Ss1.1-Pig4-TMW8063E19.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACCATGGTGGGCCTGCCGAGCCTCGTCCTGCTCAGCGCCTCCCTGGCTGGCCTTCTGCTT CCAGGGGGAAGTGTGTTCCTCCCCCGCGACCGGGCCCACAGCGTCCTGGAGAGGGCCCGG AGGGCCAACTCGTTTTGGGAGGAGATGAAGAAGGGCAACCTGGAGAGGGAGTGCCTGGAG GAGACCTGCTCCTACGAGGAGGCCCGCGAGGTCTTCGAGGACCAGCAGAAGACGGATGAA TTCTGGAATAAATACAAAGACGGCGACCAGTGTGAAAGCAGCCCTTGCCAGAACCAGGGC AAGTGCAAAGACGGCCTCGGGGAGTACAACTGCACCTGTGCCGAAGGCTTCGAAGGCAAA AACTGTGAATTACGGCTCGTCCCCGAAGGCCCGGCCGTCCACTCAGCGTGGGAGGACCCG GACAGCGCCCTGCTCCGCCGAGAGGCTGCGGAAGGGAGGGCCGTTACCATGGAAACGAGC GCTGCGTCTCCCTCCTTGGAGGAGGCTGTTTGTCCTGGTCCTCGGGGTCCTGGGGTCCCA CCGATGTCGGTGCTGAGTGCGCAGGACTCTCCGAGGACAAAGCGTTGATACAGTTAACTG CACATGGAGCAGTCCCTGAGTTTTCCTAATGCGGTGACTAATTTTTAATAAAAAGTAGGT TAGCATCAATAAGAGGAGGACGAGGACGAGAGCAGCCTGGTCCGGATAGTGGGCGGGCGG GACTGCAGAGAGGGCGAGTGCCCCTGGCAGGCCCTGCTCGTCAACGAGGAAAACGAGGGC TTCTGTGGCGGCACCATCCTGAGCGAGTTCCACGTGCTCACGGCGGCCCACTGCCTCCAC CAGGCCAAGAAATTCAAGGTGAGGGTAGGCGACCGCAACCTGGAGAAGGAGGAGGGCGAC GAGGCAGCGCACGAGGTGGAGGTGACGGTGAAGCACAGCCGCTTCGTCAGGGAGACCTAC GACTTCGACATCGCGGTGCTCAAGCTCAAGACGCCCATCACCTTCCGCACGAACGTGGCC CCCGCCTGCCTGCCCGAGAAGAACTGGGCCGAGGCCACGCTGCTGACCCAGAAGACGGGC ATCGTCAGTGGCTTCGGGCGCACACACGAGCGGGGCCGCCCGTCGTCCACCCTCAAGATG CTGGAGGTGCCCTACGTGGACAGGAACACCTGCAAGCTGTCCAGCAGCTTCCTTATCACC CCCAACATGTTCTGCGCCGGCTACGACGAGCAGCCCGAGGACGCCTGCCAGGGCGACAGC GGCGGCCCCCACGTCACCCGCTTCAGGGACACCTACTTCGTCACCGGCATCGTCAGCTGG GGCGAAGGGTGTGCGCGGAGGGGCAAGTACGGCGTCTACACCAAGGTCACCAACTTCCTC AAGTGGATCGAGCGGTCCATGAGAGCCAGGGCGGAGGCCGGGGCGGAGCCGCACCCCCAG TAAAGGTCTCGCTGCTGCGACCCCTCCCCGAGTGGCTTCTGGCCCCACGGAGGCAGGGAT GGGACTGGGGGTTCCCGGCCGCTCCCCTTCTGGCCGGGGCGGAGGCCTCGTTCAGCCCCC GCCCCGGGGTTTGGGGGCGCAGGGGCGGGGGCTGCCCCCTTCACCACCGGGAGAGGCCAG CTCCCTGGAGAGGGGGGCCGGTTTCCCAGAAACAGTCGAGCTGGGGGGCCCACGTCTGTG TGTCCACCCCTGACGGCCTCAAGGGAACCCTCCTGCAGTCAAGGCCAGGGCCTCTGTCCC CAGCGAGCTGGGGGGGCTCTGCACCAGTGGGAACTCGGGGAGCCGCACAAATAACACCCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACCATGGTGGGCCTGCCGAGCCTCGTCCTGCTCAGCGCCTCCCTGGCTGGCCTTCTGCTT CCAGGGGGAAGTGTGTTCCTCCCCCGCGACCGGGCCCACAGCGTCCTGGAGAGGGCCCGG AGGGCCAACTCGTTTTGGGAGGAGATGAAGAAGGGCAACCTGGAGAGGGAGTGCCTGGAG GAGACCTGCTCCTACGAGGAGGCCCGCGAGGTCTTCGAGGACCAGCAGAAGACGGATGAA TTCTGGAATAAATACAAAGACGGCGACCAGTGTGAAAGCAGCCCTTGCCAGAACCAGGGC AAGTGCAAAGACGGCCTCGGGGAGTACAACTGCACCTGTGCCGAAGGCTTCGAAGGCAAA AACTGTGAATTACGGCTCGTCCCCGAAGGCCCGGCCGTCCACTCAGCGTGGGAGGACCCG GACAGCGCCCTGCTCCGCCGAGAGGCTGCGGAAGGGAGGGCCGTTACCATGGAAACGAGC GCTGCGTCTCCCTCCTTGGAGGAGGCTGTTTGTCCTGGTCCTCGGGGTCCTGGGGTCCCA CCGATGTCGGTGCTGAGTGCGCAGGACTCTCCGAGGACAAAGCGTTGATACAGTTAACTG CACATGGAGCAGTCCCTGAGTTTTCCTAATGCGGTGACTAATTTTTAATAAAAAGTAGGT TAGCATCAATAAGAGGAGGACGAGGACGAGAGCAGCCTGGTCCGGATAGTGGGCGGGCGG GACTGCAGAGAGGGCGAGTGCCCCTGGCAGGCCCTGCTCGTCAACGAGGAAAACGAGGGC