Ss1.1-Pig4-TMW8063J09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCAAAAATAAAGAGTTGTATGAAATCAATCCTCCAGAGATATCCGAAGAGATTATAGGA TCACCCATTCCAGAACCTAGACAACGCTCAAGACTTTTGAGATCTCAATCAGAAAGCTCT GATGAAGTTACAGAATTGGACCTTTCACATGGAAAAAAAGATGCATTTGTTTTGGAGATT GATGACACAGATGCTATGGAAGATGTACATTCTCTGCTCACTGATGTTCCACCTCCTTCA GGCTTTTATAGTTGTAATACAGAAATTATGCCTGGTATAAACAATTGGACATCTGAAATA CAGATGTTCACATCAGTAAGAGTAATCCGATTAAGCAGCCTTAACCTGACTAATCAAGCC CTCAATAAGAACTTTAATGATCTCTGTGAAAATTTGCTTAAGAGCCTGTATTTTAAACTA CGGTCTATGATTCCTTGCTGCCTTTGCCATGTAAATTTTACAGTATCTCTCCCTGAAGAT GAATTAATTCAGGTTACAGTCACAGCAGTTGCAATAACTTTTGACAAAAATCAGGCTTTA CAGACCACAAAAACACATGCTGAGAAGTCATTGCAAAGAGCCTCTACAGATAATGAAGAA CTTCTGCAGTTTCCCTTGGAACTATGTTCAGATTCACTTCCTTCTCATCCTTTTCCACCA ACAAAAGAACACCTGGAGAGTGCAAGTGCTAACTCAGGTATACCAGCTGCACAGAGAGCA ACGTCAGTTGATTACAGTTCCTTTGCAGACAGATGCAGCAGCTGGATAGAGCTCATTAAA CTGAAAGCTCAGACCATAAGGCGCGGATCAATTAAGACAACTGTGACAGTCGAAAAAGCA AGTCCAATGGGTGAAGGAACTTTCCGGAATCGTTCAGCCCCACCTTGTACAAATTCTACA GTTGGGGTTGTCAAAATGACACCTCTTTCTTTCATTCCTGGAGCAAAAATAACAAAATAT CTTGGGATAATTAACATGTTTTTCATTCGGGAAACCACTTCTCTTCGTGAGGAAGGAGGG GTCAGTGGTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCAAAAATAAAGAGTTGTATGAAATCAATCCTCCAGAGATATCCGAAGAGATTATAGGA TCACCCATTCCAGAACCTAGACAACGCTCAAGACTTTTGAGATCTCAATCAGAAAGCTCT GATGAAGTTACAGAATTGGACCTTTCACATGGAAAAAAAGATGCATTTGTTTTGGAGATT GATGACACAGATGCTATGGAAGATGTACATTCTCTGCTCACTGATGTTCCACCTCCTTCA GGCTTTTATAGTTGTAATACAGAAATTATGCCTGGTATAAACAATTGGACATCTGAAATA CAGATGTTCACATCAGTAAGAGTAATCCGATTAAGCAGCCTTAACCTGACTAATCAAGCC CTCAATAAGAACTTTAATGATCTCTGTGAAAATTTGCTTAAGAGCCTGTATTTTAAACTA CGGTCTATGATTCCTTGCTGCCTTTGCCATGTAAATTTTACAGTATCTCTCCCTGAAGAT GAATTAATTCAGGTTACAGTCACAGCAGTTGCAATAACTTTTGACAAAAATCAGGCTTTA CAGACCACAAAAACACATGCTGAGAAGTCATTGCAAAGAGCCTCTACAGATAATGAAGAA CTTCTGCAGTTTCCCTTGGAACTATGTTCAGATTCACTTCCTTCTCATCCTTTTCCACCA ACAAAAGAACACCTGGAGAGTGCAAGTGCTAACTCAGGTATACCAGCTGCACAGAGAGCA ACGTCAGTTGATTACAGTTCCTTTGCAGACAGATGCAGCAGCTGGATAGAGCTCATTAAA CTGAAAGCTCAGACCATAAGGCGCGGATCAATTAAGACAACTGTGACAGTCGAAAAAGCA AGTCCAATGGGTGAAGGAACTTTCCGGAATCGTTCAGCCCCACCTTGTACAAATTCTACA GTTGGGGTTGTCAAAATGACACCTCTTTCTTTCATTCCTGGAGCAAAAATAACAAAATAT CTTGGGATAATTAACATGTTTTTCATTCGGGAAACCACTTCTCTTCGTGAGGAAGGAGGG GTCAGTGGTTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 302-402, - strand, RNAz p=0.881442 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 302-402, - strand, RNAz p=0.881442 |
| Aligned organism(s): 70 entry(ies) | More info |
| Aligned organism(s): 70 entry(ies) | Help | Less info |
| 37-177, gnl|bosTau2|chr5 (50379755-50379895) | |
