Non-Coding RNA Search

Ss1.1-Pig4-TMW8063J17.3

Sequence:


               
               GGCCTTACTCCCTCTCGTTCGCATATTCATTCATCCCTGTTTTCATTCAACACAGGATGA
GCCCGCCCTGGGTGTGGACACTGGGGACACAATGGTGGCGAGTCAGCCCGAGCCAGATCA
AGCAGAGAGAACACCGAGGGGACCGGGTGGCAGCCTCCCCGAGGAAGTGACAGGGGGACG
GAGAGGGACTCTCCAGGCGGAAGACACAGTCACTGCAAAGGCCCTGAGGGCCTGGGTACA
TGCGAGTGAACGAGTGATGGAGCTCCCGAAAGGATGGAGGCAGGGCCCAGGCTGCAGCCC
CTCCCAGAGCCCCGCCCACACTCACCATCAGCTCCAGGTAGCTCATGCGTTCTGCGGGGT
TCTTTCTCAGGCTAGGAGAGAACAGGACAGTGTGGGGCCAGGCTAGCAGGGAAGAAGCGA
GTCCAGGCCAGCCAGGCCAGGCTGGGCTCACCTCTGCCTGGGCAGCAAGGGGACACATGT
GCCTCTGGGGCTCAAGGAAGAAGGGGCTGGACTGTTCTGGGAGTATCCCAAGATGCAAAT
TACAGAGATTTGGACCAAGCTTCTTCGCTTCTTGGGGTGTTAGCTTTCTTGCCTCTATGG
TGATCTAAGGAATTGCCAATGAGCCCACACCAAATGGTACCATTAATGGTCATTTACTTG
GTGGCCCTAATCAAGAGGGGAAGTGCCCTACTATGGGTTCTGGAAGAGAATGGCTCAGTC
AGCCAGGCTCACTTGTTTCTTATTTTCCAATTAAAGAAATAAAGGCTGTGAATTTTCCTC
TGAGTATCTCTTTGGCCATAACACACAGATGTTGATATGTTACGTTCTCATTGTCTTCAC
TTCTGACTAGTCTATAATTTTATTTTTAAGTCTCTCTCATAACCCAAGAAGAATTTACTT
TTAATTTCCATACAGATATTTTCTTTTCAGTTATGGATTTCCTGTTTTATCTAATTACAG
TCAGAGACCATGGCTTATATGACTTTGCCTTCTGCCTTTTCCCTTATTTCTTTTGTAACC
TCAAGGAAATTAATTTTATAAGGATCCTGTGGGCATTCTTTAATTTGGTACAAAGTTCTA
AACATCAACAAAAAACAAATTTGTTATGCCCTTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCTTACTCCCTCTCGTTCGCATATTCATTCATCCCTGTTTTCATTCAACACAGGATGA
GCCCGCCCTGGGTGTGGACACTGGGGACACAATGGTGGCGAGTCAGCCCGAGCCAGATCA
AGCAGAGAGAACACCGAGGGGACCGGGTGGCAGCCTCCCCGAGGAAGTGACAGGGGGACG
GAGAGGGACTCTCCAGGCGGAAGACACAGTCACTGCAAAGGCCCTGAGGGCCTGGGTACA
TGCGAGTGAACGAGTGATGGAGCTCCCGAAAGGATGGAGGCAGGGCCCAGGCTGCAGCCC
CTCCCAGAGCCCCGCCCACACTCACCATCAGCTCCAGGTAGCTCATGCGTTCTGCGGGGT
TCTTTCTCAGGCTAGGAGAGAACAGGACAGTGTGGGGCCAGGCTAGCAGGGAAGAAGCGA
GTCCAGGCCAGCCAGGCCAGGCTGGGCTCACCTCTGCCTGGGCAGCAAGGGGACACATGT
GCCTCTGGGGCTCAAGGAAGAAGGGGCTGGACTGTTCTGGGAGTATCCCAAGATGCAAAT
TACAGAGATTTGGACCAAGCTTCTTCGCTTCTTGGGGTGTTAGCTTTCTTGCCTCTATGG
TGATCTAAGGAATTGCCAATGAGCCCACACCAAATGGTACCATTAATGGTCATTTACTTG
GTGGCCCTAATCAAGAGGGGAAGTGCCCTACTATGGGTTCTGGAAGAGAATGGCTCAGTC
AGCCAGGCTCACTTGTTTCTTATTTTCCAATTAAAGAAATAAAGGCTGTGAATTTTCCTC
TGAGTATCTCTTTGGCCATAACACACAGATGTTGATATGTTACGTTCTCATTGTCTTCAC
TTCTGACTAGTCTATAATTTTATTTTTAAGTCTCTCTCATAACCCAAGAAGAATTTACTT
TTAATTTCCATACAGATATTTTCTTTTCAGTTATGGATTTCCTGTTTTATCTAATTACAG
TCAGAGACCATGGCTTATATGACTTTGCCTTCTGCCTTTTCCCTTATTTCTTTTGTAACC
TCAAGGAAATTAATTTTATAAGGATCCTGTGGGCATTCTTTAATTTGGTACAAAGTTCTA
AACATCAACAAAAAACAAATTTGTTATGCCCTTAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               294-1116, gnl|bosTau2|chr19 (27693940-27693072)
               

               
               294-1116, gnl|Hg17|chr17 (21157519-21156442)
               

               
               294-1116, gnl|Mm7|chr11 (61032849-61031884)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               294-1116, gnl|bosTau2|chr19 (27693940-27693072)
               

               
               294-1116, gnl|Hg17|chr17 (21157519-21156442)
               

               
               294-1116, gnl|Mm7|chr11 (61032849-61031884)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	294-1116, gnl\|bosTau2\|chr19 (27693940-27693072)
	294-1116, gnl\|Hg17\|chr17 (21157519-21156442)
	294-1116, gnl\|Mm7\|chr11 (61032849-61031884)