Ss1.1-Pig4-TMW8063F07.3
|
CAGATCGCCGAGCGGTAGTTTCGGCAGCGCTCCTTGATCTGCAGGTTTACCGGAGGCCGT
GACTAGGCTCTCGCCGGAACCATGTTTCGCAACCAGTATGACAATGATGTCACTGTTTGG
AGCCCTCAGGGCAGGATTCATCAAATTGAATATGCAATGGAAGCCGTCAAACAAGGTTCA
GCAACAGTTGGTCTGAAATCAAAAACCCATGCAGTGCTGGTTGCATTGAAGAGGGCACAA
TCAGAACTTGCAGCTCATCAGAAAAAAATCCTCCATGTTGATAACCATATCGGTATCTCA
ATTGCGGGACTTACTGCCGATGCTAGACTGTTATGTAATTTTATGCGTCAGGAGTGTTTG
GATTCCAGATTTGTATTTGACAGACCTCTGCCTGTGTCTCGTCTTGTATCTCTAATTGGA
AGCAAAACCCAGATACCAACGCAACGATATGGCCGGAGACCGTATGGTGTTGGGCTACTT
ATTGCTGGTTATGATGATATGGGCCCTCACATTTTCCAGACTTGTCCATCTGCTAACTAT
TTCGACTGCAGAGCCATGTCCATTGGAGCTCGTTCTCAATCAGCTCGTACTTACTTGGAG
AGACATATGTCGGAGTTTATGGAATGCAATTTGAATGAACTGGTTAAGCATGGTTTGCGA
GCCTTACGAGAGACCCTGCCTGCAGAACAGGACCTAACTACAAAGAATGTTTCCATTGGA
ATTGTCGGTAAAGACTTAGAGTTTACGATTTATGACGATGATGATGTGTCTCCATTCCTG
GAAGGTCTTGAAGAAAGACCACAGAGAAAGGCACAGCCTGCTCAACCTGCTGATGAACCT
GCAGAAAAGGCTGATGAACCAATGGAACATTAAATGATAGACCAGTCTGTATGTGTATTA
CCAAACATGTAAGAATGCAAAAACACGATACTGATGACAATAATCTATACTTTGAACCAA
AAGATACAGAATGGGGTAATAGTGTGTTTTAGGAATCAGTTCAGATGTGAGTTTTTTTCC
AAGCAACTTCACCAAGGCCATATAATGGGTTGCATTTTTCTTTAGAGGGTCTGTATAATC
ATTTTCTAGAAAGTATAGTTATCTGTACTAATGTTTTTATATGAAGAACATACTGTCTTT
GTGGTTTTGAAGACAACTGTGAAATAAAATTGTTTCACCTGCTAAAAAAAAAAAAAAAAA
TCACATACACCA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CAGATCGCCGAGCGGTAGTTTCGGCAGCGCTCCTTGATCTGCAGGTTTACCGGAGGCCGT
GACTAGGCTCTCGCCGGAACCATGTTTCGCAACCAGTATGACAATGATGTCACTGTTTGG
AGCCCTCAGGGCAGGATTCATCAAATTGAATATGCAATGGAAGCCGTCAAACAAGGTTCA
GCAACAGTTGGTCTGAAATCAAAAACCCATGCAGTGCTGGTTGCATTGAAGAGGGCACAA
TCAGAACTTGCAGCTCATCAGAAAAAAATCCTCCATGTTGATAACCATATCGGTATCTCA
ATTGCGGGACTTACTGCCGATGCTAGACTGTTATGTAATTTTATGCGTCAGGAGTGTTTG
GATTCCAGATTTGTATTTGACAGACCTCTGCCTGTGTCTCGTCTTGTATCTCTAATTGGA
AGCAAAACCCAGATACCAACGCAACGATATGGCCGGAGACCGTATGGTGTTGGGCTACTT
ATTGCTGGTTATGATGATATGGGCCCTCACATTTTCCAGACTTGTCCATCTGCTAACTAT
TTCGACTGCAGAGCCATGTCCATTGGAGCTCGTTCTCAATCAGCTCGTACTTACTTGGAG
AGACATATGTCGGAGTTTATGGAATGCAATTTGAATGAACTGGTTAAGCATGGTTTGCGA
GCCTTACGAGAGACCCTGCCTGCAGAACAGGACCTAACTACAAAGAATGTTTCCATTGGA
ATTGTCGGTAAAGACTTAGAGTTTACGATTTATGACGATGATGATGTGTCTCCATTCCTG
GAAGGTCTTGAAGAAAGACCACAGAGAAAGGCACAGCCTGCTCAACCTGCTGATGAACCT
GCAGAAAAGGCTGATGAACCAATGGAACATTAAATGATAGACCAGTCTGTATGTGTATTA
CCAAACATGTAAGAATGCAAAAACACGATACTGATGACAATAATCTATACTTTGAACCAA
AAGATACAGAATGGGGTAATAGTGTGTTTTAGGAATCAGTTCAGATGTGAGTTTTTTTCC
AAGCAACTTCACCAAGGCCATATAATGGGTTGCATTTTTCTTTAGAGGGTCTGTATAATC
ATTTTCTAGAAAGTATAGTTATCTGTACTAATGTTTTTATATGAAGAACATACTGTCTTT
GTGGTTTTGAAGACAACTGTGAAATAAAATTGTTTCACCTGCTAAAAAAAAAAAAAAAAA
TCACATACACCA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
128-231, gnl|bosTau2|chr15 (24563834-24563937) |
|
128-231, gnl|Hg17|chr11 (14496105-14496002) |
|
128-231, gnl|Mm7|chr7 (110190226-110190123) |
| |
|
496-629, gnl|bosTau2|chr15 (24566955-24567088) |
|
496-629, gnl|canFam2|chr21 (40427281-40427379) |
|
496-629, gnl|dasNov1|scaffold_83978 (7336-7231) |
|
496-629, gnl|echTel1|scaffold_278941 (17515-17606) |
|
496-629, gnl|fr1|chrUn (301055603-301055705) |
|
496-629, gnl|galGal2|chr5 (7932115-7932215) |
|
496-629, gnl|hg17|chr11 (14491678-14491784) |
|
496-629, gnl|Hg17|chr11 (14491821-14491688) |
|
496-629, gnl|mm7|chr7 (110185805-110185910) |
|
496-629, gnl|Mm7|chr7 (110185947-110185814) |
|
496-629, gnl|monDom2|scaffold_10 (57462130-57462024) |
