Non-Coding RNA Search

Ss1.1-Pig4-TMW8063I03.5

Sequence:


               
               GGAAGAATAGGAAAAAGAAGATCACCAAGGGCCCGGCTGTGGGTATCTACAATGGTAACG
TCAATACCCAGATGCCGATGCAGCCAAAAAAGTTTCAGAAGAGACGGAAGGACAATGACT
CCCATGTGTATGCCGTCATCGATGACACCATGGTGTATGGGCACCTGCTGCAGGATGCCA
ACGGGTCCTTCCTCCAGCCTGAGGTGGACACCTACCGGCCCTTCCAGGGCCCCACAGGGG
ACCGCCCACCCTCCCCACCCCCCATATGCTCCAGGGCCCCGACTGCAAAGTTGACCACAG
AGGAGCCATCCCCTGGCTTCCTTCCTGAGTCTGAGAGCGAACCGTATGCCTTCTCCCACC
CCAAAGATGGGAATATAAGCAATGGGAACACTGACACCCCCTTGCTGGATGCCCACAAGC
CCACGGAGCCTGGGGAATAACTTGGACCTGCCCCAGAGACTTTGCATAAAGCAGGGCACG
GAGATGCCCTTTAGGGTTCCCAAAAAGAAACCCCAAAGGAGAGGAATGACATGGAAGGAC
AGCAGGAGGCACCTCCAACTTCTGATTTCCAAGTGGACTCATTCCGATGTTGAGATGTTG
AGAATGATGAATTGTGATCTGGATACAGCCGTCACAGTGCATGTCTTTCTAAACTCAGGA
TGGGTTGAAACCAGCTCGGGATGAGAAGGGAGAGGCTGAGTCGCCCAGGACAGGGTCCCA
GCGAGCCCTGGATTTGAGTTTGGATTTAGACTGCTTCTGGTTGACAATTCTGATCCCTTG
GAGCCCACCTGAGTTCCCGCTTTCACTGGGGTCCCCTGGATGAAAATGTTAATGTGCTTT
TTATTATTATTATTATTTATTTGGTGGTCCTGTGTATTTAAGAAGTCGAGTGGATAGCCA
TGTAGCTCTTTTCACCTGACATAGTGACAACTCATGCTAAATGGTTAGATGGCTGGATTC
TGACTTCTGACCACTAGATAAACATGTGCTCGTCCCCTGGGAGGTAGGAATAATTTGCCG
TCTGTTCAGCCAGAAAAGGGTGTGTCTTTGAGGACCCTGACACACATCTGCTTTGATAAG
AGACTTTCTGGTTCTCTCTCTGAATCTGGTTATCCCACTGCAGAAATCCATCTTGCGTCC
CACTGTCCTTTGACCTAGAAATAAGAGAAATTTCCTTGAGTTGCCATGTGCGGCTCTCGC
AGCTGAGGGGATGCTTTGACATTTAAACAGAAATTTACAGAGTATTTTAATTCTCTTACA
ATGTTTAAAAATAAACCAGAGAGTGGCCACCCATATTAGTTTCCTCATGTGCCACAAATT
AGGTTGCACTTAATATGCTACTGCAACAAATTGCCGCAAACATGGTGGCTTAAAACAACA
CCATTCCTGTCTTAGTGTTCCAGAGATCAGAAGTGCAGAATGGGTCTCACTGAGCTAAAT
CAACGTGTTAGCAGAGCTTTTCTCCTTCTGGAGCCTCCAGGGGAGAATCTGTTTCCTTGC
CTTTTCCAGCTTTTTGAGGCTCCTCACATGCCTTGCCTCTAATGGTGGCAGTGTGACACT
TTTGCTTCCCTCTTCTATTGACAAGGAACTTTCACTTATAAAACCCACCTGGATAAGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGAATAGGAAAAAGAAGATCACCAAGGGCCCGGCTGTGGGTATCTACAATGGTAACG
