Ss1.1-Pig4-TMW8063I13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCGCGATCTAGCAACGACAAGAGCCGTGACTACACTCGCCCTGACCTGCCTTCTGGTGAC AACCAGCCCTCACTGGACCAAACCATGGCCGCTGCCTTCGGTGCACCTGGTATAATGTCA GCCTCCCCGTATGCAGGAGCTGGTTTCCCTCCCACCTTTGCAATTCCTCAAGCCGCAGGC CTCTCTGTCCCTAACGTGCATGGGGCCCTGGCTCCTCTGGCTATCCCGTCAGCAGCGGCA GCGGCGGCAGCAGCAGGCCGGATCGCCATTCCAGGTCTGGCAGGGGCAGGAAATTCCGTC CTGCTGGTCAGCAACCTCAATCCCGAGAGAGTCACACCCCAAAGCCTCTTTATTCTTTTC GGCGTATATGGTGATGTGCAGCGGGTGAAGATCCTGTTCAACAAGAAGGAGAATGCCCTG GTGCAGATGGCAGACGGGAGCCAGGCTCAGCTGGCCATGAGCCACCTCAATGGGCACAAG CTGCATGGAAAGCCCGTGCGCATCACGCTCTCCAAGCACCAGAACGTGCAGCTGCCTCGT GAGGGCCAGGAGGACCAGGGCCTCACGAAGGACTATGGCAACTCGCCCTTGCACCGTTTC AAGAAGCCGGGCTCCAAGAACTTCCAGAACATCTTCCCACCCTCGGCCACCTTGCACCTC TCCAATATCCCGCCCTCCATCTCTGAGGAAGATCTCAAGATTCTCTTCTCCAGCAACGGT GGTATCGTCAAAGGGTTCAAGTTCTTCCAGAAGGACCGCAAGATGGCACTGATCCAGATG GGCTCTGTGGAGGAAGCCATCCAGGCGCTTATTGACCTGCACAACCACGACCTGGGTGAG AACCACCACCTGCGCGTGTCTTTCTCCAAGTCCACCATCTAGGCCGCTGTGGACCAGCCT GCCGGGCACCCGGCAACAACTTCCATCATTCCAGAAAAAAAGCCACTTTAAAAGCAGCTG AAGTGACCTTAAAAGACCAGAGATTTTATTTTTTTAAAAGAGAAATCAGTTTACCTGTTT TTAAAAAATTAAATCTAAATCTTTTGTTCACCTTGGGGAGATGGGGTGCTGGCCTCAGGC CCTTGGTGACAGTCAGCACAGCCTGCTCCCAGCCCCTCGCCTGTGCCTTCTGCAGCCTGT GGGCGGGCGCTCCCAAACCTCCACTTGGCTCTCTTGTGCCTTAAACCCGCTGCTCTGGCA GGGCCTTGTTGGGGTGTTAAGACGCGTAGGGGTTTGGGGGCCCAAGGACTCCACCTCCCG TGGGATCATGTGCCTGGTGTTGTGGGAGGCTGCAGGCGTCTGGCCGACACCCCTAATCCT TTAATCAAGTGTGTGATTTCCCCCCTCCCCAGCCCCAAGGGCCTTCCTTGGTTGGGTGAG ACCCCAGGGTGTGTCCCTGTGCTTCTTCAGCTCTGTTTCCACTGTAATCTCTGTATTATG CTTTGATGCAGCTGCAGACGTCGTGCCTAGCAATATTTCCAGTTGACCAAATATTCTAAT CTTTTTCATTTATATGCAAAAGAAATAGTTTTAAGTAACTTTTTATATAGCAAGATGATA AAAATTGTATGAGTGTAACCTAATTTTTCTCCTTGTGCTATGACCTTGTATACTGTACTT TTATTTTATTCCTTGGCAGTAAGTTGCAGGGCAGGTTCTAGTTTCCAGGGCAGACACAGC GGGGCCGGCAAGGCGCCGGGGCGCGAAGCCCAGGCTCTGTCTGAGACCTCCAGATGCCTT ACACCCAGCTGTCCTCTAGTGAGGACAGGCGCTCTTAAACTTTCAGGGTTTCTTTTTTTC CTGAAAATTTTGGACCAAAGTTTTGTTTCTGCTTCATGTCTGCCTCTATTGCTGGGACCC CAGGAGGTGGGGCAGCTGCCCTTCCGTCTTAGTGCCTCGTCCTGCATCCGGGTCCAGGGG GCTCCCTGTGCAGACCTTGTGCTGGTCAGCTCCCCCCTTTGGGGCCTGGACCTCCAATTT CCGTGTGGGGTGGAACAAGGGTGTAAATATTTATAATTTTTTATACCTGTTGTAAGACGT GAGAGGCAGCAGCAAATGCGGTTTTTTACGGTGACACAGATGTATATTTTGATAACAGCA ATTACAGGCCCAGTATTGTACGGAGCATGGCAGTCCACTGCCCACCGCCGGCTTGTAATG