAGGTACTTGTGCATCCAGCCACTGGGCCCTGTTGC CAATACCCTTTTAATGTGGGGGCCATACTGCACCCCTGACCCTTGGGGTTGCTGTAAGGC CCTTCCTGCCACCCAGAACTTGTGCCTGGGCAGCACTAATGGCAGGGAGTCTGACTGTAG ATGAATTATGGGCCTGAAGGGCCCCAAGGCTAGCCCCCGGCCTGCAAGGTCAGGCACTCT GGACAGGCCGCACAGATAAGGGCTCTGGGGTCCCACCTGCCTGAGTGTGCAGCATGGCTC TAGGCATGCCAGGGTGAAGTCAGAGGAGGTGCCCCCAGGTCCCTGCCTGTCCCTCACTAA GTCTTTATTGTCACAGGCTCGCTTCCATTAAAACCACAGCAGTGCTACTGACACATTACA CCTTGCCGCGCAGTCCCCACTGGTGGGCTCTAGGCCTAGGTCCTCCTGGAGCTGCAGCCT GATGGTCTGGGATCAGCCTGCCAGCAGCTCCCCACCCTCACTGAGGTGCTCCAGTCTCCT AGGGGTGGGAAGGATGGGCGGAGCGCAGGCCAGCCTCTGGCCTCTCCCCACCCCCCACCC AAGAGGCCTGGGGCCCACAGCCAGCTCTCCTGGCTCCTCTGCTCCTGAGCTGGGAAACTA AGGATAGGCAGAGTCCTTCCTTGTCCCAATGGAAGGTGAAGTCCACTCCAGTGGAGAAGG TACGATTCTGTCTCCCCTCTGGGAGTAAGAACCCTTCTGTCCTGGCTGCCAGGAAGCCAC TTCAGGGAAAATGGTCAGCGCCTTAGTTTCCTGCCTTTGGCTGTGCCTCATCTTATTGGG GCACCTGCCATACCTCAGGCCTTGAGGAGCCCCAGGTGCCAGATGCAGGTGGACATTCTA GGGCAAGGGGAGTTACCTGCAGGCCACCAGCACGCTAGGAGACGCCTCGAGACCTGCCTG TGATCCTGCTCTGCATCTGCCTCTCCCGGGCATGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAACCTCAGTTTTCTCTGGATCTTGATCAGGGCCTTGGAATTGGAGTGTTTCAGAGGCT GTGGAGAGAGCAGGGCAGTGTCCCTGCAGGATGGAGCCCTGGATGTGTGCCCCTGACCCC GTCTGAGCAGGCAGGAGTTGGCGGAGGCCTTCGAGTCTATGCTGCGCTACATCTACTATG GTGAAGTCAACATGCCGCCTGAGGACTCGCTCTACCTGTTTGCAGCACCCTACTACTACG GCTTCTACAACAACCGGCTGCAGGCGTACTGCAAGCAGAACCTGGAAATGAATGTAACGG TGCAGAACGTGCTACAGATCCTAGAGGCAGCGGACAAGACGCAGGCACTTGACATGAAGC GGCATTGCCTCCACATCATCGTGCACCAGTTCACCAAGGTCTCCAAGCTGCCCTCGCTGC GCACGTTGAGCCAGCAGCTGCTGCTAGACATCATCGACTCTCTGGCCTCCCACATCTCTG ACAAGCAGTGTGCAGAGCTGGGCGCTGACATATGAGGGCCCCACAGTGCAACCCTGCCCT GCCTCACTGTAGACTGTGCTGGCCACGCTCAGGCCTGTGGCAGAGGGGCCAGGTGCCCAG GGCCTCCAAAGGGAGTTGAGGGGACATGGAGGGCACCAAGTGCCCCACTTCACGGCTGAG GACAGAGGTCCCACAGGAAGCAGACAGAGAAGCAGCACCTTGGCTGGCACCCTCTCTTGG GGGGGGGGGGAGGCAGAGGTCCTGGGCTGGGCCCAGTGGGGAAGACAAACCTGCCAGGGA GCTGGCTTTGGGCCCTACTGTCGGCAGGTACTTGTGCATCCAGCCACTGGGCCCTGTTGC CAATACCCTTTTAATGTGGGGGCCATACTGCACCCCTGACCCTTGGGGTTGCTGTAAGGC CCTTCCTGCCACCCAGAACTTGTGCCTGGGCAGCACTAATGGCAGGGAGTCTGACTGTAG ATGAATTATGGGCCTGAAGGGCCCCAAGGCTAGCCCCCGGCCTGCAAGGTCAGGCACTCT GGACAGGCCGCACAGATAAGGGCTCTGGGGTCCCACCTGCCTGAGTGTGCAGCATGGCTC TAGGCATGCCAGGGTGAAGTCAGAGGAGGTGCCCCCAGGTCCCTGCCTGTCCCTCACTAA GTCTTTATTGTCACAGGCTCGCTTCCATTAAAACCACAGCAGTGCTACTGACACATTACA CCTTGCCGCGCAGTCCCCACTGGTGGGCTCTAGGCCTAGGTCCTCCTGGAGCTGCAGCCT GATGGTCTGGGATCAGCCTGCCAGCAGCTCCCCACCCTCACTGAGGTGCTCCAGTCTCCT AGGGGTGGGAAGGATGGGCGGAGCGCAGGCCAGCCTCTGGCCTCTCCCCACCCCCCACCC AAGAGGCCTGGGGCCCACAGCCAGCTCTCCTGGCTCCTCTGCTCCTGAGCTGGGAAACTA