| 37-177, gnl|canFam2|chr27 (27790730-27790621) | |
| 37-177, gnl|danRer3|chr19 (18474762-18474654) | |
| 37-177, gnl|echTel1|scaffold_324985 (86654-86763) | |
| 37-177, gnl|fr1|chrUn (21618583-21618689) | |
| 37-177, gnl|galGal2|chr1 (63156576-63156467) | |
| 37-177, gnl|hg17|chr12 (22518948-22519057) | |
| 37-177, gnl|Hg17|chr12 (22519092-22518952) | |
| 37-177, gnl|loxAfr1|scaffold_71736 (5250-5359) | |
| 37-177, gnl|mm7|chr6 (143126478-143126587) | |
| 37-177, gnl|Mm7|chr6 (143126622-143126482) | |
| 37-177, gnl|monDom2|scaffold_31 (3592005-3591896) | |
| 37-177, gnl|panTro1|chrUn_random (48897215-48897324) | |
| 37-177, gnl|rheMac2|chr11 (22785469-22785578) | |
| 37-177, gnl|rn3|chr4 (181169580-181169689) | |
| 37-177, gnl|tetNig1|chr13 (3258695-3258589) | |
| 302-402, gnl|bosTau2|chr5 (50382526-50382626) | |
| 302-402, gnl|canFam2|chr27 (27793928-27793848) | |
| 302-402, gnl|danRer3|chr19 (18475582-18475500) | |
| 302-402, gnl|dasNov1|scaffold_2497 (10508-10591) | |
| 302-402, gnl|echTel1|scaffold_319586 (12886-12966) | |
| 302-402, gnl|fr1|chrUn (21617919-21618002) | |
| 302-402, gnl|galGal2|chr1 (63163307-63163227) | |
| 302-402, gnl|hg17|chr12 (22516155-22516235) | |
| 302-402, gnl|Hg17|chr12 (22516268-22516168) | |
| 302-402, gnl|mm7|chr6 (143122225-143122305) | |
| 302-402, gnl|Mm7|chr6 (143122338-143122238) | |
| 302-402, gnl|monDom2|scaffold_31 (3608488-3608402) | |
| 302-402, gnl|oryCun1|scaffold_48530 (867-947) | |
| 302-402, gnl|panTro1|chrUn_random (48894413-48894492) | |
| 302-402, gnl|rheMac2|chr11 (22782680-22782760) | |
| 302-402, gnl|rn3|chr4 (181165590-181165670) | |
| 302-402, gnl|tetNig1|chr13 (3259344-3259275) | |
| 302-402, gnl|xenTro1|scaffold_2009 (59015-58938) | |
| 717-820, gnl|bosTau2|chr5 (50397280-50397383) | |
| 717-820, gnl|canFam2|chr27 (27806082-27805960) | |
| 717-820, gnl|danRer3|chr19 (18479895-18479786) | |
| 717-820, gnl|dasNov1|scaffold_75793 (8599-8721) | |
| 717-820, gnl|echTel1|scaffold_270854 (16730-16852) | |
| 717-820, gnl|fr1|chrUn (21616497-21616616) | |
| 717-820, gnl|galGal2|chr1 (63170881-63170769) | |
| 717-820, gnl|hg17|chr12 (22502679-22502801) | |
| 717-820, gnl|Hg17|chr12 (22502788-22502685) | |
| 717-820, gnl|loxAfr1|scaffold_49164 (19994-19872) | |
| 717-820, gnl|mm7|chr6 (143110782-143110904) | |
| 717-820, gnl|Mm7|chr6 (143110891-143110788) | |
| 717-820, gnl|monDom2|scaffold_31 (3636016-3635894) | |
| 717-820, gnl|oryCun1|scaffold_204041 (31276-31398) | |
| 717-820, gnl|panTro1|chrUn_random (48880888-48881010) | |