TCAATACCCAGATGCCGATGCAGCCAAAAAAGTTTCAGAAGAGACGGAAGGACAATGACT
CCCATGTGTATGCCGTCATCGATGACACCATGGTGTATGGGCACCTGCTGCAGGATGCCA
ACGGGTCCTTCCTCCAGCCTGAGGTGGACACCTACCGGCCCTTCCAGGGCCCCACAGGGG
ACCGCCCACCCTCCCCACCCCCCATATGCTCCAGGGCCCCGACTGCAAAGTTGACCACAG
AGGAGCCATCCCCTGGCTTCCTTCCTGAGTCTGAGAGCGAACCGTATGCCTTCTCCCACC
CCAAAGATGGGAATATAAGCAATGGGAACACTGACACCCCCTTGCTGGATGCCCACAAGC
CCACGGAGCCTGGGGAATAACTTGGACCTGCCCCAGAGACTTTGCATAAAGCAGGGCACG
GAGATGCCCTTTAGGGTTCCCAAAAAGAAACCCCAAAGGAGAGGAATGACATGGAAGGAC
AGCAGGAGGCACCTCCAACTTCTGATTTCCAAGTGGACTCATTCCGATGTTGAGATGTTG
AGAATGATGAATTGTGATCTGGATACAGCCGTCACAGTGCATGTCTTTCTAAACTCAGGA
TGGGTTGAAACCAGCTCGGGATGAGAAGGGAGAGGCTGAGTCGCCCAGGACAGGGTCCCA
GCGAGCCCTGGATTTGAGTTTGGATTTAGACTGCTTCTGGTTGACAATTCTGATCCCTTG
GAGCCCACCTGAGTTCCCGCTTTCACTGGGGTCCCCTGGATGAAAATGTTAATGTGCTTT
TTATTATTATTATTATTTATTTGGTGGTCCTGTGTATTTAAGAAGTCGAGTGGATAGCCA
TGTAGCTCTTTTCACCTGACATAGTGACAACTCATGCTAAATGGTTAGATGGCTGGATTC
TGACTTCTGACCACTAGATAAACATGTGCTCGTCCCCTGGGAGGTAGGAATAATTTGCCG
TCTGTTCAGCCAGAAAAGGGTGTGTCTTTGAGGACCCTGACACACATCTGCTTTGATAAG
AGACTTTCTGGTTCTCTCTCTGAATCTGGTTATCCCACTGCAGAAATCCATCTTGCGTCC
CACTGTCCTTTGACCTAGAAATAAGAGAAATTTCCTTGAGTTGCCATGTGCGGCTCTCGC
AGCTGAGGGGATGCTTTGACATTTAAACAGAAATTTACAGAGTATTTTAATTCTCTTACA
ATGTTTAAAAATAAACCAGAGAGTGGCCACCCATATTAGTTTCCTCATGTGCCACAAATT
AGGTTGCACTTAATATGCTACTGCAACAAATTGCCGCAAACATGGTGGCTTAAAACAACA
CCATTCCTGTCTTAGTGTTCCAGAGATCAGAAGTGCAGAATGGGTCTCACTGAGCTAAAT
CAACGTGTTAGCAGAGCTTTTCTCCTTCTGGAGCCTCCAGGGGAGAATCTGTTTCCTTGC
CTTTTCCAGCTTTTTGAGGCTCCTCACATGCCTTGCCTCTAATGGTGGCAGTGTGACACT
TTTGCTTCCCTCTTCTATTGACAAGGAACTTTCACTTATAAAACCCACCTGGATAAGCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q810J0_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q810J0_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               168-1543, - strand, RNAz p=0.972347
               