AGGATAGGCAGAGTCCTTCCTTGTCCCAATGGAAGGTGAAGTCCACTCCAGTGGAGAAGG TACGATTCTGTCTCCCCTCTGGGAGTAAGAACCCTTCTGTCCTGGCTGCCAGGAAGCCAC TTCAGGGAAAATGGTCAGCGCCTTAGTTTCCTGCCTTTGGCTGTGCCTCATCTTATTGGG GCACCTGCCATACCTCAGGCCTTGAGGAGCCCCAGGTGCCAGATGCAGGTGGACATTCTA GGGCAAGGGGAGTTACCTGCAGGCCACCAGCACGCTAGGAGACGCCTCGAGACCTGCCTG TGATCCTGCTCTGCATCTGCCTCTCCCGGGCATGAA |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 212-317, gnl|bosTau2|chr17 (45161693-45161588) | |
| 212-317, gnl|canFam2|chr26 (33569328-33569200) | |
| 212-317, gnl|danRer3|chrNA (72840513-72840388) | |
| 212-317, gnl|dasNov1|scaffold_88531 (4704-4833) | |
| 212-317, gnl|echTel1|scaffold_241278 (3207-3080) | |
| 212-317, gnl|fr1|chrUn (1609594-1609473) | |
| 212-317, gnl|galGal2|chr32 (483271-483160) | |
| 212-317, gnl|hg17|chr22 (19675520-19675648) | |
| 212-317, gnl|Hg17|chr22 (19675539-19675644) | |
| 212-317, gnl|loxAfr1|scaffold_29921 (4490-4617) | |
| 212-317, gnl|mm7|chr16 (17074953-17075081) | |
| 212-317, gnl|Mm7|chr16 (17074972-17075077) | |
| 212-317, gnl|monDom2|scaffold_214 (48189-48061) | |
| 212-317, gnl|oryCun1|scaffold_190802 (3378-3506) | |
| 212-317, gnl|panTro1|chr23 (19639285-19639413) | |
| 212-317, gnl|rheMac2|chr10 (64905382-64905254) | |
| 212-317, gnl|rn3|chr11 (85520865-85520737) | |
| 212-317, gnl|tetNig1|chr12 (6207361-6207251) | |
| 212-317, gnl|xenTro1|scaffold_2 (1916455-1916325) | |
| 397-569, gnl|bosTau2|chr17 (45161204-45161037) | |
| 397-569, gnl|canFam2|chr26 (33568778-33568621) | |
| 397-569, gnl|danRer3|chrNA (72838505-72838366) | |
| 397-569, gnl|dasNov1|scaffold_88531 (5173-5327) | |
| 397-569, gnl|echTel1|scaffold_241278 (2827-2696) | |
| 397-569, gnl|fr1|chrUn (1608928-1608802) | |
| 397-569, gnl|galGal2|chr32 (479601-479467) | |
| 397-569, gnl|hg17|chr22 (19676065-19676211) | |
| 397-569, gnl|Hg17|chr22 (19676073-19676235) | |
| 397-569, gnl|loxAfr1|scaffold_29921 (5006-5159) | |
| 397-569, gnl|mm7|chr16 (17075404-17075534) | |
| 397-569, gnl|monDom2|scaffold_214 (47099-46955) | |
| 397-569, gnl|oryCun1|scaffold_190802 (3754-3897) | |
| 397-569, gnl|panTro1|chr23 (19639892-19640038) | |
| 397-569, gnl|rheMac2|chr10 (64904837-64904691) | |
| 397-569, gnl|rn3|chr11 (85520428-85520283) | |
| 397-569, gnl|tetNig1|chr12 (6206701-6206575) | |
| 397-569, gnl|xenTro1|scaffold_2 (1912612-1912481) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 212-317, gnl|bosTau2|chr17 (45161693-45161588) | |