CAGAGAGAACTGAATTAAAGCAATTTTATAACAACTCCTACCTTTTCTGTAGGCTCTTTT TTCCTGTCCACATTGTAGAAGGTGGTTTGGCCAGTCTGTACCGGACTTTGAATAAACTCT CTGTACCCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCGCGATCTAGCAACGACAAGAGCCGTGACTACACTCGCCCTGACCTGCCTTCTGGTGAC AACCAGCCCTCACTGGACCAAACCATGGCCGCTGCCTTCGGTGCACCTGGTATAATGTCA GCCTCCCCGTATGCAGGAGCTGGTTTCCCTCCCACCTTTGCAATTCCTCAAGCCGCAGGC CTCTCTGTCCCTAACGTGCATGGGGCCCTGGCTCCTCTGGCTATCCCGTCAGCAGCGGCA GCGGCGGCAGCAGCAGGCCGGATCGCCATTCCAGGTCTGGCAGGGGCAGGAAATTCCGTC CTGCTGGTCAGCAACCTCAATCCCGAGAGAGTCACACCCCAAAGCCTCTTTATTCTTTTC GGCGTATATGGTGATGTGCAGCGGGTGAAGATCCTGTTCAACAAGAAGGAGAATGCCCTG GTGCAGATGGCAGACGGGAGCCAGGCTCAGCTGGCCATGAGCCACCTCAATGGGCACAAG CTGCATGGAAAGCCCGTGCGCATCACGCTCTCCAAGCACCAGAACGTGCAGCTGCCTCGT GAGGGCCAGGAGGACCAGGGCCTCACGAAGGACTATGGCAACTCGCCCTTGCACCGTTTC AAGAAGCCGGGCTCCAAGAACTTCCAGAACATCTTCCCACCCTCGGCCACCTTGCACCTC TCCAATATCCCGCCCTCCATCTCTGAGGAAGATCTCAAGATTCTCTTCTCCAGCAACGGT GGTATCGTCAAAGGGTTCAAGTTCTTCCAGAAGGACCGCAAGATGGCACTGATCCAGATG GGCTCTGTGGAGGAAGCCATCCAGGCGCTTATTGACCTGCACAACCACGACCTGGGTGAG AACCACCACCTGCGCGTGTCTTTCTCCAAGTCCACCATCTAGGCCGCTGTGGACCAGCCT GCCGGGCACCCGGCAACAACTTCCATCATTCCAGAAAAAAAGCCACTTTAAAAGCAGCTG AAGTGACCTTAAAAGACCAGAGATTTTATTTTTTTAAAAGAGAAATCAGTTTACCTGTTT TTAAAAAATTAAATCTAAATCTTTTGTTCACCTTGGGGAGATGGGGTGCTGGCCTCAGGC CCTTGGTGACAGTCAGCACAGCCTGCTCCCAGCCCCTCGCCTGTGCCTTCTGCAGCCTGT GGGCGGGCGCTCCCAAACCTCCACTTGGCTCTCTTGTGCCTTAAACCCGCTGCTCTGGCA GGGCCTTGTTGGGGTGTTAAGACGCGTAGGGGTTTGGGGGCCCAAGGACTCCACCTCCCG TGGGATCATGTGCCTGGTGTTGTGGGAGGCTGCAGGCGTCTGGCCGACACCCCTAATCCT TTAATCAAGTGTGTGATTTCCCCCCTCCCCAGCCCCAAGGGCCTTCCTTGGTTGGGTGAG ACCCCAGGGTGTGTCCCTGTGCTTCTTCAGCTCTGTTTCCACTGTAATCTCTGTATTATG CTTTGATGCAGCTGCAGACGTCGTGCCTAGCAATATTTCCAGTTGACCAAATATTCTAAT CTTTTTCATTTATATGCAAAAGAAATAGTTTTAAGTAACTTTTTATATAGCAAGATGATA AAAATTGTATGAGTGTAACCTAATTTTTCTCCTTGTGCTATGACCTTGTATACTGTACTT TTATTTTATTCCTTGGCAGTAAGTTGCAGGGCAGGTTCTAGTTTCCAGGGCAGACACAGC GGGGCCGGCAAGGCGCCGGGGCGCGAAGCCCAGGCTCTGTCTGAGACCTCCAGATGCCTT ACACCCAGCTGTCCTCTAGTGAGGACAGGCGCTCTTAAACTTTCAGGGTTTCTTTTTTTC CTGAAAATTTTGGACCAAAGTTTTGTTTCTGCTTCATGTCTGCCTCTATTGCTGGGACCC CAGGAGGTGGGGCAGCTGCCCTTCCGTCTTAGTGCCTCGTCCTGCATCCGGGTCCAGGGG GCTCCCTGTGCAGACCTTGTGCTGGTCAGCTCCCCCCTTTGGGGCCTGGACCTCCAATTT CCGTGTGGGGTGGAACAAGGGTGTAAATATTTATAATTTTTTATACCTGTTGTAAGACGT GAGAGGCAGCAGCAAATGCGGTTTTTTACGGTGACACAGATGTATATTTTGATAACAGCA