Non-Coding RNA Search

Ss1.1-Pig4-TMW8063J16.5

Sequence:


               
               CTGCCCTGGCGCGAAGCCCAGCCCGTGGCCTGCTAGGCTCTCGGCTCAGCAAAATCTACT
CACAGTCCACTCTGTCACTGTCCACCGTGGCCAACGAGGCCCCCAATAACCTTGGCGTGA
AGAGGCCCACGTCTCGGGCTCCATCTCCATCCGGCCTCATGTCTCCAAGCCGCCTGCCTG
GTAGTCGTGAACGTGAATGGGAGAATGGCAGCAATGCCTCCTCCCCAGCCTCAGTGCCCG
AGTACACAGGTCCACGGCTGTACAAGGAGCCCAGCGCCAAGTCCAACAAGTTCATCATCC
ACAACGCCCTGTCACACTGCTGCCTGGCGGGCAAGGTGAACGAGCCACAGAAGAACCGCA
TCCTTGAGGAGATCGAGAAGAGCAAGGCCAACCACTTCCTGATCCTCTTCCGAGACTCAA
GCTGCCAGTTCCGAGCCCTGTACACACTGTCTGGGGAGACGGAGGAGCTGTCTCGGCTGG
CAGGCTATGGCCCCCGAACGGTCACGCCCGCCATGGTCGAGGGCATTTACAAGTACAACT
CAGACCGCAAGCGCTTTACCCAGATCCCCGCCAAGACCATGTCCATGAGCGTGGATGCCT
TCACCATCCAGGGACACCTCTGGCAGAGCAAGAAGCCCACTACTCCCAAGAAGGGGGGCA
GTACCCCTAAATAGCCCTGTCTCAGGTGGTCCGCAGGCCGGGCCCCGGGGGCTCCGGCCG
CCACCCTCCTGGAGGACAGTCTATTGGTATTCCTGGGTCCTGTCCGTCCCCAACCTTGTC
TGGGTGGGGCTGGAGTCCCCACCCCCTAACTTTTGTCCCGTCCTGCTGTGGGGGCTGAGC
TGGGAGGTTCAGGGACTCAGGGCTCAGCTCAGTCCCCTGTCTGTCCTCCCCACCTTCTTG
AATAAAGTAATTTAAAGAGAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCCCTGGCGCGAAGCCCAGCCCGTGGCCTGCTAGGCTCTCGGCTCAGCAAAATCTACT
CACAGTCCACTCTGTCACTGTCCACCGTGGCCAACGAGGCCCCCAATAACCTTGGCGTGA
AGAGGCCCACGTCTCGGGCTCCATCTCCATCCGGCCTCATGTCTCCAAGCCGCCTGCCTG
GTAGTCGTGAACGTGAATGGGAGAATGGCAGCAATGCCTCCTCCCCAGCCTCAGTGCCCG
AGTACACAGGTCCACGGCTGTACAAGGAGCCCAGCGCCAAGTCCAACAAGTTCATCATCC
ACAACGCCCTGTCACACTGCTGCCTGGCGGGCAAGGTGAACGAGCCACAGAAGAACCGCA
TCCTTGAGGAGATCGAGAAGAGCAAGGCCAACCACTTCCTGATCCTCTTCCGAGACTCAA
GCTGCCAGTTCCGAGCCCTGTACACACTGTCTGGGGAGACGGAGGAGCTGTCTCGGCTGG
CAGGCTATGGCCCCCGAACGGTCACGCCCGCCATGGTCGAGGGCATTTACAAGTACAACT
CAGACCGCAAGCGCTTTACCCAGATCCCCGCCAAGACCATGTCCATGAGCGTGGATGCCT
TCACCATCCAGGGACACCTCTGGCAGAGCAAGAAGCCCACTACTCCCAAGAAGGGGGGCA
GTACCCCTAAATAGCCCTGTCTCAGGTGGTCCGCAGGCCGGGCCCCGGGGGCTCCGGCCG
CCACCCTCCTGGAGGACAGTCTATTGGTATTCCTGGGTCCTGTCCGTCCCCAACCTTGTC
TGGGTGGGGCTGGAGTCCCCACCCCCTAACTTTTGTCCCGTCCTGCTGTGGGGGCTGAGC
TGGGAGGTTCAGGGACTCAGGGCTCAGCTCAGTCCCCTGTCTGTCCTCCCCACCTTCTTG
AATAAAGTAATTTAAAGAGAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8WZ12_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8WZ12_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               646-920, + strand, RNAz p=0.974914

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               646-920, + strand, RNAz p=0.974914

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC035808, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC035808, +

