Ss1.1-Pig4-TMW8063I08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTTTTTTTTTTTTGACACAAAACATCTGTTTATTTCCCAGGAAGGGGAG AATTCGGGGCGCTCGGGGAGTTCCCAGCCGTCCTCCTCACTTCCAGAAGAGCACATTCCA GAAGAGCAGCCAGCACGGGTAGAGGCCCAGAGCCAACAGCGGGTAAAGCAGGGCGCCATA GACGTGGTGTTCCAGCACGCCCTGTGCCAGCGCTGTCAGGAAGAGCTGCCAGCCCTCCGC CAGGGAAAGCGGTGCCTCCTGCAGCTCCCGCCACAGGAACAGGCTACTCAGGAGGACAGC TGCTGGGCTCGTCAGCACCAGCAGGGCAGCATAGAGGGGCCGGGGCCCAGAGGGCTTGGT GAGTGCGGCGGCGGGCACCATGGTAGCAGCCAGCAGAAAGCCCAGAGAGAAGTTGGTGAG GGTGATGCAGGCCAGCTGTAGGGCCAGGCAGATCAAGGCTACCAGCTTCAGGGCCATCCA GCCCCTGTCTGGGGCCTGTGTGCTCACGACCCGGTGGGTGTTGTGTGGAAGCGCCAGGCC AGCTGCATAGACAGCCAGCAGCGTCAGCACCACGGCCTCGGCCTCAGCCACGGGGAAGTG CTGGGCGGCCACATGTTGACCCAGCACCGGCAGGAGGTAGAGGGCCAGGCCCACCGCCTG GGAGATCAGCAAGGGCGCCACAAGCGAGGCCAGCCCCACACTCTGTGTTGGCGGGAAGGG AGGACTGGATCCGGCGGTCCCCCCAGCCTCCTGGGGACCCACGCCAGCCTCATGCAGCTG CATCCACAGTTCCAGAGCCTTGAGACCAAGGACCAGGAGCAGAAAGCCGGCGGCCGGCAT GTAGAGGCCAATGGAGACGAAGCGGGAGAGCGCGGGCAGCAGGTAGAAGAAGAAGGACTG ATGCAGACGCTCCAGGAGGTGGTTGAGCTTGCGGAACATGCCCTCCAGAGCCTTGCCCAC TGCCACCAGGTCGTACTTGTACTGGCGGAAGCTATTGATGCCACGGAGAGTTAGAGCCTC CACGCGGTAGCGCAGGAAGAGGCCGTGGGGGCCGTGGGGGCGGCCAGAGGCCTGTTGCAG AACCATGAGTAGCAGTGTCTGCACACTCTGCAGTGGCCTGTCTACTGATGTCCAGTCCTG GGGCTGCAGCTTGCCCTGCAGTGTGCACAGCAGGCCCCCTTTCTGGCAGAAAGTCTGGAA GAGGTTGAGCAGGTCCAAGTTGGGCAGCTGCCCGTTGAGCCCCTCCACAGCCACGTCCAG GCTGGTGATCACATCACTGCTTAGCTCCAAGGCCACAGCCACCTGGATGGCCCCCGCCCG GCCCTGCAGAGCGGAGGACTGCATACCAGTGACATTGACGTCGTGGTAGGCTTCAAGCCA GGCCTCAGTGCCCAGGAGGTCGTGTTCTGTCACCAGGAAGATGATGTCTTTGGCCCAGTA GATCTGCCCCCGGAAGTGGGCAGCAAGTGCCAGCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTTTTTTTTTTTTGACACAAAACATCTGTTTATTTCCCAGGAAGGGGAG AATTCGGGGCGCTCGGGGAGTTCCCAGCCGTCCTCCTCACTTCCAGAAGAGCACATTCCA GAAGAGCAGCCAGCACGGGTAGAGGCCCAGAGCCAACAGCGGGTAAAGCAGGGCGCCATA GACGTGGTGTTCCAGCACGCCCTGTGCCAGCGCTGTCAGGAAGAGCTGCCAGCCCTCCGC CAGGGAAAGCGGTGCCTCCTGCAGCTCCCGCCACAGGAACAGGCTACTCAGGAGGACAGC TGCTGGGCTCGTCAGCACCAGCAGGGCAGCATAGAGGGGCCGGGGCCCAGAGGGCTTGGT GAGTGCGGCGGCGGGCACCATGGTAGCAGCCAGCAGAAAGCCCAGAGAGAAGTTGGTGAG GGTGATGCAGGCCAGCTGTAGGGCCAGGCAGATCAAGGCTACCAGCTTCAGGGCCATCCA GCCCCTGTCTGGGGCCTGTGTGCTCACGACCCGGTGGGTGTTGTGTGGAAGCGCCAGGCC AGCTGCATAGACAGCCAGCAGCGTCAGCACCACGGCCTCGGCCTCAGCCACGGGGAAGTG CTGGGCGGCCACATGTTGACCCAGCACCGGCAGGAGGTAGAGGGCCAGGCCCACCGCCTG GGAGATCAGCAAGGGCGCCACAAGCGAGGCCAGCCCCACACTCTGTGTTGGCGGGAAGGG AGGACTGGATCCGGCGGTCCCCCCAGCCTCCTGGGGACCCACGCCAGCCTCATGCAGCTG CATCCACAGTTCCAGAGCCTTGAGACCAAGGACCAGGAGCAGAAAGCCGGCGGCCGGCAT GTAGAGGCCAATGGAGACGAAGCGGGAGAGCGCGGGCAGCAGGTAGAAGAAGAAGGACTG