ATTACAGGCCCAGTATTGTACGGAGCATGGCAGTCCACTGCCCACCGCCGGCTTGTAATG CAGAGAGAACTGAATTAAAGCAATTTTATAACAACTCCTACCTTTTCTGTAGGCTCTTTT TTCCTGTCCACATTGTAGAAGGTGGTTTGGCCAGTCTGTACCGGACTTTGAATAAACTCT CTGTACCCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 977-1958, - strand, RNAz p=0.94983 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 977-1958, - strand, RNAz p=0.94983 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 168-327, gnl|bosTau2|chr7 (10610337-10610178) | |
| 168-327, gnl|canFam2|chr20 (60952436-60952320) | |
| 168-327, gnl|danRer3|chrNA (92344217-92344115) | |
| 168-327, gnl|dasNov1|scaffold_69218 (5595-5482) | |
| 168-327, gnl|echTel1|scaffold_279523 (57704-57600) | |
| 168-327, gnl|galGal2|chr28 (2724849-2724962) | |
| 168-327, gnl|hg17|chr14 (64816624-64816739) | |
| 168-327, gnl|Hg17|chr19 (757398-757556) | |
| 168-327, gnl|loxAfr1|scaffold_14264 (33393-33487) | |
| 168-327, gnl|Mm7|chr10 (79640830-79640986) | |
| 168-327, gnl|mm7|chr13 (3023527-3023414) | |
| 168-327, gnl|monDom2|scaffold_155 (894197-894083) | |
| 168-327, gnl|panTro1|chr15 (64419984-64420099) | |
| 168-327, gnl|rheMac2|chr7 (128299563-128299679) | |
| 168-327, gnl|rn3|chr4 (107202412-107202522) | |
| 168-327, gnl|xenTro1|scaffold_36 (556633-556753) | |
| 454-672, gnl|bosTau2|chr7 (10608490-10608272) | |
| 454-672, gnl|canFam2|chr20 (60950483-60950264) | |
| 454-672, gnl|danRer3|chrNA (92337281-92337061) | |
| 454-672, gnl|dasNov1|scaffold_69218 (5325-5105) | |
| 454-672, gnl|echTel1|scaffold_279523 (57443-57226) | |
| 454-672, gnl|fr1|chrUn (290508139-290508359) | |
| 454-672, gnl|galGal2|chr28 (2728626-2728843) | |
| 454-672, gnl|hg17|chr14 (64817200-64817431) | |
| 454-672, gnl|Hg17|chr19 (759545-759763) | |
| 454-672, gnl|loxAfr1|scaffold_14264 (38525-38742) | |
| 454-672, gnl|Mm7|chr10 (79642669-79642887) | |
| 454-672, gnl|mm7|chr13 (3023261-3023059) | |
| 454-672, gnl|monDom2|scaffold_155 (890631-890414) | |
| 454-672, gnl|oryCun1|scaffold_173045 (42719-42938) | |
| 454-672, gnl|panTro1|chr15 (64420560-64420791) | |
| 454-672, gnl|rheMac2|chr7 (128300169-128300403) | |
| 454-672, gnl|rn3|chr4 (107202679-107202899) | |
| 454-672, gnl|tetNig1|chrUn_random (52079160-52078940) | |
| 454-672, gnl|xenTro1|scaffold_342 (1256248-1256031) | |