TTCTGTGGCGGCACCATCCTGAGCGAGTTCCACGTGCTCACGGCGGCCCACTGCCTCCAC CAGGCCAAGAAATTCAAGGTGAGGGTAGGCGACCGCAACCTGGAGAAGGAGGAGGGCGAC GAGGCAGCGCACGAGGTGGAGGTGACGGTGAAGCACAGCCGCTTCGTCAGGGAGACCTAC GACTTCGACATCGCGGTGCTCAAGCTCAAGACGCCCATCACCTTCCGCACGAACGTGGCC CCCGCCTGCCTGCCCGAGAAGAACTGGGCCGAGGCCACGCTGCTGACCCAGAAGACGGGC ATCGTCAGTGGCTTCGGGCGCACACACGAGCGGGGCCGCCCGTCGTCCACCCTCAAGATG CTGGAGGTGCCCTACGTGGACAGGAACACCTGCAAGCTGTCCAGCAGCTTCCTTATCACC CCCAACATGTTCTGCGCCGGCTACGACGAGCAGCCCGAGGACGCCTGCCAGGGCGACAGC GGCGGCCCCCACGTCACCCGCTTCAGGGACACCTACTTCGTCACCGGCATCGTCAGCTGG GGCGAAGGGTGTGCGCGGAGGGGCAAGTACGGCGTCTACACCAAGGTCACCAACTTCCTC AAGTGGATCGAGCGGTCCATGAGAGCCAGGGCGGAGGCCGGGGCGGAGCCGCACCCCCAG TAAAGGTCTCGCTGCTGCGACCCCTCCCCGAGTGGCTTCTGGCCCCACGGAGGCAGGGAT GGGACTGGGGGTTCCCGGCCGCTCCCCTTCTGGCCGGGGCGGAGGCCTCGTTCAGCCCCC GCCCCGGGGTTTGGGGGCGCAGGGGCGGGGGCTGCCCCCTTCACCACCGGGAGAGGCCAG CTCCCTGGAGAGGGGGGCCGGTTTCCCAGAAACAGTCGAGCTGGGGGGCCCACGTCTGTG TGTCCACCCCTGACGGCCTCAAGGGAACCCTCCTGCAGTCAAGGCCAGGGCCTCTGTCCC CAGCGAGCTGGGGGGGCTCTGCACCAGTGGGAACTCGGGGAGCCGCACAAATAACACCCG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 112-235, - strand, RNAz p=0.986256 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 112-235, - strand, RNAz p=0.986256 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 73-235, gnl|bosTau2|chr12 (46841081-46840919) | |
| 73-235, gnl|canFam2|chr22 (63546192-63546386) | |
| 73-235, gnl|danRer3|chr20 (25987214-25987042) | |
| 73-235, gnl|dasNov1|scaffold_113927 (4721-4515) | |
| 73-235, gnl|echTel1|scaffold_274418 (8490-8669) | |
| 73-235, gnl|fr1|chrUn (111176925-111176752) | |
| 73-235, gnl|galGal2|chr1 (130595929-130595733) | |
| 73-235, gnl|hg17|chr13 (112831735-112831950) | |
| 73-235, gnl|Hg17|chr13 (112831766-112831928) | |
| 73-235, gnl|loxAfr1|scaffold_10893 (6277-6092) | |
| 73-235, gnl|mm7|chr8 (13013686-13013879) | |
| 73-235, gnl|Mm7|chr8 (13013712-13013874) | |
| 73-235, gnl|monDom2|scaffold_11 (32387771-32387592) | |
| 73-235, gnl|oryCun1|scaffold_86720 (1828-2027) | |
| 73-235, gnl|panTro1|chr14 (96455762-96455977) | |
| 73-235, gnl|rheMac2|chr17 (93250274-93250485) | |
| 73-235, gnl|rn3|chr16 (81345130-81344938) | |
| 73-235, gnl|tetNig1|chr3 (1154203-1154378) | |
| 258-371, gnl|bosTau2|chr12 (46835980-46835867) | |
| 258-371, gnl|canFam2|chr22 (63549972-63550117) | |
| 258-371, gnl|danRer3|chrUn (32157198-32157057) | |
| 258-371, gnl|dasNov1|scaffold_64367 (4816-4654) | |
| 258-371, gnl|echTel1|scaffold_274418 (21185-21349) | |
| 258-371, gnl|galGal2|chr9 (721984-722110) | |
| 258-371, gnl|hg17|chr13 (112841663-112841825) | |
| 258-371, gnl|Hg17|chr13 (112841670-112841783) | |
| 258-371, gnl|loxAfr1|scaffold_9692 (17383-17504) | |
| 258-371, gnl|mm7|chr8 (13020257-13020414) | |
