Non-Coding RNA Search

Ss1.1-Pig4-TMW8063H14.5

Sequence:


               
               GATGTAAAGAATGTGGAAAAGCCTTTAGCCAAAGTTCATCCCTTATTCCACATCAGAGAA
TCCATACTGGCGAGAAACCCTATGAATGTAAGGAATGTGGGAAAACCTTCAGACACCCAT
CATCTCTTACTCAACATGTTCGAATTCATACTGGGGAGAAGCCCTATGAGTGTGGTATAT
GTGAGAAGGCATTCAGCCAGAGCATTGGGCTGATTCAGCATTTGAGAACTCATGTCAGAG
AGAAACCTTTTACATGCAAAGGCTGTGGAAAAGCATTTTTCCAAATTAGACACCTTAGGC
AACATGAGATTATTCACACGGGTGTGAAACCCTATGTTTGTAATGTATGCAGTAAAACCT
TCAGCCACAGCACATACCTAACTCAACATCAGAGAACTCATACTGGGGAAAGACCATATA
AGTGTAAGGAATGTGGGAAAGCCTTTAGCCAGAGAATACATCTTTCTATCCATCAGAGAG
TCCATACCGGAGTGAAACCTTATGAATGCAGTCATTGTGGGAAAGCTTTCAGGCATGATT
CATCCTTTGCTAAACATCAGAGAATTCATACTGGAGAAAAACCATATGATTGTAATGAAT
GTGGAAAAGCCTTCAGTTGTAGTTCATCACTTATTCGACATTGCAAAACACATTTAAGAA
CTACCTTCAGCAATGGTATGTGAAATATGTTCAGTATCAGAGAGTTCCCCAATCAGAGAA
AAAGCCTCTAAATCCATGGTTTTCTGACTTTTGGATGCCAAGAACCAATCATTTTTTTAA
TGGTTTGATCCAATGTTACAACTATTAATTTTACCATATTAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGTAAAGAATGTGGAAAAGCCTTTAGCCAAAGTTCATCCCTTATTCCACATCAGAGAA
TCCATACTGGCGAGAAACCCTATGAATGTAAGGAATGTGGGAAAACCTTCAGACACCCAT
CATCTCTTACTCAACATGTTCGAATTCATACTGGGGAGAAGCCCTATGAGTGTGGTATAT
GTGAGAAGGCATTCAGCCAGAGCATTGGGCTGATTCAGCATTTGAGAACTCATGTCAGAG
AGAAACCTTTTACATGCAAAGGCTGTGGAAAAGCATTTTTCCAAATTAGACACCTTAGGC
AACATGAGATTATTCACACGGGTGTGAAACCCTATGTTTGTAATGTATGCAGTAAAACCT
TCAGCCACAGCACATACCTAACTCAACATCAGAGAACTCATACTGGGGAAAGACCATATA
AGTGTAAGGAATGTGGGAAAGCCTTTAGCCAGAGAATACATCTTTCTATCCATCAGAGAG
TCCATACCGGAGTGAAACCTTATGAATGCAGTCATTGTGGGAAAGCTTTCAGGCATGATT
CATCCTTTGCTAAACATCAGAGAATTCATACTGGAGAAAAACCATATGATTGTAATGAAT
GTGGAAAAGCCTTCAGTTGTAGTTCATCACTTATTCGACATTGCAAAACACATTTAAGAA
CTACCTTCAGCAATGGTATGTGAAATATGTTCAGTATCAGAGAGTTCCCCAATCAGAGAA
AAAGCCTCTAAATCCATGGTTTTCTGACTTTTGGATGCCAAGAACCAATCATTTTTTTAA
TGGTTTGATCCAATGTTACAACTATTAATTTTACCATATTAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|17028377|gb|AAH17498.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|17028377|gb|AAH17498.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-654, gnl|bosTau2|chr10 (8996665-8996012)
               

               
               1-654, gnl|Hg17|chr19 (42818470-42817755)
               

               
               1-654, gnl|Mm7|chr2 (127310096-127309527)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-654, gnl|bosTau2|chr10 (8996665-8996012)
               

               
               1-654, gnl|Hg17|chr19 (42818470-42817755)
               

               
               1-654, gnl|Mm7|chr2 (127310096-127309527)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ret (0.128733)
               

               
               bla (0.124347)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               cty (0.10408)

	1-654, gnl\|bosTau2\|chr10 (8996665-8996012)
	1-654, gnl\|Hg17\|chr19 (42818470-42817755)
	1-654, gnl\|Mm7\|chr2 (127310096-127309527)