Ss1.1-Pig4-TMW8063I09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCTTATTTTGGTGGAGAAGCTCGCTGTGATGCTGAGGCTGGACAAGGGGATGACTACGA TCCCAGAGAGCTCATCTGCGGTGCCTGTTCTGATGTGTCCAGGGCTCAGATGTGTCCAAA ACATGGCACAGACTTTTTGGAATACAAATGTCGCTACTGCTGCTCAGTGGCTGTCTTTTT CTGTTTTGGAACGACGCATTTTTGTAATGCTTGTCATGATGATTTTCAGAGAATGACTAG CATTCCTAAGGAAGAATTACCACACTGTCCTGCAGGTCCCAAAGGCAAACAGTTAGAAGG AACCGAGTGTCCTCTCCATGTTGTTCACCCCGCCACTGGGGAAGAGTTTGCTCTGGGCTG TGGAGTGTGCAGAAATGCTCACACTTTTTAGAATGCTCAGACTCTTCTGTCTACAGAGCG AAAAGTTGCCTTCATCCGTCAAGCGGATGTGGTGAAGTTTAAACCCTGCTCAGGATAAGG ACGGGACCATTTTTACATCCATTGAAACGAACCATTCACAGTGCAAGAAGGATGCCAAAT ACCATGTACATAATTCTTGCGATGGAAAGTTTCTCCATTAGTTCACTTTATCTTCTTTTG AACCAAGACATCAAACTTGTGAAGTGTTTGCATGTGGCCATTATCGTCATTGGCCTGTGA AGCATTGGACATTTATAGATAATTGATATCAAAGAATTGCCATGCCCATGGACTAAGAAT GATGCTGGCTTTCAAGCAAAAAAGAAAAATAATCATTGTTTATTGTATACTGCCTTTTTG TAATCCTGTACAATTGCATCACGGGTGGGGATAAAAAGAGGAATATTCTGGTTTATTTCC TAGACTGTTATTTAAAAAAAAAAAAAATTGTGTTAGGACAGCATATAAATGTAATAAGTA TCACCTTGTATATAAAGATATCAATGTTTGTCCTGTATAAGAACTACTCAATTACAAATG CAGTTTCATTTAAACTTCTAGGTTAAGTTTGAGCCTGAAATTTTAATGAAGTGCAATACT GAGTGTGCCTCATCTTGCAGCCGTAAACATATTGGAATGTACATGTCAATAAACCACTGT ACATTTTTATACAGTGATGAAGTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCTTATTTTGGTGGAGAAGCTCGCTGTGATGCTGAGGCTGGACAAGGGGATGACTACGA TCCCAGAGAGCTCATCTGCGGTGCCTGTTCTGATGTGTCCAGGGCTCAGATGTGTCCAAA ACATGGCACAGACTTTTTGGAATACAAATGTCGCTACTGCTGCTCAGTGGCTGTCTTTTT CTGTTTTGGAACGACGCATTTTTGTAATGCTTGTCATGATGATTTTCAGAGAATGACTAG CATTCCTAAGGAAGAATTACCACACTGTCCTGCAGGTCCCAAAGGCAAACAGTTAGAAGG AACCGAGTGTCCTCTCCATGTTGTTCACCCCGCCACTGGGGAAGAGTTTGCTCTGGGCTG TGGAGTGTGCAGAAATGCTCACACTTTTTAGAATGCTCAGACTCTTCTGTCTACAGAGCG AAAAGTTGCCTTCATCCGTCAAGCGGATGTGGTGAAGTTTAAACCCTGCTCAGGATAAGG ACGGGACCATTTTTACATCCATTGAAACGAACCATTCACAGTGCAAGAAGGATGCCAAAT ACCATGTACATAATTCTTGCGATGGAAAGTTTCTCCATTAGTTCACTTTATCTTCTTTTG AACCAAGACATCAAACTTGTGAAGTGTTTGCATGTGGCCATTATCGTCATTGGCCTGTGA AGCATTGGACATTTATAGATAATTGATATCAAAGAATTGCCATGCCCATGGACTAAGAAT GATGCTGGCTTTCAAGCAAAAAAGAAAAATAATCATTGTTTATTGTATACTGCCTTTTTG TAATCCTGTACAATTGCATCACGGGTGGGGATAAAAAGAGGAATATTCTGGTTTATTTCC TAGACTGTTATTTAAAAAAAAAAAAAATTGTGTTAGGACAGCATATAAATGTAATAAGTA TCACCTTGTATATAAAGATATCAATGTTTGTCCTGTATAAGAACTACTCAATTACAAATG CAGTTTCATTTAAACTTCTAGGTTAAGTTTGAGCCTGAAATTTTAATGAAGTGCAATACT GAGTGTGCCTCATCTTGCAGCCGTAAACATATTGGAATGTACATGTCAATAAACCACTGT ACATTTTTATACAGTGATGAAGTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 352-471, - strand, RNAz p=0.518371 | |
