Non-Coding RNA Search

Ss1.1-Pig4-TMW8063J06.5

Sequence:


               
               CTCCAGGAGAGGCCTGGAGACACCCCCCTGGCCCACATCCAGCACCTCTTTTCCTTCAGA
GCTTTGGGATCTGGCCACTTCCCCCAGCCCGAGAAAGAGCGTTTCCAGGAGCGCCTGGCT
CTGATCCCTGGTGGGGTGACTGTGTGTGTGTTGGCCCTGGCCACCCTCCAGCCTGGAACC
GTGGGCAACACCCTCCTGCTGACCCGGCTGGAAAAAGACAATCCTCCGGTCACCATGCAG
ATCCCCACGGCCCAGAACAAGCTTTCTCTGAGTTCAGCCCTGAAGGAATTTGATGCCATC
CAGAAAGAACAGAAAGAGAACAGCAGCTGTACCGACAAGCGAGAATGGTGGACAGGGCGG
CTGGAACTGGACCATAGGATGGAGGTTCTCACCACTTCCCTAGAGAAGCACGTGTTAGGC
TGCTGGAGGGGACTGCTGCTGCCATCCAGTGAGGACCCCGGCCCTTCCCAGGAGGCCTCC
CGTCTACAAGAGTTGCTGCAAGAATGTGGCTGGAAATACCCTGACCCCACTCTGCTGAAA
ATCATCCTCAGCAGTGCCAGTACGCTCACCCCACAGGACATTCAGGCCCTGGCCTATGGG
CTGTGCCCGGCCCAGCCAGAACGAGCCCAGGAGCTCCTGAGTGAGGCAGTAGGGCGCCTA
CAGCACCAGACAGTAGCAAGCAGCAGGCACCTTGTCCTAGTGCTGGACAAAGACCTGCAG
AAGCTGCCGTGGGAGAGCATGCCCAGCCTCCGCGCCCTGCCCGTCACTCGGCTGCCCTCC
TTCCGATTCCTCCTCAGCTACTCCATCATCAAAGAGTGTGGGGCCTCGTCAGTGCTGAAC
CAAGGGGTGAATCCTCGCAGTACCTTCTACGTCCTGAACCCTCACAATAACCTGTCAAGC
ACAGAGGAGCAGTTCCGAGCCCATTTTAGCAGTGAAGCTGGCTGGAAAGGGGTGGTCGGG
GAGGTGCCGAGCCCGGAACAGGTGCAGGCAGCCCTGACGGAGCATGACTTATACATCTAC
GCAGGGCATGGGGCTGGTGCCCGCTTCCTGGATGGCCAGGCTGTCCTGCGGCTGAGCTGC
AGGGCCGTGGCCCTGCTCTTTGGCTGCAGCAGTGCAGCCCTGGCTGTGCATGGAAACCTG
GAGGGGGCTGGCATCGTGCTCAAGTATATCATGGCTGGCTGCCCCCTGTTTCTAGGTAAC
CTCTGGGATGTAACTGACCGTGACATTGACCGCTACACGGAGGCTCTGCTGCAGGGCTGG
CTTGGGGCAGGTTCAGGAGCCCCCCTTCTGTACTACGTCAACCAGGCCCGCCAGGCTCCC
CGACTCAAGTATCTCATTGGGGCTGCACCGGTAGCCTATGGCTTGCCTGTCTCCCTGCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCAGGAGAGGCCTGGAGACACCCCCCTGGCCCACATCCAGCACCTCTTTTCCTTCAGA
GCTTTGGGATCTGGCCACTTCCCCCAGCCCGAGAAAGAGCGTTTCCAGGAGCGCCTGGCT
CTGATCCCTGGTGGGGTGACTGTGTGTGTGTTGGCCCTGGCCACCCTCCAGCCTGGAACC
GTGGGCAACACCCTCCTGCTGACCCGGCTGGAAAAAGACAATCCTCCGGTCACCATGCAG
ATCCCCACGGCCCAGAACAAGCTTTCTCTGAGTTCAGCCCTGAAGGAATTTGATGCCATC
CAGAAAGAACAGAAAGAGAACAGCAGCTGTACCGACAAGCGAGAATGGTGGACAGGGCGG
CTGGAACTGGACCATAGGATGGAGGTTCTCACCACTTCCCTAGAGAAGCACGTGTTAGGC
TGCTGGAGGGGACTGCTGCTGCCATCCAGTGAGGACCCCGGCCCTTCCCAGGAGGCCTCC
CGTCTACAAGAGTTGCTGCAAGAATGTGGCTGGAAATACCCTGACCCCACTCTGCTGAAA
ATCATCCTCAGCAGTGCCAGTACGCTCACCCCACAGGACATTCAGGCCCTGGCCTATGGG
CTGTGCCCGGCCCAGCCAGAACGAGCCCAGGAGCTCCTGAGTGAGGCAGTAGGGCGCCTA
CAGCACCAGACAGTAGCAAGCAGCAGGCACCTTGTCCTAGTGCTGGACAAAGACCTGCAG
AAGCTGCCGTGGGAGAGCATGCCCAGCCTCCGCGCCCTGCCCGTCACTCGGCTGCCCTCC
TTCCGATTCCTCCTCAGCTACTCCATCATCAAAGAGTGTGGGGCCTCGTCAGTGCTGAAC
CAAGGGGTGAATCCTCGCAGTACCTTCTACGTCCTGAACCCTCACAATAACCTGTCAAGC
ACAGAGGAGCAGTTCCGAGCCCATTTTAGCAGTGAAGCTGGCTGGAAAGGGGTGGTCGGG
GAGGTGCCGAGCCCGGAACAGGTGCAGGCAGCCCTGACGGAGCATGACTTATACATCTAC
GCAGGGCATGGGGCTGGTGCCCGCTTCCTGGATGGCCAGGCTGTCCTGCGGCTGAGCTGC
AGGGCCGTGGCCCTGCTCTTTGGCTGCAGCAGTGCAGCCCTGGCTGTGCATGGAAACCTG
GAGGGGGCTGGCATCGTGCTCAAGTATATCATGGCTGGCTGCCCCCTGTTTCTAGGTAAC
CTCTGGGATGTAACTGACCGTGACATTGACCGCTACACGGAGGCTCTGCTGCAGGGCTGG
CTTGGGGCAGGTTCAGGAGCCCCCCTTCTGTACTACGTCAACCAGGCCCGCCAGGCTCCC
CGACTCAAGTATCTCATTGGGGCTGCACCGGTAGCCTATGGCTTGCCTGTCTCCCTGCGA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1181-1379, gnl|bosTau2|chr5 (19142278-19142080)
               

               
               1181-1379, gnl|Hg17|chr12 (51973323-51973521)
               

               
               1181-1379, gnl|Mm7|chr15 (102310164-102310362)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1181-1379, gnl|bosTau2|chr5 (19142278-19142080)
               

               
               1181-1379, gnl|Hg17|chr12 (51973323-51973521)
               

               
               1181-1379, gnl|Mm7|chr15 (102310164-102310362)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               fty (0.17584)
               

               
               eli (0.151814)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               eli (0.151814)

	1181-1379, gnl\|bosTau2\|chr5 (19142278-19142080)
	1181-1379, gnl\|Hg17\|chr12 (51973323-51973521)
	1181-1379, gnl\|Mm7\|chr15 (102310164-102310362)