| 258-371, gnl|Mm7|chr8 (13020264-13020377) | |
| 258-371, gnl|monDom2|scaffold_11 (32381433-32381270) | |
| 258-371, gnl|oryCun1|scaffold_83034 (3975-4113) | |
| 258-371, gnl|panTro1|chr14 (96465379-96465541) | |
| 258-371, gnl|rheMac2|chr17 (93260176-93260338) | |
| 258-371, gnl|rn3|chr16 (81337203-81337046) | |
| 258-371, gnl|tetNig1|chr7 (9585174-9585308) | |
| 258-371, gnl|xenTro1|scaffold_563 (722496-722645) | |
| 867-1445, gnl|bosTau2|chr12 (46830514-46829937) | |
| 867-1445, gnl|Hg17|chr13 (112851229-112851791) | |
| 867-1445, gnl|Mm7|chr8 (13029511-13030082) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 73-235, gnl|bosTau2|chr12 (46841081-46840919) | |
| 73-235, gnl|canFam2|chr22 (63546192-63546386) | |
| 73-235, gnl|danRer3|chr20 (25987214-25987042) | |
| 73-235, gnl|dasNov1|scaffold_113927 (4721-4515) | |
| 73-235, gnl|echTel1|scaffold_274418 (8490-8669) | |
| 73-235, gnl|fr1|chrUn (111176925-111176752) | |
| 73-235, gnl|galGal2|chr1 (130595929-130595733) | |
| 73-235, gnl|hg17|chr13 (112831735-112831950) | |
| 73-235, gnl|Hg17|chr13 (112831766-112831928) | |
| 73-235, gnl|loxAfr1|scaffold_10893 (6277-6092) | |
| 73-235, gnl|mm7|chr8 (13013686-13013879) | |
| 73-235, gnl|Mm7|chr8 (13013712-13013874) | |
| 73-235, gnl|monDom2|scaffold_11 (32387771-32387592) | |
| 73-235, gnl|oryCun1|scaffold_86720 (1828-2027) | |
| 73-235, gnl|panTro1|chr14 (96455762-96455977) | |
| 73-235, gnl|rheMac2|chr17 (93250274-93250485) | |
| 73-235, gnl|rn3|chr16 (81345130-81344938) | |
| 73-235, gnl|tetNig1|chr3 (1154203-1154378) | |
| 258-371, gnl|bosTau2|chr12 (46835980-46835867) | |
| 258-371, gnl|canFam2|chr22 (63549972-63550117) | |
| 258-371, gnl|danRer3|chrUn (32157198-32157057) | |
| 258-371, gnl|dasNov1|scaffold_64367 (4816-4654) | |
| 258-371, gnl|echTel1|scaffold_274418 (21185-21349) | |
| 258-371, gnl|galGal2|chr9 (721984-722110) | |
| 258-371, gnl|hg17|chr13 (112841663-112841825) | |
| 258-371, gnl|Hg17|chr13 (112841670-112841783) | |
| 258-371, gnl|loxAfr1|scaffold_9692 (17383-17504) | |
| 258-371, gnl|mm7|chr8 (13020257-13020414) | |
| 258-371, gnl|Mm7|chr8 (13020264-13020377) | |
| 258-371, gnl|monDom2|scaffold_11 (32381433-32381270) | |
| 258-371, gnl|oryCun1|scaffold_83034 (3975-4113) | |
| 258-371, gnl|panTro1|chr14 (96465379-96465541) | |
| 258-371, gnl|rheMac2|chr17 (93260176-93260338) | |
| 258-371, gnl|rn3|chr16 (81337203-81337046) | |
| 258-371, gnl|tetNig1|chr7 (9585174-9585308) | |
| 258-371, gnl|xenTro1|scaffold_563 (722496-722645) | |
| 867-1445, gnl|bosTau2|chr12 (46830514-46829937) | |
| 867-1445, gnl|Hg17|chr13 (112851229-112851791) | |
| 867-1445, gnl|Mm7|chr8 (13029511-13030082) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.152812) | |
| eli (0.151814) | |
| eje (0.0988338) |