Non-Coding RNA Search

Ss1.1-Pig4-TMW8063G05.5

Sequence:


               
               TTCCAATGGCGTGGGACTGCTGGATCCTTGCGCAGCTCCACTTTTTATTGTTCGGGAAGC
TCCCGGGAGGCTGCACGAGCTCACGATCCCACCAGGCAGGAGGGTGCAGTGTCCCTCGCC
TCCTCAAACTCCCGCGGCATCTCTGACTTTCTGGTGACGTCACCCAGCCAGGAGGACTGG
GCGCCGTCAAGCCTCCCTGAGGGCTGGGTCCTGGCTGCAGGAGCAGAAGGGGAAGTGCCC
GCAGCACGGCTGCAGCCAGGGCTTCCACGCGATGCGACCCGGGGACAGCTGCGGGGGCAC
GGGGCTCAGGGTCCTCCTGTGCTCGCGCACCGCCTGCTCCACCCTGGCCAGCACCGCGCC
GTACAGGGGCTCCGAGCCGGGGGCCAGGGGCTGGGCCTCTGAGGGGTCCCCGGAGAGGTC
GAAGAGCAGAGGGGGGTCGTGGTGGGTGACGCCCGGCCCGGAGCACGGGCACAGGCCGTG
GCCGTAGCAGGCCCCCGCTCCCTCGGGGTGCAAGCGGGGTGTGACGTAGTGGACCTTCCA
GAGCCTTCCGCTGTCCTTGTCGTGCCAGCGTGCGGCGTGGAGGTGCTCCCCGCAGTAGTG
AAACAGGAACTCGTGGGCCGAGTGCTCGGCCTCTCCCTGCAGCAAGGGCACCAGGCTCCG
GCCATCGATCACCCTGTCCTGGGGCACCTGGCCACCGCCCAGCTGGACCACGGTGGGGAA
GATGTCCATCAGGCTGGTGGGCTCCTGGATCACGCGGCCGGCCGGCAGCACCCCGGGCCA
CCGGAATATCCCAGGGACGCGGATCCCGCCTTCCCAGCCGCCCATGCCTTTGCCACCTCT
GTATATCCCATTCCATCCGCCCAGCTGGACGTGCCCATCTATTGCCTCCAGGTGTCCCCC
GTGATCAGAGGTGAAGTACGTGAGCGTCGTGTTTTTCAACCCATGTTCTTCGATGGCGTT
AAGAATGTCCCCCACAAGGCCGTCCATCTCCTCCACGTTGTCGCCATAGAGGCCGTGCTG
ACTTTTCCCCTGGAACTCTTTGGTGGTCATGAGGGGCACGTGGACGTGGAGCAGGGAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCAATGGCGTGGGACTGCTGGATCCTTGCGCAGCTCCACTTTTTATTGTTCGGGAAGC
TCCCGGGAGGCTGCACGAGCTCACGATCCCACCAGGCAGGAGGGTGCAGTGTCCCTCGCC
TCCTCAAACTCCCGCGGCATCTCTGACTTTCTGGTGACGTCACCCAGCCAGGAGGACTGG
GCGCCGTCAAGCCTCCCTGAGGGCTGGGTCCTGGCTGCAGGAGCAGAAGGGGAAGTGCCC
GCAGCACGGCTGCAGCCAGGGCTTCCACGCGATGCGACCCGGGGACAGCTGCGGGGGCAC
GGGGCTCAGGGTCCTCCTGTGCTCGCGCACCGCCTGCTCCACCCTGGCCAGCACCGCGCC
GTACAGGGGCTCCGAGCCGGGGGCCAGGGGCTGGGCCTCTGAGGGGTCCCCGGAGAGGTC
GAAGAGCAGAGGGGGGTCGTGGTGGGTGACGCCCGGCCCGGAGCACGGGCACAGGCCGTG
GCCGTAGCAGGCCCCCGCTCCCTCGGGGTGCAAGCGGGGTGTGACGTAGTGGACCTTCCA
GAGCCTTCCGCTGTCCTTGTCGTGCCAGCGTGCGGCGTGGAGGTGCTCCCCGCAGTAGTG
AAACAGGAACTCGTGGGCCGAGTGCTCGGCCTCTCCCTGCAGCAAGGGCACCAGGCTCCG
GCCATCGATCACCCTGTCCTGGGGCACCTGGCCACCGCCCAGCTGGACCACGGTGGGGAA
GATGTCCATCAGGCTGGTGGGCTCCTGGATCACGCGGCCGGCCGGCAGCACCCCGGGCCA
CCGGAATATCCCAGGGACGCGGATCCCGCCTTCCCAGCCGCCCATGCCTTTGCCACCTCT
GTATATCCCATTCCATCCGCCCAGCTGGACGTGCCCATCTATTGCCTCCAGGTGTCCCCC
GTGATCAGAGGTGAAGTACGTGAGCGTCGTGTTTTTCAACCCATGTTCTTCGATGGCGTT
AAGAATGTCCCCCACAAGGCCGTCCATCTCCTCCACGTTGTCGCCATAGAGGCCGTGCTG
ACTTTTCCCCTGGAACTCTTTGGTGGTCATGAGGGGCACGTGGACGTGGAGCAGGGAAAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|50730340|ref|XP_416856.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50730340|ref|XP_416856.1|