| 717-820, gnl|rheMac2|chr11 (22769019-22769141) | |
| 717-820, gnl|rn3|chr4 (181154846-181154968) | |
| 717-820, gnl|tetNig1|chr13 (3260881-3260762) | |
| 823-1012, gnl|bosTau2|chr5 (50398702-50398891) | |
| 823-1012, gnl|canFam2|chr27 (27807592-27807413) | |
| 823-1012, gnl|danRer3|chr19 (18489994-18489812) | |
| 823-1012, gnl|dasNov1|scaffold_75793 (7077-7256) | |
| 823-1012, gnl|echTel1|scaffold_270854 (15205-15382) | |
| 823-1012, gnl|fr1|chrUn (21615382-21615561) | |
| 823-1012, gnl|galGal2|chr1 (63171912-63171733) | |
| 823-1012, gnl|hg17|chr12 (22501166-22501345) | |
| 823-1012, gnl|Hg17|chr12 (22501360-22501171) | |
| 823-1012, gnl|mm7|chr6 (143109337-143109516) | |
| 823-1012, gnl|Mm7|chr6 (143109531-143109342) | |
| 823-1012, gnl|monDom2|scaffold_31 (3637230-3637051) | |
| 823-1012, gnl|oryCun1|scaffold_69185 (741-562) | |
| 823-1012, gnl|panTro1|chrUn_random (48879375-48879554) | |
| 823-1012, gnl|rheMac2|chr11 (22767486-22767665) | |
| 823-1012, gnl|rn3|chr4 (181153457-181153636) | |
| 823-1012, gnl|tetNig1|chr13 (3262048-3261871) | |
| 823-1012, gnl|xenTro1|scaffold_26385 (2531-2705) |
| Aligned organism(s): 70 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 37-177, gnl|bosTau2|chr5 (50379755-50379895) | |
| 37-177, gnl|canFam2|chr27 (27790730-27790621) | |
| 37-177, gnl|danRer3|chr19 (18474762-18474654) | |
| 37-177, gnl|echTel1|scaffold_324985 (86654-86763) | |
| 37-177, gnl|fr1|chrUn (21618583-21618689) | |
| 37-177, gnl|galGal2|chr1 (63156576-63156467) | |
| 37-177, gnl|hg17|chr12 (22518948-22519057) | |
| 37-177, gnl|Hg17|chr12 (22519092-22518952) | |
| 37-177, gnl|loxAfr1|scaffold_71736 (5250-5359) | |
| 37-177, gnl|mm7|chr6 (143126478-143126587) | |
| 37-177, gnl|Mm7|chr6 (143126622-143126482) | |
| 37-177, gnl|monDom2|scaffold_31 (3592005-3591896) | |
| 37-177, gnl|panTro1|chrUn_random (48897215-48897324) | |
| 37-177, gnl|rheMac2|chr11 (22785469-22785578) | |
| 37-177, gnl|rn3|chr4 (181169580-181169689) | |
| 37-177, gnl|tetNig1|chr13 (3258695-3258589) | |
| 302-402, gnl|bosTau2|chr5 (50382526-50382626) | |
| 302-402, gnl|canFam2|chr27 (27793928-27793848) | |
| 302-402, gnl|danRer3|chr19 (18475582-18475500) | |
| 302-402, gnl|dasNov1|scaffold_2497 (10508-10591) | |
| 302-402, gnl|echTel1|scaffold_319586 (12886-12966) | |
| 302-402, gnl|fr1|chrUn (21617919-21618002) | |
| 302-402, gnl|galGal2|chr1 (63163307-63163227) | |
| 302-402, gnl|hg17|chr12 (22516155-22516235) | |
| 302-402, gnl|Hg17|chr12 (22516268-22516168) | |
| 302-402, gnl|mm7|chr6 (143122225-143122305) | |
| 302-402, gnl|Mm7|chr6 (143122338-143122238) | |