| 212-317, gnl|canFam2|chr26 (33569328-33569200) | |
| 212-317, gnl|danRer3|chrNA (72840513-72840388) | |
| 212-317, gnl|dasNov1|scaffold_88531 (4704-4833) | |
| 212-317, gnl|echTel1|scaffold_241278 (3207-3080) | |
| 212-317, gnl|fr1|chrUn (1609594-1609473) | |
| 212-317, gnl|galGal2|chr32 (483271-483160) | |
| 212-317, gnl|hg17|chr22 (19675520-19675648) | |
| 212-317, gnl|Hg17|chr22 (19675539-19675644) | |
| 212-317, gnl|loxAfr1|scaffold_29921 (4490-4617) | |
| 212-317, gnl|mm7|chr16 (17074953-17075081) | |
| 212-317, gnl|Mm7|chr16 (17074972-17075077) | |
| 212-317, gnl|monDom2|scaffold_214 (48189-48061) | |
| 212-317, gnl|oryCun1|scaffold_190802 (3378-3506) | |
| 212-317, gnl|panTro1|chr23 (19639285-19639413) | |
| 212-317, gnl|rheMac2|chr10 (64905382-64905254) | |
| 212-317, gnl|rn3|chr11 (85520865-85520737) | |
| 212-317, gnl|tetNig1|chr12 (6207361-6207251) | |
| 212-317, gnl|xenTro1|scaffold_2 (1916455-1916325) | |
| 397-569, gnl|bosTau2|chr17 (45161204-45161037) | |
| 397-569, gnl|canFam2|chr26 (33568778-33568621) | |
| 397-569, gnl|danRer3|chrNA (72838505-72838366) | |
| 397-569, gnl|dasNov1|scaffold_88531 (5173-5327) | |
| 397-569, gnl|echTel1|scaffold_241278 (2827-2696) | |
| 397-569, gnl|fr1|chrUn (1608928-1608802) | |
| 397-569, gnl|galGal2|chr32 (479601-479467) | |
| 397-569, gnl|hg17|chr22 (19676065-19676211) | |
| 397-569, gnl|Hg17|chr22 (19676073-19676235) | |
| 397-569, gnl|loxAfr1|scaffold_29921 (5006-5159) | |
| 397-569, gnl|mm7|chr16 (17075404-17075534) | |
| 397-569, gnl|monDom2|scaffold_214 (47099-46955) | |
| 397-569, gnl|oryCun1|scaffold_190802 (3754-3897) | |
| 397-569, gnl|panTro1|chr23 (19639892-19640038) | |
| 397-569, gnl|rheMac2|chr10 (64904837-64904691) | |
| 397-569, gnl|rn3|chr11 (85520428-85520283) | |
| 397-569, gnl|tetNig1|chr12 (6206701-6206575) | |
| 397-569, gnl|xenTro1|scaffold_2 (1912612-1912481) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| nca (0.273748) | |
| mas (0.210305) | |
| nbm (0.198649) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| eli (0.151814) | |
| pla (0.133672) | |
| cov (0.132153) | |
| ese (0.126502) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| med (0.116252) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nca (0.273748) | |
| mas (0.210305) | |
| nbm (0.198649) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| eli (0.151814) | |
| pla (0.133672) | |
| cov (0.132153) | |
| ese (0.126502) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| med (0.116252) |