| 744-1213, gnl|bosTau2|chr7 (10607980-10607505) | |
| 744-1213, gnl|Hg17|chr19 (761687-762228) | |
| 744-1213, gnl|Mm7|chr10 (79643155-79643632) | |
| 1479-1732, gnl|bosTau2|chr23 (22551890-22552134) | |
| 1749-2125, gnl|bosTau2|chr23 (22552125-22552514) | |
| 1749-2125, gnl|Hg17|chr19 (762779-763128) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 168-327, gnl|bosTau2|chr7 (10610337-10610178) | |
| 168-327, gnl|canFam2|chr20 (60952436-60952320) | |
| 168-327, gnl|danRer3|chrNA (92344217-92344115) | |
| 168-327, gnl|dasNov1|scaffold_69218 (5595-5482) | |
| 168-327, gnl|echTel1|scaffold_279523 (57704-57600) | |
| 168-327, gnl|galGal2|chr28 (2724849-2724962) | |
| 168-327, gnl|hg17|chr14 (64816624-64816739) | |
| 168-327, gnl|Hg17|chr19 (757398-757556) | |
| 168-327, gnl|loxAfr1|scaffold_14264 (33393-33487) | |
| 168-327, gnl|Mm7|chr10 (79640830-79640986) | |
| 168-327, gnl|mm7|chr13 (3023527-3023414) | |
| 168-327, gnl|monDom2|scaffold_155 (894197-894083) | |
| 168-327, gnl|panTro1|chr15 (64419984-64420099) | |
| 168-327, gnl|rheMac2|chr7 (128299563-128299679) | |
| 168-327, gnl|rn3|chr4 (107202412-107202522) | |
| 168-327, gnl|xenTro1|scaffold_36 (556633-556753) | |
| 454-672, gnl|bosTau2|chr7 (10608490-10608272) | |
| 454-672, gnl|canFam2|chr20 (60950483-60950264) | |
| 454-672, gnl|danRer3|chrNA (92337281-92337061) | |
| 454-672, gnl|dasNov1|scaffold_69218 (5325-5105) | |
| 454-672, gnl|echTel1|scaffold_279523 (57443-57226) | |
| 454-672, gnl|fr1|chrUn (290508139-290508359) | |
| 454-672, gnl|galGal2|chr28 (2728626-2728843) | |
| 454-672, gnl|hg17|chr14 (64817200-64817431) | |
| 454-672, gnl|Hg17|chr19 (759545-759763) | |
| 454-672, gnl|loxAfr1|scaffold_14264 (38525-38742) | |
| 454-672, gnl|Mm7|chr10 (79642669-79642887) | |
| 454-672, gnl|mm7|chr13 (3023261-3023059) | |
| 454-672, gnl|monDom2|scaffold_155 (890631-890414) | |
| 454-672, gnl|oryCun1|scaffold_173045 (42719-42938) | |
| 454-672, gnl|panTro1|chr15 (64420560-64420791) | |
| 454-672, gnl|rheMac2|chr7 (128300169-128300403) | |
| 454-672, gnl|rn3|chr4 (107202679-107202899) | |
| 454-672, gnl|tetNig1|chrUn_random (52079160-52078940) | |
| 454-672, gnl|xenTro1|scaffold_342 (1256248-1256031) | |
| 744-1213, gnl|bosTau2|chr7 (10607980-10607505) | |
| 744-1213, gnl|Hg17|chr19 (761687-762228) | |