ATGCAGACGCTCCAGGAGGTGGTTGAGCTTGCGGAACATGCCCTCCAGAGCCTTGCCCAC TGCCACCAGGTCGTACTTGTACTGGCGGAAGCTATTGATGCCACGGAGAGTTAGAGCCTC CACGCGGTAGCGCAGGAAGAGGCCGTGGGGGCCGTGGGGGCGGCCAGAGGCCTGTTGCAG AACCATGAGTAGCAGTGTCTGCACACTCTGCAGTGGCCTGTCTACTGATGTCCAGTCCTG GGGCTGCAGCTTGCCCTGCAGTGTGCACAGCAGGCCCCCTTTCTGGCAGAAAGTCTGGAA GAGGTTGAGCAGGTCCAAGTTGGGCAGCTGCCCGTTGAGCCCCTCCACAGCCACGTCCAG GCTGGTGATCACATCACTGCTTAGCTCCAAGGCCACAGCCACCTGGATGGCCCCCGCCCG GCCCTGCAGAGCGGAGGACTGCATACCAGTGACATTGACGTCGTGGTAGGCTTCAAGCCA GGCCTCAGTGCCCAGGAGGTCGTGTTCTGTCACCAGGAAGATGATGTCTTTGGCCCAGTA GATCTGCCCCCGGAAGTGGGCAGCAAGTGCCAGCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 203-345, + strand, RNAz p=0.915464 | |
| 215-345, - strand, RNAz p=0.956678 | |
| 588-705, - strand, RNAz p=0.587583 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 203-345, + strand, RNAz p=0.915464 | |
| 215-345, - strand, RNAz p=0.956678 | |
| 588-705, - strand, RNAz p=0.587583 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC006383, - |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 30-345, gnl|bosTau2|chr14 (153360-153666) | |
| 30-345, gnl|canFam2|chr13 (40610616-40610822) | |
| 30-345, gnl|danRer3|chrNA (33696127-33696322) | |
| 30-345, gnl|dasNov1|scaffold_67016 (5949-5743) | |
| 30-345, gnl|echTel1|scaffold_299930 (9765-9937) | |
| 30-345, gnl|fr1|chrUn (241472663-241472934) | |
| 30-345, gnl|hg17|chr2 (110099701-110099907) | |
| 30-345, gnl|Hg17|chr8 (145213097-145212768) | |
| 30-345, gnl|mm7|chr15 (76417137-76417343) | |
| 30-345, gnl|Mm7|chr15 (76417447-76417130) | |
| 30-345, gnl|monDom2|scaffold_79 (2316150-2316356) | |
| 30-345, gnl|oryCun1|scaffold_184863 (3698-3904) | |
| 30-345, gnl|panTro1|chr12 (113634709-113634503) | |
| 30-345, gnl|rheMac2|chr13 (109657845-109658051) | |
| 30-345, gnl|rn3|chr7 (114416476-114416682) | |
| 30-345, gnl|tetNig1|chr15_random (369165-368884) | |
| 30-345, gnl|xenTro1|scaffold_847 (214905-214705) | |
| 511-705, gnl|bosTau2|chr14 (154012-154206) | |
| 511-705, gnl|Hg17|chr8 (145212371-145212177) | |
| 511-705, gnl|Mm7|chr15 (76416758-76416564) | |
| 799-955, gnl|bosTau2|chr14 (154603-154759) | |
| 799-955, gnl|canFam2|chr13 (40609460-40609567) | |
| 799-955, gnl|danRer3|chrNA (33689643-33689749) | |
| 799-955, gnl|echTel1|scaffold_62949 (757-649) | |
| 799-955, gnl|fr1|chrUn (241471781-241471880) | |
| 799-955, gnl|hg17|chr8 (145211610-145211718) | |
| 799-955, gnl|Hg17|chr8 (145211766-145211610) | |
| 799-955, gnl|loxAfr1|scaffold_105370 (2238-2124) | |
| 799-955, gnl|mm7|chr15 (76416014-76416122) | |