| 302-402, gnl|monDom2|scaffold_31 (3608488-3608402) | |
| 302-402, gnl|oryCun1|scaffold_48530 (867-947) | |
| 302-402, gnl|panTro1|chrUn_random (48894413-48894492) | |
| 302-402, gnl|rheMac2|chr11 (22782680-22782760) | |
| 302-402, gnl|rn3|chr4 (181165590-181165670) | |
| 302-402, gnl|tetNig1|chr13 (3259344-3259275) | |
| 302-402, gnl|xenTro1|scaffold_2009 (59015-58938) | |
| 717-820, gnl|bosTau2|chr5 (50397280-50397383) | |
| 717-820, gnl|canFam2|chr27 (27806082-27805960) | |
| 717-820, gnl|danRer3|chr19 (18479895-18479786) | |
| 717-820, gnl|dasNov1|scaffold_75793 (8599-8721) | |
| 717-820, gnl|echTel1|scaffold_270854 (16730-16852) | |
| 717-820, gnl|fr1|chrUn (21616497-21616616) | |
| 717-820, gnl|galGal2|chr1 (63170881-63170769) | |
| 717-820, gnl|hg17|chr12 (22502679-22502801) | |
| 717-820, gnl|Hg17|chr12 (22502788-22502685) | |
| 717-820, gnl|loxAfr1|scaffold_49164 (19994-19872) | |
| 717-820, gnl|mm7|chr6 (143110782-143110904) | |
| 717-820, gnl|Mm7|chr6 (143110891-143110788) | |
| 717-820, gnl|monDom2|scaffold_31 (3636016-3635894) | |
| 717-820, gnl|oryCun1|scaffold_204041 (31276-31398) | |
| 717-820, gnl|panTro1|chrUn_random (48880888-48881010) | |
| 717-820, gnl|rheMac2|chr11 (22769019-22769141) | |
| 717-820, gnl|rn3|chr4 (181154846-181154968) | |
| 717-820, gnl|tetNig1|chr13 (3260881-3260762) | |
| 823-1012, gnl|bosTau2|chr5 (50398702-50398891) | |
| 823-1012, gnl|canFam2|chr27 (27807592-27807413) | |
| 823-1012, gnl|danRer3|chr19 (18489994-18489812) | |
| 823-1012, gnl|dasNov1|scaffold_75793 (7077-7256) | |
| 823-1012, gnl|echTel1|scaffold_270854 (15205-15382) | |
| 823-1012, gnl|fr1|chrUn (21615382-21615561) | |
| 823-1012, gnl|galGal2|chr1 (63171912-63171733) | |
| 823-1012, gnl|hg17|chr12 (22501166-22501345) | |
| 823-1012, gnl|Hg17|chr12 (22501360-22501171) | |
| 823-1012, gnl|mm7|chr6 (143109337-143109516) | |
| 823-1012, gnl|Mm7|chr6 (143109531-143109342) | |
| 823-1012, gnl|monDom2|scaffold_31 (3637230-3637051) | |
| 823-1012, gnl|oryCun1|scaffold_69185 (741-562) | |
| 823-1012, gnl|panTro1|chrUn_random (48879375-48879554) | |
| 823-1012, gnl|rheMac2|chr11 (22767486-22767665) | |
| 823-1012, gnl|rn3|chr4 (181153457-181153636) | |
| 823-1012, gnl|tetNig1|chr13 (3262048-3261871) | |
| 823-1012, gnl|xenTro1|scaffold_26385 (2531-2705) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| tes (0.207814) | |
| spl (0.143184) | |
| ute (0.132784) | |
| bla (0.124347) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| spl (0.143184) | |
| ute (0.132784) | |
| bla (0.124347) |