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               30-137, gnl|bosTau2|chr7 (12368005-12368112)
               

               
               30-137, gnl|canFam2|chr20 (55391922-55392006)
               

               
               30-137, gnl|danRer3|chrUn (55952582-55952668)
               

               
               30-137, gnl|echTel1|scaffold_305400 (7529-7614)
               

               
               30-137, gnl|fr1|chrUn (189956718-189956802)
               

               
               30-137, gnl|hg17|chr19 (7587384-7587470)
               

               
               30-137, gnl|Hg17|chr19 (7587402-7587509)
               

               
               30-137, gnl|mm7|chr8 (3570244-3570329)
               

               
               30-137, gnl|Mm7|chr8 (3570262-3570368)
               

               
               30-137, gnl|monDom2|scaffold_54 (541063-540978)
               

               
               30-137, gnl|oryCun1|scaffold_197296 (973-893)
               

               
               30-137, gnl|panTro1|chr20 (7937344-7937430)
               

               
               30-137, gnl|rheMac2|chr19 (7566961-7567047)
               

               
               30-137, gnl|rn3|chr12 (2548048-2547962)
               

               
               30-137, gnl|tetNig1|chr3 (11344803-11344887)
               

               
               30-137, gnl|xenTro1|scaffold_903 (175052-175132)
               


               
               367-920, gnl|bosTau2|chr7 (12369712-12369140)
               

               
               367-920, gnl|Hg17|chr19 (7588636-7589189)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               30-137, gnl|bosTau2|chr7 (12368005-12368112)
               

               
               30-137, gnl|canFam2|chr20 (55391922-55392006)
               

               
               30-137, gnl|danRer3|chrUn (55952582-55952668)
               

               
               30-137, gnl|echTel1|scaffold_305400 (7529-7614)
               

               
               30-137, gnl|fr1|chrUn (189956718-189956802)
               

               
               30-137, gnl|hg17|chr19 (7587384-7587470)
               

               
               30-137, gnl|Hg17|chr19 (7587402-7587509)
               

               
               30-137, gnl|mm7|chr8 (3570244-3570329)
               

               
               30-137, gnl|Mm7|chr8 (3570262-3570368)
               

               
               30-137, gnl|monDom2|scaffold_54 (541063-540978)
               

               
               30-137, gnl|oryCun1|scaffold_197296 (973-893)
               

               
               30-137, gnl|panTro1|chr20 (7937344-7937430)
               

               
               30-137, gnl|rheMac2|chr19 (7566961-7567047)
               

               
               30-137, gnl|rn3|chr12 (2548048-2547962)
               

               
               30-137, gnl|tetNig1|chr3 (11344803-11344887)
               

               
               30-137, gnl|xenTro1|scaffold_903 (175052-175132)
               


               
               367-920, gnl|bosTau2|chr7 (12369712-12369140)
               

               
               367-920, gnl|Hg17|chr19 (7588636-7589189)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               nep (0.183925)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

	30-137, gnl\|bosTau2\|chr7 (12368005-12368112)
	30-137, gnl\|canFam2\|chr20 (55391922-55392006)
	30-137, gnl\|danRer3\|chrUn (55952582-55952668)
	30-137, gnl\|echTel1\|scaffold_305400 (7529-7614)
	30-137, gnl\|fr1\|chrUn (189956718-189956802)
	30-137, gnl\|hg17\|chr19 (7587384-7587470)
	30-137, gnl\|Hg17\|chr19 (7587402-7587509)
	30-137, gnl\|mm7\|chr8 (3570244-3570329)
	30-137, gnl\|Mm7\|chr8 (3570262-3570368)
	30-137, gnl\|monDom2\|scaffold_54 (541063-540978)
	30-137, gnl\|oryCun1\|scaffold_197296 (973-893)
	30-137, gnl\|panTro1\|chr20 (7937344-7937430)
	30-137, gnl\|rheMac2\|chr19 (7566961-7567047)
	30-137, gnl\|rn3\|chr12 (2548048-2547962)
	30-137, gnl\|tetNig1\|chr3 (11344803-11344887)
	30-137, gnl\|xenTro1\|scaffold_903 (175052-175132)

	367-920, gnl\|bosTau2\|chr7 (12369712-12369140)
	367-920, gnl\|Hg17\|chr19 (7588636-7589189)

	nep (0.183925)
	ill (0.175593)
	duo (0.172801)
	nje (0.16592)
	nco (0.161734)
	cli (0.152812)
	pty (0.142714)
	pla (0.133672)
	ute (0.132784)
	eep (0.122564)
	ebs (0.118301)