| 799-955, gnl|Mm7|chr15 (76416170-76416014) | |
| 799-955, gnl|monDom2|scaffold_79 (2314645-2314752) | |
| 799-955, gnl|oryCun1|scaffold_79221 (416-524) | |
| 799-955, gnl|panTro1|chr7 (148519676-148519784) | |
| 799-955, gnl|rheMac2|chr8 (146698932-146699040) | |
| 799-955, gnl|rn3|chr7 (114415350-114415458) | |
| 799-955, gnl|tetNig1|chr15_random (370018-369912) | |
| 799-955, gnl|xenTro1|scaffold_847 (217893-217785) | |
| 1132-1351, gnl|bosTau2|chr14 (155106-155325) | |
| 1132-1351, gnl|canFam2|chr13 (40608891-40609034) | |
| 1132-1351, gnl|danRer3|chrNA (33685743-33685876) | |
| 1132-1351, gnl|echTel1|scaffold_62949 (1333-1190) | |
| 1132-1351, gnl|fr1|chrUn (241471207-241471340) | |
| 1132-1351, gnl|hg17|chr8 (145211013-145211156) | |
| 1132-1351, gnl|Hg17|chr8 (145211239-145211020) | |
| 1132-1351, gnl|loxAfr1|scaffold_105370 (2832-2689) | |
| 1132-1351, gnl|mm7|chr15 (76415444-76415587) | |
| 1132-1351, gnl|Mm7|chr15 (76415670-76415451) | |
| 1132-1351, gnl|monDom2|scaffold_79 (2311238-2311381) | |
| 1132-1351, gnl|panTro1|chr7 (148519079-148519222) | |
| 1132-1351, gnl|rheMac2|chr8 (146698335-146698478) | |
| 1132-1351, gnl|rn3|chr7 (114414786-114414929) | |
| 1132-1351, gnl|tetNig1|chr15_random (370595-370452) | |
| 1132-1351, gnl|xenTro1|scaffold_847 (219421-219278) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 30-345, gnl|bosTau2|chr14 (153360-153666) | |
| 30-345, gnl|canFam2|chr13 (40610616-40610822) | |
| 30-345, gnl|danRer3|chrNA (33696127-33696322) | |
| 30-345, gnl|dasNov1|scaffold_67016 (5949-5743) | |
| 30-345, gnl|echTel1|scaffold_299930 (9765-9937) | |
| 30-345, gnl|fr1|chrUn (241472663-241472934) | |
| 30-345, gnl|hg17|chr2 (110099701-110099907) | |
| 30-345, gnl|Hg17|chr8 (145213097-145212768) | |
| 30-345, gnl|mm7|chr15 (76417137-76417343) | |
| 30-345, gnl|Mm7|chr15 (76417447-76417130) | |
| 30-345, gnl|monDom2|scaffold_79 (2316150-2316356) | |
| 30-345, gnl|oryCun1|scaffold_184863 (3698-3904) | |
| 30-345, gnl|panTro1|chr12 (113634709-113634503) | |
| 30-345, gnl|rheMac2|chr13 (109657845-109658051) | |
| 30-345, gnl|rn3|chr7 (114416476-114416682) | |
| 30-345, gnl|tetNig1|chr15_random (369165-368884) | |
| 30-345, gnl|xenTro1|scaffold_847 (214905-214705) | |
| 511-705, gnl|bosTau2|chr14 (154012-154206) | |
| 511-705, gnl|Hg17|chr8 (145212371-145212177) | |
| 511-705, gnl|Mm7|chr15 (76416758-76416564) | |
| 799-955, gnl|bosTau2|chr14 (154603-154759) | |
| 799-955, gnl|canFam2|chr13 (40609460-40609567) | |
| 799-955, gnl|danRer3|chrNA (33689643-33689749) | |