| 630-744, - strand, RNAz p=0.946536 | |
| 946-1104, + strand, RNAz p=0.938975 | |
| 988-1104, - strand, RNAz p=0.969981 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 352-471, - strand, RNAz p=0.518371 | |
| 630-744, - strand, RNAz p=0.946536 | |
| 946-1104, + strand, RNAz p=0.938975 | |
| 988-1104, - strand, RNAz p=0.969981 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_015057, + |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 1-112, gnl|bosTau2|chr12 (26161798-26161909) | |
| 1-112, gnl|canFam2|chr22 (33568380-33568534) | |
| 1-112, gnl|danRer3|chr7 (47386947-47387099) | |
| 1-112, gnl|echTel1|scaffold_318022 (97766-97920) | |
| 1-112, gnl|fr1|chrUn (155221953-155222091) | |
| 1-112, gnl|galGal2|chr1 (151151989-151151871) | |
| 1-112, gnl|hg17|chr13 (76523915-76524069) | |
| 1-112, gnl|Hg17|chr13 (76524055-76523944) | |
| 1-112, gnl|loxAfr1|scaffold_10956 (25194-25040) | |
| 1-112, gnl|mm7|chr14 (97550508-97550638) | |
| 1-112, gnl|Mm7|chr14 (97550624-97550513) | |
| 1-112, gnl|monDom2|scaffold_8 (14654558-14654722) | |
| 1-112, gnl|oryCun1|scaffold_210850 (111214-111369) | |
| 1-112, gnl|panTro1|chr14 (59100284-59100438) | |
| 1-112, gnl|rn3|chr15 (87144919-87145058) | |
| 1-112, gnl|tetNig1|chr2 (8185943-8186081) | |
| 1-112, gnl|xenTro1|scaffold_141 (1877233-1877093) | |
| 273-1104, gnl|bosTau2|chr12 (26164693-26165528) | |
| 273-1104, gnl|canFam2|chr22 (33561173-33561682) | |
| 273-1104, gnl|danRer3|chr7 (47380668-47381234) | |
| 273-1104, gnl|dasNov1|scaffold_35607 (9314-8816) | |
| 273-1104, gnl|echTel1|scaffold_318022 (92055-92570) | |
| 273-1104, gnl|fr1|chrUn (155220547-155221073) | |
| 273-1104, gnl|galGal2|chr1 (151154322-151153821) | |
| 273-1104, gnl|hg17|chr13 (76516794-76517308) | |
| 273-1104, gnl|Hg17|chr13 (76517632-76516795) | |
| 273-1104, gnl|loxAfr1|scaffold_10956 (32161-31653) | |
| 273-1104, gnl|mm7|chr14 (97545888-97546394) | |
| 273-1104, gnl|Mm7|chr14 (97546713-97545889) | |
| 273-1104, gnl|monDom2|scaffold_8 (14641101-14641606) | |
| 273-1104, gnl|oryCun1|scaffold_210850 (108024-108535) | |
| 273-1104, gnl|panTro1|chr14 (59093163-59093675) | |
| 273-1104, gnl|rheMac2|chr17 (57528179-57528692) | |
| 273-1104, gnl|rn3|chr15 (87140316-87140817) | |
| 273-1104, gnl|tetNig1|chr2 (8184484-8185018) | |
| 273-1104, gnl|xenTro1|scaffold_141 (1880031-1879469) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-112, gnl|bosTau2|chr12 (26161798-26161909) | |
