Non-Coding RNA Search

Ss1.1-Pig4-TMW8063J05.5

Sequence:


               
               GGCGGGCCAGTGTGGGGACTGGCGGGACTACAGGGACGGGCGTTTATACTGAGTGAGGCT
GGAGGGTTGAGCAGAGGCGGGATGTGCTCTGACTAACCTTATTTGTACCAGAGCCACCGT
GGCTGCTGTATTGAGAATAGTCTGTGGGGGGTGAGGGCTGACACAGGGGCCCGTTTAACG
GTTGGAATATTCTGAGCCACATGGAAGTTGTGAGTGGCTGGATTTGGGGTTTGCTAGTGA
GTTGGAATGAGGAATGCGTGAGAGAGGAATAGCCACGATTATTTTAAGGTTCATGACTCC
TGCGGGCTTTTGAAATGTAGACCTTTGGTCTCATAAAAGTAATATTTCGTCTATTCAATG
AATTCCTTGCTAAAGAATAGCCATAGAAATACTTTATGTAATGTTTTCACAAACCATAAC
TCTTCTTTTTTAAAGCTCTTCACAGAATATGGTCGTCTAGCGATGGATGAAATTTTCCAA
AAGCCCTTCCAGACACTGATGTTTTTGGTTCGAGACTGGAGTTTCCCTTATGAATACAAC
TATGGACTACAAGGAGGAATGTCATTTTTGGAGAAGCGTCTACAGGTAAGTAGACATATA
ATCTTCTGGAATCACCACAGTGGTGCAGTGAGTTAAGGATCTGGCATTAGTGTCACCTGT
TTCCTCCTCCCACATCCAGGACTCCGGGTGGCCACAAGCCCTGACTTTGATGGCAAATTG
GCTGTGGCTTGGATTCAGTCCCTGACCTGGGAACTTCCATAAGATATGTGTTTAGCCAAA
TGACCAGAAAATATCGAGTATGAATAGGAAATGCTAAAGAGAACGAGTGTGTTCTCTTAG
AAAGAATTTAGAGTCTTGTTCAGTTTTTGCTCCTGCCTTACTGTGACCATCAGAATTAGT
TTACTTTAGTTTCTCCCTTTGATGTGGTTGTGGTAATACCCATTAATGATCTTTCCAAGA
GAATCGTGACAATTAATTGGTTTATGAGAGATAAAGGGGCTAAATAAAGGAGGACTTAAC
ATTCGTCATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGGCCAGTGTGGGGACTGGCGGGACTACAGGGACGGGCGTTTATACTGAGTGAGGCT
GGAGGGTTGAGCAGAGGCGGGATGTGCTCTGACTAACCTTATTTGTACCAGAGCCACCGT
GGCTGCTGTATTGAGAATAGTCTGTGGGGGGTGAGGGCTGACACAGGGGCCCGTTTAACG
GTTGGAATATTCTGAGCCACATGGAAGTTGTGAGTGGCTGGATTTGGGGTTTGCTAGTGA
GTTGGAATGAGGAATGCGTGAGAGAGGAATAGCCACGATTATTTTAAGGTTCATGACTCC
TGCGGGCTTTTGAAATGTAGACCTTTGGTCTCATAAAAGTAATATTTCGTCTATTCAATG
AATTCCTTGCTAAAGAATAGCCATAGAAATACTTTATGTAATGTTTTCACAAACCATAAC
TCTTCTTTTTTAAAGCTCTTCACAGAATATGGTCGTCTAGCGATGGATGAAATTTTCCAA
AAGCCCTTCCAGACACTGATGTTTTTGGTTCGAGACTGGAGTTTCCCTTATGAATACAAC
TATGGACTACAAGGAGGAATGTCATTTTTGGAGAAGCGTCTACAGGTAAGTAGACATATA
ATCTTCTGGAATCACCACAGTGGTGCAGTGAGTTAAGGATCTGGCATTAGTGTCACCTGT
TTCCTCCTCCCACATCCAGGACTCCGGGTGGCCACAAGCCCTGACTTTGATGGCAAATTG
GCTGTGGCTTGGATTCAGTCCCTGACCTGGGAACTTCCATAAGATATGTGTTTAGCCAAA
TGACCAGAAAATATCGAGTATGAATAGGAAATGCTAAAGAGAACGAGTGTGTTCTCTTAG
AAAGAATTTAGAGTCTTGTTCAGTTTTTGCTCCTGCCTTACTGTGACCATCAGAATTAGT
TTACTTTAGTTTCTCCCTTTGATGTGGTTGTGGTAATACCCATTAATGATCTTTCCAAGA
GAATCGTGACAATTAATTGGTTTATGAGAGATAAAGGGGCTAAATAAAGGAGGACTTAAC
ATTCGTCATTTT

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               1-492, gnl|bosTau2|chr29 (35044216-35044689)
               

               
               1-492, gnl|Hg17|chr11 (63171028-63170555)
               


               
               649-1028, gnl|bosTau2|chr29 (35046625-35047011)
               

               
               649-1028, gnl|Hg17|chr11 (63167480-63167104)
               

               
               649-1028, gnl|Mm7|chr19 (7341992-7342509)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-492, gnl|bosTau2|chr29 (35044216-35044689)
               

               
               1-492, gnl|Hg17|chr11 (63171028-63170555)
               


               
               649-1028, gnl|bosTau2|chr29 (35046625-35047011)
               

               
               649-1028, gnl|Hg17|chr11 (63167480-63167104)
               

               
               649-1028, gnl|Mm7|chr19 (7341992-7342509)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               kid (0.129735)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.129735)

	1-492, gnl\|bosTau2\|chr29 (35044216-35044689)
	1-492, gnl\|Hg17\|chr11 (63171028-63170555)

	649-1028, gnl\|bosTau2\|chr29 (35046625-35047011)
	649-1028, gnl\|Hg17\|chr11 (63167480-63167104)
	649-1028, gnl\|Mm7\|chr19 (7341992-7342509)