| 799-955, gnl|echTel1|scaffold_62949 (757-649) | |
| 799-955, gnl|fr1|chrUn (241471781-241471880) | |
| 799-955, gnl|hg17|chr8 (145211610-145211718) | |
| 799-955, gnl|Hg17|chr8 (145211766-145211610) | |
| 799-955, gnl|loxAfr1|scaffold_105370 (2238-2124) | |
| 799-955, gnl|mm7|chr15 (76416014-76416122) | |
| 799-955, gnl|Mm7|chr15 (76416170-76416014) | |
| 799-955, gnl|monDom2|scaffold_79 (2314645-2314752) | |
| 799-955, gnl|oryCun1|scaffold_79221 (416-524) | |
| 799-955, gnl|panTro1|chr7 (148519676-148519784) | |
| 799-955, gnl|rheMac2|chr8 (146698932-146699040) | |
| 799-955, gnl|rn3|chr7 (114415350-114415458) | |
| 799-955, gnl|tetNig1|chr15_random (370018-369912) | |
| 799-955, gnl|xenTro1|scaffold_847 (217893-217785) | |
| 1132-1351, gnl|bosTau2|chr14 (155106-155325) | |
| 1132-1351, gnl|canFam2|chr13 (40608891-40609034) | |
| 1132-1351, gnl|danRer3|chrNA (33685743-33685876) | |
| 1132-1351, gnl|echTel1|scaffold_62949 (1333-1190) | |
| 1132-1351, gnl|fr1|chrUn (241471207-241471340) | |
| 1132-1351, gnl|hg17|chr8 (145211013-145211156) | |
| 1132-1351, gnl|Hg17|chr8 (145211239-145211020) | |
| 1132-1351, gnl|loxAfr1|scaffold_105370 (2832-2689) | |
| 1132-1351, gnl|mm7|chr15 (76415444-76415587) | |
| 1132-1351, gnl|Mm7|chr15 (76415670-76415451) | |
| 1132-1351, gnl|monDom2|scaffold_79 (2311238-2311381) | |
| 1132-1351, gnl|panTro1|chr7 (148519079-148519222) | |
| 1132-1351, gnl|rheMac2|chr8 (146698335-146698478) | |
| 1132-1351, gnl|rn3|chr7 (114414786-114414929) | |
| 1132-1351, gnl|tetNig1|chr15_random (370595-370452) | |
| 1132-1351, gnl|xenTro1|scaffold_847 (219421-219278) |
| Expressed library(ies): 22 entry(ies) | More info |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
| amn (0.417711) | |
| cov (0.396458) | |
| elu (0.385356) | |
| nep (0.36785) | |
| fty (0.351679) | |
| ecc (0.345105) | |
| cag (0.302389) | |
| pty (0.285429) | |
| cga (0.279096) | |
| nmm (0.265604) | |
| col (0.195008) | |
| nlu (0.191681) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| ute (0.132784) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| jej (0.0989218) |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| cov (0.396458) | |
| elu (0.385356) | |
| nep (0.36785) | |
| fty (0.351679) | |
| ecc (0.345105) | |
| cag (0.302389) | |
| pty (0.285429) | |
| cga (0.279096) | |
| nmm (0.265604) | |
| col (0.195008) | |
| nlu (0.191681) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| ute (0.132784) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| jej (0.0989218) |