               
               1422-1539, + strand, RNAz p=0.990225

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               168-1543, - strand, RNAz p=0.972347
               

               
               1422-1539, + strand, RNAz p=0.990225

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               8-1269, gnl|bosTau2|chr9 (21579495-21578230)
               

               
               8-1269, gnl|Hg17|chr3 (45102566-45101271)
               

               
               8-1269, gnl|Mm7|chr9 (122879330-122877861)
               


               
               1314-1543, gnl|bosTau2|chr28 (16227119-16226889)
               

               
               1314-1543, gnl|Hg17|chr10 (70465535-70465750)
               


               
               1328-1540, gnl|bosTau2|chr28 (23774892-23775108)
               


               
               1329-1539, gnl|bosTau2|chr15 (12766603-12766812)
               

               
               1329-1539, gnl|canFam2|chr5 (20086120-20085935)
               

               
               1329-1539, gnl|hg17|chr11 (115816058-115816239)
               

               
               1329-1539, gnl|Hg17|chr11 (115816115-115816302)
               

               
               1329-1539, gnl|mm7|chr9 (46547694-46547496)
               

               
               1329-1539, gnl|Mm7|chr9 (46547643-46547432)
               

               
               1329-1539, gnl|panTro1|chr9 (117818019-117818200)
               

               
               1329-1539, gnl|rheMac2|chr14 (114853813-114853994)
               

               
               1329-1539, gnl|rn3|chr8 (49612961-49612766)
               


               
               1330-1538, gnl|bosTau2|chr11 (64362730-64362518)
               

               
               1330-1538, gnl|Hg17|chr2 (14317804-14317593)
               

               
               1330-1538, gnl|Mm7|chr12 (14609484-14609678)
               


               
               1336-1535, gnl|bosTau2|chr10 (59161081-59161286)
               

               
               1336-1535, gnl|Hg17|chr14 (71879561-71879767)
               

               
               1336-1535, gnl|Mm7|chr12 (80970889-80971081)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-1269, gnl|bosTau2|chr9 (21579495-21578230)
               

               
               8-1269, gnl|Hg17|chr3 (45102566-45101271)
               

               
               8-1269, gnl|Mm7|chr9 (122879330-122877861)
               


               
               1314-1543, gnl|bosTau2|chr28 (16227119-16226889)
               

               
               1314-1543, gnl|Hg17|chr10 (70465535-70465750)
               


               
               1328-1540, gnl|bosTau2|chr28 (23774892-23775108)
               


               
               1329-1539, gnl|bosTau2|chr15 (12766603-12766812)
               

               
               1329-1539, gnl|canFam2|chr5 (20086120-20085935)
               

               
               1329-1539, gnl|hg17|chr11 (115816058-115816239)
               

               
               1329-1539, gnl|Hg17|chr11 (115816115-115816302)
               

               
               1329-1539, gnl|mm7|chr9 (46547694-46547496)
               

               
               1329-1539, gnl|Mm7|chr9 (46547643-46547432)
               

               
               1329-1539, gnl|panTro1|chr9 (117818019-117818200)
               

               
               1329-1539, gnl|rheMac2|chr14 (114853813-114853994)
               

               
               1329-1539, gnl|rn3|chr8 (49612961-49612766)
               


               
               1330-1538, gnl|bosTau2|chr11 (64362730-64362518)
               

               
               1330-1538, gnl|Hg17|chr2 (14317804-14317593)
               

               
               1330-1538, gnl|Mm7|chr12 (14609484-14609678)
               


               
               1336-1535, gnl|bosTau2|chr10 (59161081-59161286)
               

               
               1336-1535, gnl|Hg17|chr14 (71879561-71879767)
               

               
               1336-1535, gnl|Mm7|chr12 (80970889-80971081)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	168-1543, - strand, RNAz p=0.972347
	1422-1539, + strand, RNAz p=0.990225

	8-1269, gnl\|bosTau2\|chr9 (21579495-21578230)
	8-1269, gnl\|Hg17\|chr3 (45102566-45101271)
	8-1269, gnl\|Mm7\|chr9 (122879330-122877861)

	1314-1543, gnl\|bosTau2\|chr28 (16227119-16226889)
	1314-1543, gnl\|Hg17\|chr10 (70465535-70465750)

	1328-1540, gnl\|bosTau2\|chr28 (23774892-23775108)

	1329-1539, gnl\|bosTau2\|chr15 (12766603-12766812)
	1329-1539, gnl\|canFam2\|chr5 (20086120-20085935)
	1329-1539, gnl\|hg17\|chr11 (115816058-115816239)
	1329-1539, gnl\|Hg17\|chr11 (115816115-115816302)
	1329-1539, gnl\|mm7\|chr9 (46547694-46547496)
	1329-1539, gnl\|Mm7\|chr9 (46547643-46547432)
	1329-1539, gnl\|panTro1\|chr9 (117818019-117818200)
	1329-1539, gnl\|rheMac2\|chr14 (114853813-114853994)
	1329-1539, gnl\|rn3\|chr8 (49612961-49612766)

	1330-1538, gnl\|bosTau2\|chr11 (64362730-64362518)
	1330-1538, gnl\|Hg17\|chr2 (14317804-14317593)
	1330-1538, gnl\|Mm7\|chr12 (14609484-14609678)

	1336-1535, gnl\|bosTau2\|chr10 (59161081-59161286)
	1336-1535, gnl\|Hg17\|chr14 (71879561-71879767)
	1336-1535, gnl\|Mm7\|chr12 (80970889-80971081)