Non-Coding RNA Search

Ss1.1-Pig4-TMW8063F10.3

Sequence:


               
               GGATTTGAACTTTGTTTCCAGAAATTCTTCAATTTGAAACCACCTTTTCTAAAACAGTCA
ATTCATCTAAATAAGTCACTGAACTGTTACCTGCCAAACGCTATACTGTGTCCTGGTGAT
ACAAGTCACTACCATTTCTCAGTTTTTGCTGAATGCTAAGGGAAGTAACAGTATTCCCAC
ACTAGGGTTCAAGTTACTGCAAAATTACCTACCCCAGTTCATCTCTGCTGGACATTTGGA
AACCATGCACTAGCAAACCCAACTGACTTCTGCTAGGTAGAGGCATTTGTCTTAGAGAGA
GAGAGGAAGAGAGAGAGCGCGTGCGCACAAAAGAGAGGGGACGCAGGACAGAGAAAGAGA
GAGAGAATGAGAAAGAAAAAGGAATGCGAGAGAAAGAGACGTAATGGTAGAGAGTGCTGG
TGAGCTACCCAGAGAGAGCGAGAGAGCGGGGTGGGGTCAGGAGGAGAAGATAACCAACAG
TTAGGTCTGCATTTTCTGTCTGTACTCTGGAGTCGGCATAGGCCACGTTTGCAACTTGTG
TCAGCTTGAGTCATCAGAGAGGGTCTTAATGGTCGAAAACGAGTTGGCTGGAAGAAAACA
GAACAGAACTTGTTAAGAGGGCATGTGAGATTTTTTCACGCCTTAATTAAGCTCCTTCAG
TTTAAAGGCCGCACACTGACATAGCATAGCAAGTGTAGACTGGGCACGCAAGCGTTTGAA
CCCCATTCAGAACTCTCAGACTCTTCAGACACACAAGTAGATTGATCTAAGGCATGCTCC
CAGCATCTGTGCACCCAGTTAGTCCACTCGGAGTCCATTAACCTGCATGCGGAGACACCC
AAGTCCACCCCAATTAACAAGCAAATACCAAAGCAGTTGGGAGTACAAAGGGTAGACAAT
TTGCCTTAGAAAGTGACTTGAATGTACAAAGATACTTGATGCACTTATTTTTTAATGTGA
GACAGCAAGTTTATAAAACATCCGTGTAGGATTATAGATACTCCAGTTAAAGGAGCATGT
GTGTGCGCGTGGGAGGGGTACTAGGAGCTGACCTGATTGGTGCAACAGTTTGATGCTGAG
CACTGCATGTTAAATACCACCTCAGGCCCCTCAGCCAAACAGGTTGAGCCTTTCGTAGCT
TCTTTACTACTGCAAGTTCAAGATGGAAATGGCTTCTGTGATCAGAACTGGGAAAACAGT
AAATCTTAACGGTGGAAGAGCTTCTCAGCAAGTGTACAGTATTTACCTTCCTTTGTCTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATTTGAACTTTGTTTCCAGAAATTCTTCAATTTGAAACCACCTTTTCTAAAACAGTCA
ATTCATCTAAATAAGTCACTGAACTGTTACCTGCCAAACGCTATACTGTGTCCTGGTGAT
ACAAGTCACTACCATTTCTCAGTTTTTGCTGAATGCTAAGGGAAGTAACAGTATTCCCAC
ACTAGGGTTCAAGTTACTGCAAAATTACCTACCCCAGTTCATCTCTGCTGGACATTTGGA
AACCATGCACTAGCAAACCCAACTGACTTCTGCTAGGTAGAGGCATTTGTCTTAGAGAGA
GAGAGGAAGAGAGAGAGCGCGTGCGCACAAAAGAGAGGGGACGCAGGACAGAGAAAGAGA
GAGAGAATGAGAAAGAAAAAGGAATGCGAGAGAAAGAGACGTAATGGTAGAGAGTGCTGG
TGAGCTACCCAGAGAGAGCGAGAGAGCGGGGTGGGGTCAGGAGGAGAAGATAACCAACAG
TTAGGTCTGCATTTTCTGTCTGTACTCTGGAGTCGGCATAGGCCACGTTTGCAACTTGTG
TCAGCTTGAGTCATCAGAGAGGGTCTTAATGGTCGAAAACGAGTTGGCTGGAAGAAAACA
GAACAGAACTTGTTAAGAGGGCATGTGAGATTTTTTCACGCCTTAATTAAGCTCCTTCAG
TTTAAAGGCCGCACACTGACATAGCATAGCAAGTGTAGACTGGGCACGCAAGCGTTTGAA
CCCCATTCAGAACTCTCAGACTCTTCAGACACACAAGTAGATTGATCTAAGGCATGCTCC
CAGCATCTGTGCACCCAGTTAGTCCACTCGGAGTCCATTAACCTGCATGCGGAGACACCC
AAGTCCACCCCAATTAACAAGCAAATACCAAAGCAGTTGGGAGTACAAAGGGTAGACAAT
TTGCCTTAGAAAGTGACTTGAATGTACAAAGATACTTGATGCACTTATTTTTTAATGTGA
GACAGCAAGTTTATAAAACATCCGTGTAGGATTATAGATACTCCAGTTAAAGGAGCATGT
GTGTGCGCGTGGGAGGGGTACTAGGAGCTGACCTGATTGGTGCAACAGTTTGATGCTGAG
CACTGCATGTTAAATACCACCTCAGGCCCCTCAGCCAAACAGGTTGAGCCTTTCGTAGCT
TCTTTACTACTGCAAGTTCAAGATGGAAATGGCTTCTGTGATCAGAACTGGGAAAACAGT
AAATCTTAACGGTGGAAGAGCTTCTCAGCAAGTGTACAGTATTTACCTTCCTTTGTCTTA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1260, gnl|bosTau2|chr20 (6414297-6415557)
               

               
               1-1260, gnl|Hg17|chr5 (71536846-71538122)
               

               
               1-1260, gnl|Mm7|chr13 (96495579-96494296)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1260, gnl|bosTau2|chr20 (6414297-6415557)
               

               
               1-1260, gnl|Hg17|chr5 (71536846-71538122)
               

               
               1-1260, gnl|Mm7|chr13 (96495579-96494296)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               ecc (0.23007)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.23007)
               

               
               ebs (0.118301)

	1-1260, gnl\|bosTau2\|chr20 (6414297-6415557)
	1-1260, gnl\|Hg17\|chr5 (71536846-71538122)
	1-1260, gnl\|Mm7\|chr13 (96495579-96494296)