Non-Coding RNA Search

Ss1.1-Pig4-TMW8063F01.5

Sequence:


               
               TATGCAAAAAAAAAATACTGTATTAATAAAGAGCAGCATTTTTGTAACAAAAAGACTTGT
TGGAGCTATTTGGTGCTTGAATGTGACTGTCCTTTTTACTTTTGCTAAGCCTTATTTAAA
TTTTGTATACCATGGAATATGTAGAACTTGTCGAATCATTTTAGTGCTGAGGGGGTCTTT
TTGTTTGTTTTTTGTTGCAGTTTTCCTGGTGGCTTGTTTTGTATTGTAAGACAGCACTTG
CTGACATAAGTACTAAGGCACTAAGAGAAAACACACACAGATAAGTATTTATAAGATGCT
TGGGACTGATAGGAGGATTTTTTGTTTGATTTTGTAAGAGAAAAAAAATCGATGAAACCA
TGCTAATCCAGCACCCAACCCCCCTCCCCATGGGGATGTCTTAGAATCTTCAGCTATAAA
ATCGTTCACCTAAGCACAGCATCACCTTACAGCCCTGTGGATTATAAATCATTTAGCAAG
GCTGTAAACTCCACTCCCAAAACAAAGACATAACTTAACCAACTGCTCGGTTGTCCTTCA
TTATAAAATGAGCTGGCAACAGCAGGAACAAAAAAGAAAAGTCTCCTCCTCGCCCCTAAT
TTTTTTCTCCCATGTGGTTTTAGCCATTCCCCATCACTGTGTTGTGAATTGTAGAAGAAA
CAAATATTTTGAAAGAACTTAAATGGGTTTCAAAAATGGTCTCAACATTTATAATTCATA
CCTGTATTTGGCGGTTGTCATAACCCAATCCTTCTGCACTCAAACATCTAGACAGGTCTG
TCGGGGAAGTAGTTGACGGTTTACAGCCTTTGCTTTTTAACTGTTCAGTTCCCTTTAAAG
CACAACTAGCTGCTTGTTTACAGATGATATTTTTTATGTATATTTTGTATAGTGTATTAT
CATTTTTGCCAAATATGTTTTTGCATTTTGGATGGCTATGGAGTACCTAAGGTTGCATTC
ATGTAATACCTGTTTGTTGTTGTAAACCTCTCCATTCAGCTGGTAGAAATTCTCCTGTGT
TCTACTTGGTCGGTCTCCTGTGATTGTTAAGATGTGCTCCTCGGTAGTCCTCCCAGCTGT
AGATTTACCAGCTTAAAAGTTTGTTAGGATCTGTGCAATAAAGTGTTTGCAGTCTTATTT
TCTCTAAGAAATTCCCTATGGATGTCATAATTGTTGTATATTGAACAAATATTTATACTT
ATGCATTTGCATAACATTGAAATAAAAATTTAGCATGAAAAGAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATGCAAAAAAAAAATACTGTATTAATAAAGAGCAGCATTTTTGTAACAAAAAGACTTGT
TGGAGCTATTTGGTGCTTGAATGTGACTGTCCTTTTTACTTTTGCTAAGCCTTATTTAAA
TTTTGTATACCATGGAATATGTAGAACTTGTCGAATCATTTTAGTGCTGAGGGGGTCTTT
TTGTTTGTTTTTTGTTGCAGTTTTCCTGGTGGCTTGTTTTGTATTGTAAGACAGCACTTG
CTGACATAAGTACTAAGGCACTAAGAGAAAACACACACAGATAAGTATTTATAAGATGCT
TGGGACTGATAGGAGGATTTTTTGTTTGATTTTGTAAGAGAAAAAAAATCGATGAAACCA
TGCTAATCCAGCACCCAACCCCCCTCCCCATGGGGATGTCTTAGAATCTTCAGCTATAAA
ATCGTTCACCTAAGCACAGCATCACCTTACAGCCCTGTGGATTATAAATCATTTAGCAAG
GCTGTAAACTCCACTCCCAAAACAAAGACATAACTTAACCAACTGCTCGGTTGTCCTTCA
TTATAAAATGAGCTGGCAACAGCAGGAACAAAAAAGAAAAGTCTCCTCCTCGCCCCTAAT
TTTTTTCTCCCATGTGGTTTTAGCCATTCCCCATCACTGTGTTGTGAATTGTAGAAGAAA
CAAATATTTTGAAAGAACTTAAATGGGTTTCAAAAATGGTCTCAACATTTATAATTCATA
CCTGTATTTGGCGGTTGTCATAACCCAATCCTTCTGCACTCAAACATCTAGACAGGTCTG
TCGGGGAAGTAGTTGACGGTTTACAGCCTTTGCTTTTTAACTGTTCAGTTCCCTTTAAAG
CACAACTAGCTGCTTGTTTACAGATGATATTTTTTATGTATATTTTGTATAGTGTATTAT
CATTTTTGCCAAATATGTTTTTGCATTTTGGATGGCTATGGAGTACCTAAGGTTGCATTC
ATGTAATACCTGTTTGTTGTTGTAAACCTCTCCATTCAGCTGGTAGAAATTCTCCTGTGT
TCTACTTGGTCGGTCTCCTGTGATTGTTAAGATGTGCTCCTCGGTAGTCCTCCCAGCTGT
AGATTTACCAGCTTAAAAGTTTGTTAGGATCTGTGCAATAAAGTGTTTGCAGTCTTATTT
TCTCTAAGAAATTCCCTATGGATGTCATAATTGTTGTATATTGAACAAATATTTATACTT
ATGCATTTGCATAACATTGAAATAAAAATTTAGCATGAAAAGAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1075-1248, gnl|bosTau2|chr8 (61930120-61930286)
               

               
               1075-1248, gnl|Mm7|chr13 (99861324-99861159)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1075-1248, gnl|bosTau2|chr8 (61930120-61930286)
               

               
               1075-1248, gnl|Mm7|chr13 (99861324-99861159)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               gul (0.355177)
               

               
               ski (0.29347)
               

               
               ste (0.270416)
               

               
               sug (0.254582)
               

               
               pgl (0.236967)
               

               
               aor (0.195274)
               

               
               fbs (0.175346)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               tra (0.123092)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.355177)
               

               
               ski (0.29347)
               

               
               ste (0.270416)
               

               
               sug (0.254582)
               

               
               pgl (0.236967)
               

               
               aor (0.195274)
               

               
               fbs (0.175346)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               tra (0.123092)

	1075-1248, gnl\|bosTau2\|chr8 (61930120-61930286)
	1075-1248, gnl\|Mm7\|chr13 (99861324-99861159)

	gul (0.355177)
	ski (0.29347)
	ste (0.270416)
	sug (0.254582)
	pgl (0.236967)
	aor (0.195274)
	fbs (0.175346)
	lin (0.145603)
	spl (0.143184)
	pla (0.133672)
	nmm (0.132802)
	ret (0.128733)
	tra (0.123092)