| 1-112, gnl|canFam2|chr22 (33568380-33568534) | |
| 1-112, gnl|danRer3|chr7 (47386947-47387099) | |
| 1-112, gnl|echTel1|scaffold_318022 (97766-97920) | |
| 1-112, gnl|fr1|chrUn (155221953-155222091) | |
| 1-112, gnl|galGal2|chr1 (151151989-151151871) | |
| 1-112, gnl|hg17|chr13 (76523915-76524069) | |
| 1-112, gnl|Hg17|chr13 (76524055-76523944) | |
| 1-112, gnl|loxAfr1|scaffold_10956 (25194-25040) | |
| 1-112, gnl|mm7|chr14 (97550508-97550638) | |
| 1-112, gnl|Mm7|chr14 (97550624-97550513) | |
| 1-112, gnl|monDom2|scaffold_8 (14654558-14654722) | |
| 1-112, gnl|oryCun1|scaffold_210850 (111214-111369) | |
| 1-112, gnl|panTro1|chr14 (59100284-59100438) | |
| 1-112, gnl|rn3|chr15 (87144919-87145058) | |
| 1-112, gnl|tetNig1|chr2 (8185943-8186081) | |
| 1-112, gnl|xenTro1|scaffold_141 (1877233-1877093) | |
| 273-1104, gnl|bosTau2|chr12 (26164693-26165528) | |
| 273-1104, gnl|canFam2|chr22 (33561173-33561682) | |
| 273-1104, gnl|danRer3|chr7 (47380668-47381234) | |
| 273-1104, gnl|dasNov1|scaffold_35607 (9314-8816) | |
| 273-1104, gnl|echTel1|scaffold_318022 (92055-92570) | |
| 273-1104, gnl|fr1|chrUn (155220547-155221073) | |
| 273-1104, gnl|galGal2|chr1 (151154322-151153821) | |
| 273-1104, gnl|hg17|chr13 (76516794-76517308) | |
| 273-1104, gnl|Hg17|chr13 (76517632-76516795) | |
| 273-1104, gnl|loxAfr1|scaffold_10956 (32161-31653) | |
| 273-1104, gnl|mm7|chr14 (97545888-97546394) | |
| 273-1104, gnl|Mm7|chr14 (97546713-97545889) | |
| 273-1104, gnl|monDom2|scaffold_8 (14641101-14641606) | |
| 273-1104, gnl|oryCun1|scaffold_210850 (108024-108535) | |
| 273-1104, gnl|panTro1|chr14 (59093163-59093675) | |
| 273-1104, gnl|rheMac2|chr17 (57528179-57528692) | |
| 273-1104, gnl|rn3|chr15 (87140316-87140817) | |
| 273-1104, gnl|tetNig1|chr2 (8184484-8185018) | |
| 273-1104, gnl|xenTro1|scaffold_141 (1880031-1879469) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| sug (0.254582) | |
| tra (0.246184) | |
| cbl (0.229595) | |
| cje (0.165235) | |
| fco (0.157208) | |
| lin (0.145603) | |
| spl (0.143184) | |
| pty (0.142714) | |
| csk (0.140746) | |
| nca (0.136874) | |
| che (0.136314) | |
| kid (0.129735) | |
| ova (0.129132) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sug (0.254582) | |
| tra (0.246184) | |
| cbl (0.229595) | |
| cje (0.165235) | |
| fco (0.157208) | |
| lin (0.145603) | |
| spl (0.143184) | |
| pty (0.142714) | |
| csk (0.140746) | |
| nca (0.136874) | |
| che (0.136314) | |
| kid (0.129735) | |
| ova (0.129132) |