Non-Coding RNA Search

Ss1.1-Pig4-TMW8063I19.3

Sequence:


               
               GGCGGCTTCCCTGTCTGGCTACCAGCGCACCTGCAGGCCTGGACTCCACACTGTCTGACC
TCTCCAGACCCACATTTCTTCAATCACGCTTTACATCCTGTTTGAGTATTTATTTAAGCC
TTTCTTTGCTTCTAGGTCTTTTTGTACGTAAAGCAGTTGAAATAAGAACCTCAAAACTGA
TGTTAAAGTGCTTTTAGAGACCACTCTGTTTTCTATGTATATGTAAAGTTAAGGATAAGT
TCTTAAGTTTACAGTTAAAAATTCAGTACTTGGTATTTAATATTCCACTCTAGCTTTATG
GAAGCCAACCCATGTGTACATGCATGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCATGCA
CGCGCGCAAGTGAGCTTTGAACCTCCCCTTGGCTGCAGCACCTTTCAGTTACATAAAGCT
GTCATACATACCTTCCTGTGAGTCCAAATTCAGTGCCTCACAGTTGCTGACTCAATCATA
AGAATTTAAGACAGGCAGCAAGCAAGCCCCCAGGGAGACATTACACCTAGTGTCAAATAG
CAAGTGTTTAGAAGAAACATAAATTAAAACTCCAAACCCTTAGCATACATGGATGCAAAG
GAGTAGCAGAAAGATTCCTGCTCACCGGTAAAGTGTTGAAAGCTGTTAGACTGCTCCTCT
GCACCTCTCACTTCCTCCCTCAGGACCTACAAGCCTGGGGGCGCTGGTCAGGAGGTGCTG
GGGTCTTTGCTGGCCATAGCTGCTTCCCCTGTTGGATCCCCACAGTTGCCCGCAGGTGAG
GCAAGGTCCTCTCCCTGGGGTAAGCACTCCCCGTCCCACTTACTGGGAACACAGACAGGG
AAACCAGAAAGGGCTGCCTGGCACAGTGGGTAAATATATTGGTTGTATTGTTTTCTTTTC
CTTTAAGGGTTTTTAGTAAGTATGTTTGGCATACTGTCTTTTAATGAGTTTGTAATATCT
TCTGTTTTTAGCAGCCTATATCTTCAGCTGGTGCTTTTAATCAGGAAAAAAAATTGTAAA
TACAAAACATTGTTTAAAAGATATAACCATAGAACATAGTTTCTTGTTTGTAGATTTCCT
TTCCTATATATTCAAAGTAAAATAACTTGCAGGAGCCATCACTCACTGTGTCTTTGTTGT
GGCCTTTGCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGCTTCCCTGTCTGGCTACCAGCGCACCTGCAGGCCTGGACTCCACACTGTCTGACC
TCTCCAGACCCACATTTCTTCAATCACGCTTTACATCCTGTTTGAGTATTTATTTAAGCC
TTTCTTTGCTTCTAGGTCTTTTTGTACGTAAAGCAGTTGAAATAAGAACCTCAAAACTGA
TGTTAAAGTGCTTTTAGAGACCACTCTGTTTTCTATGTATATGTAAAGTTAAGGATAAGT
TCTTAAGTTTACAGTTAAAAATTCAGTACTTGGTATTTAATATTCCACTCTAGCTTTATG
GAAGCCAACCCATGTGTACATGCATGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCATGCA
CGCGCGCAAGTGAGCTTTGAACCTCCCCTTGGCTGCAGCACCTTTCAGTTACATAAAGCT
GTCATACATACCTTCCTGTGAGTCCAAATTCAGTGCCTCACAGTTGCTGACTCAATCATA
AGAATTTAAGACAGGCAGCAAGCAAGCCCCCAGGGAGACATTACACCTAGTGTCAAATAG
CAAGTGTTTAGAAGAAACATAAATTAAAACTCCAAACCCTTAGCATACATGGATGCAAAG
GAGTAGCAGAAAGATTCCTGCTCACCGGTAAAGTGTTGAAAGCTGTTAGACTGCTCCTCT
GCACCTCTCACTTCCTCCCTCAGGACCTACAAGCCTGGGGGCGCTGGTCAGGAGGTGCTG
GGGTCTTTGCTGGCCATAGCTGCTTCCCCTGTTGGATCCCCACAGTTGCCCGCAGGTGAG
GCAAGGTCCTCTCCCTGGGGTAAGCACTCCCCGTCCCACTTACTGGGAACACAGACAGGG
AAACCAGAAAGGGCTGCCTGGCACAGTGGGTAAATATATTGGTTGTATTGTTTTCTTTTC
CTTTAAGGGTTTTTAGTAAGTATGTTTGGCATACTGTCTTTTAATGAGTTTGTAATATCT
TCTGTTTTTAGCAGCCTATATCTTCAGCTGGTGCTTTTAATCAGGAAAAAAAATTGTAAA
TACAAAACATTGTTTAAAAGATATAACCATAGAACATAGTTTCTTGTTTGTAGATTTCCT
TTCCTATATATTCAAAGTAAAATAACTTGCAGGAGCCATCACTCACTGTGTCTTTGTTGT
GGCCTTTGCCCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               732-848, - strand, RNAz p=0.9394

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               732-848, - strand, RNAz p=0.9394

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               10-326, gnl|bosTau2|chr7 (4070772-4070443)
               

               
               10-326, gnl|Hg17|chr19 (19329284-19329625)
               


               
               353-1141, gnl|bosTau2|chr7 (4070458-4069666)
               

               
               353-1141, gnl|Hg17|chr19 (19329610-19330583)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-326, gnl|bosTau2|chr7 (4070772-4070443)
               

               
               10-326, gnl|Hg17|chr19 (19329284-19329625)
               


               
               353-1141, gnl|bosTau2|chr7 (4070458-4069666)
               

               
               353-1141, gnl|Hg17|chr19 (19329610-19330583)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               ebs (0.354904)
               

               
               fty (0.351679)
               

               
               csp (0.322373)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               eru (0.120048)
               

               
               med (0.116252)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.354904)
               

               
               fty (0.351679)
               

               
               csp (0.322373)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               eru (0.120048)
               

               
               med (0.116252)

	10-326, gnl\|bosTau2\|chr7 (4070772-4070443)
	10-326, gnl\|Hg17\|chr19 (19329284-19329625)

	353-1141, gnl\|bosTau2\|chr7 (4070458-4069666)
	353-1141, gnl\|Hg17\|chr19 (19329610-19330583)

	ebs (0.354904)
	fty (0.351679)
	csp (0.322373)
	nlu (0.191681)
	cmu (0.186393)
	sto (0.179824)
	ill (0.175593)
	fbs (0.175346)
	cut (0.169924)
	cki (0.165235)
	cje (0.165235)
	spl (0.143184)
	pty (0.142714)
	che (0.136314)
	eru (0.120048)
	med (0.116252)