| 744-1213, gnl|Mm7|chr10 (79643155-79643632) | |
| 1479-1732, gnl|bosTau2|chr23 (22551890-22552134) | |
| 1749-2125, gnl|bosTau2|chr23 (22552125-22552514) | |
| 1749-2125, gnl|Hg17|chr19 (762779-763128) |
| Expressed library(ies): 50 entry(ies) | More info |
| Expressed library(ies): 50 entry(ies) | Help | Less info |
| fty (1.05504) | |
| duo (0.864006) | |
| cag (0.604778) | |
| cte (0.58548) | |
| cmu (0.55918) | |
| cga (0.558191) | |
| fce (0.543183) | |
| jca (0.45584) | |
| pty (0.428143) | |
| amn (0.417711) | |
| thg (0.380373) | |
| eep (0.367692) | |
| ill (0.351185) | |
| sin (0.349895) | |
| med (0.348756) | |
| eye (0.341006) | |
| cut (0.339847) | |
| nje (0.33184) | |
| cki (0.330469) | |
| csp (0.322373) | |
| spl (0.286369) | |
| hyp (0.285673) | |
| lnt (0.284616) | |
| cst (0.280073) | |
| hlv (0.278513) | |
| nmm (0.265604) | |
| cov (0.264306) | |
| ese (0.253004) | |
| cly (0.241284) | |
| mgp (0.230681) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| eli (0.151814) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lin (0.145603) | |
| csk (0.140746) | |
| che (0.136314) | |
| pla (0.133672) | |
| bla (0.124347) | |
| eru (0.120048) | |
| clu (0.119646) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 50 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (1.05504) | |
| duo (0.864006) | |
| cag (0.604778) | |
| cte (0.58548) | |
| cmu (0.55918) | |
| cga (0.558191) | |
| fce (0.543183) | |
| jca (0.45584) | |
| pty (0.428143) | |
| amn (0.417711) | |
| thg (0.380373) | |
| eep (0.367692) | |
| ill (0.351185) | |
| sin (0.349895) | |
| med (0.348756) | |
| eye (0.341006) | |
| cut (0.339847) | |
| nje (0.33184) | |
| cki (0.330469) | |
| csp (0.322373) | |
| spl (0.286369) | |
| hyp (0.285673) | |
| lnt (0.284616) | |
| cst (0.280073) | |
| hlv (0.278513) | |
| nmm (0.265604) | |
| cov (0.264306) | |
| ese (0.253004) | |
| cly (0.241284) | |
| mgp (0.230681) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| eli (0.151814) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lin (0.145603) | |
| csk (0.140746) | |
| che (0.136314) | |
| pla (0.133672) | |
| bla (0.124347) | |
| eru (0.120048) | |
| clu (0.119646) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| eje (0.0988338) |