|
496-629, gnl|oryCun1|scaffold_173629 (5015-5113) |
|
496-629, gnl|panTro1|chr9 (14700748-14700854) |
|
496-629, gnl|rheMac2|chr14 (57403054-57402948) |
|
496-629, gnl|rn3|chr1 (172378684-172378789) |
|
496-629, gnl|tetNig1|chr13 (11501537-11501431) |
|
496-629, gnl|xenTro1|scaffold_914 (250620-250521) |
| |
|
815-1183, gnl|bosTau2|chr15 (24574619-24574989) |
|
815-1183, gnl|Hg17|chr11 (14483372-14483002) |
|
815-1183, gnl|Mm7|chr7 (110181055-110180704) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
128-231, gnl|bosTau2|chr15 (24563834-24563937) |
|
128-231, gnl|Hg17|chr11 (14496105-14496002) |
|
128-231, gnl|Mm7|chr7 (110190226-110190123) |
| |
|
496-629, gnl|bosTau2|chr15 (24566955-24567088) |
|
496-629, gnl|canFam2|chr21 (40427281-40427379) |
|
496-629, gnl|dasNov1|scaffold_83978 (7336-7231) |
|
496-629, gnl|echTel1|scaffold_278941 (17515-17606) |
|
496-629, gnl|fr1|chrUn (301055603-301055705) |
|
496-629, gnl|galGal2|chr5 (7932115-7932215) |
|
496-629, gnl|hg17|chr11 (14491678-14491784) |
|
496-629, gnl|Hg17|chr11 (14491821-14491688) |
|
496-629, gnl|mm7|chr7 (110185805-110185910) |
|
496-629, gnl|Mm7|chr7 (110185947-110185814) |
|
496-629, gnl|monDom2|scaffold_10 (57462130-57462024) |
|
496-629, gnl|oryCun1|scaffold_173629 (5015-5113) |
|
496-629, gnl|panTro1|chr9 (14700748-14700854) |
|
496-629, gnl|rheMac2|chr14 (57403054-57402948) |
|
496-629, gnl|rn3|chr1 (172378684-172378789) |
|
496-629, gnl|tetNig1|chr13 (11501537-11501431) |
|
496-629, gnl|xenTro1|scaffold_914 (250620-250521) |
| |
|
815-1183, gnl|bosTau2|chr15 (24574619-24574989) |
|
815-1183, gnl|Hg17|chr11 (14483372-14483002) |
|
815-1183, gnl|Mm7|chr7 (110181055-110180704) |
|
fat (0.737137) |
|
tra (0.492368) |
|
fco (0.471624) |
|
tbr (0.462535) |
|
col (0.390016) |
|
ret (0.3862) |
|
sin (0.349895) |
|
med (0.348756) |
|
ski (0.29347) |
|
spl (0.286369) |
|
lnt (0.284616) |
|
kid (0.259471) |
|
ova (0.258264) |
|
mas (0.210305) |
|
jej (0.197844) |
|
cmu (0.186393) |
|
gul (0.177588) |
|
ill (0.175593) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
nco (0.161734) |
|
isp (0.150376) |
|
bfe (0.149858) |
|
liv (0.146284) |
|
lin (0.145603) |
|
csk (0.140746) |
|
cst (0.140036) |
|
ste (0.135208) |
|
lyg (0.133103) |
|
sug (0.127291) |
|
thg (0.126791) |
|
bla (0.124347) |
|
eru (0.120048) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
jca (0.11396) |
|
spc (0.113366) |
|
nbm (0.0993246) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
|
fat (0.737137) |
|
tra (0.492368) |
|
fco (0.471624) |
|
tbr (0.462535) |
|
col (0.390016) |
|
ret (0.3862) |
|
sin (0.349895) |
|
med (0.348756) |
|
ski (0.29347) |
|
spl (0.286369) |
|
lnt (0.284616) |
|
kid (0.259471) |
|
ova (0.258264) |
|
mas (0.210305) |
|
jej (0.197844) |
|
cmu (0.186393) |
|
gul (0.177588) |
|
ill (0.175593) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
nco (0.161734) |
|
isp (0.150376) |
|
bfe (0.149858) |
|
liv (0.146284) |
|
lin (0.145603) |
|
csk (0.140746) |
|
cst (0.140036) |
|
ste (0.135208) |
|
lyg (0.133103) |
|
sug (0.127291) |
|
thg (0.126791) |
|
bla (0.124347) |
|
eru (0.120048) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
jca (0.11396) |
|
spc (0.113366) |
|
nbm (0.0993246) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