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               192-540, gnl|bosTau2|chrX (48481033-48480685)
               

               
               192-540, gnl|Hg17|chrX (2846233-2846581)
               


               
               673-838, gnl|bosTau2|chrX (48493676-48493511)
               

               
               673-838, gnl|canFam2|chrX (1586002-1586121)
               

               
               673-838, gnl|danRer3|chrNA (45190183-45190064)
               

               
               673-838, gnl|dasNov1|scaffold_51150 (9611-9730)
               

               
               673-838, gnl|echTel1|scaffold_202790 (4390-4509)
               

               
               673-838, gnl|fr1|chrUn (132604772-132604653)
               

               
               673-838, gnl|galGal2|chr1 (121505621-121505740)
               

               
               673-838, gnl|Hg17|chrX (2821218-2821383)
               

               
               673-838, gnl|hg17|chrY (12933683-12933802)
               

               
               673-838, gnl|loxAfr1|scaffold_108711 (5225-5344)
               

               
               673-838, gnl|monDom2|scaffold_11 (1574512-1574631)
               

               
               673-838, gnl|oryCun1|scaffold_118779 (3107-2991)
               

               
               673-838, gnl|panTro1|chrY (13458811-13458930)
               

               
               673-838, gnl|rheMac2|chrX (734751-734870)
               

               
               673-838, gnl|rn3|chr2 (122613682-122613797)
               

               
               673-838, gnl|tetNig1|chr2 (12896290-12896171)
               

               
               673-838, gnl|xenTro1|scaffold_100 (763854-763973)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               192-540, gnl|bosTau2|chrX (48481033-48480685)
               

               
               192-540, gnl|Hg17|chrX (2846233-2846581)
               


               
               673-838, gnl|bosTau2|chrX (48493676-48493511)
               

               
               673-838, gnl|canFam2|chrX (1586002-1586121)
               

               
               673-838, gnl|danRer3|chrNA (45190183-45190064)
               

               
               673-838, gnl|dasNov1|scaffold_51150 (9611-9730)
               

               
               673-838, gnl|echTel1|scaffold_202790 (4390-4509)
               

               
               673-838, gnl|fr1|chrUn (132604772-132604653)
               

               
               673-838, gnl|galGal2|chr1 (121505621-121505740)
               

               
               673-838, gnl|Hg17|chrX (2821218-2821383)
               

               
               673-838, gnl|hg17|chrY (12933683-12933802)
               

               
               673-838, gnl|loxAfr1|scaffold_108711 (5225-5344)
               

               
               673-838, gnl|monDom2|scaffold_11 (1574512-1574631)
               

               
               673-838, gnl|oryCun1|scaffold_118779 (3107-2991)
               

               
               673-838, gnl|panTro1|chrY (13458811-13458930)
               

               
               673-838, gnl|rheMac2|chrX (734751-734870)
               

               
               673-838, gnl|rn3|chr2 (122613682-122613797)
               

               
               673-838, gnl|tetNig1|chr2 (12896290-12896171)
               

               
               673-838, gnl|xenTro1|scaffold_100 (763854-763973)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.133672)
               

               
               ese (0.126502)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               ese (0.126502)

	192-540, gnl\|bosTau2\|chrX (48481033-48480685)
	192-540, gnl\|Hg17\|chrX (2846233-2846581)

	673-838, gnl\|bosTau2\|chrX (48493676-48493511)
	673-838, gnl\|canFam2\|chrX (1586002-1586121)
	673-838, gnl\|danRer3\|chrNA (45190183-45190064)
	673-838, gnl\|dasNov1\|scaffold_51150 (9611-9730)
	673-838, gnl\|echTel1\|scaffold_202790 (4390-4509)
	673-838, gnl\|fr1\|chrUn (132604772-132604653)
	673-838, gnl\|galGal2\|chr1 (121505621-121505740)
	673-838, gnl\|Hg17\|chrX (2821218-2821383)
	673-838, gnl\|hg17\|chrY (12933683-12933802)
	673-838, gnl\|loxAfr1\|scaffold_108711 (5225-5344)
	673-838, gnl\|monDom2\|scaffold_11 (1574512-1574631)
	673-838, gnl\|oryCun1\|scaffold_118779 (3107-2991)
	673-838, gnl\|panTro1\|chrY (13458811-13458930)
	673-838, gnl\|rheMac2\|chrX (734751-734870)
	673-838, gnl\|rn3\|chr2 (122613682-122613797)
	673-838, gnl\|tetNig1\|chr2 (12896290-12896171)
	673-838, gnl\|xenTro1\|scaffold_100 (763854-763973)